BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496494 Length=2127 Score E Sequences producing significant alignments: (Bits) Value AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosp... 3173 0.0 > AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:25318752-25322265 REVERSE LENGTH=2185 Length=2185 Score = 3173 bits (1718), Expect = 0.0 Identities = 2008/2141 (94%), Gaps = 47/2141 (2%) Strand=Plus/Plus Query 1 AGGGTTACTAATTTTGGAATTTTACTGTCCAAAACGAATC--ATAAAATATCT-AGCTTT 57 |||||||||||||| ||||||||||||||||||||||||| | |||| |||| |||||| Sbjct 1 AGGGTTACTAATTTGGGAATTTTACTGTCCAAAACGAATCAAAAAAAAAATCTAAGCTTT 60 Query 58 TTGTTCCTTTTGCGGCTTTTTCGACGTCTTCCTTGCACTATCTTCCTTCTATAGCATCAA 117 |||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||| Sbjct 61 TTGTTCCTTTTGCGGC-TTTTCGTCGTCTTCCTTGCACTATCTTCCTTCTGTAGCATCAA 119 Query 118 TTCGACTCTAAGGTTACGTAGTAGAATTTAAGCGAGAGA-C-A-AGAT-------CA-AA 166 |||| || ||||||||||||||||||||| |||||||| | | |||| || || Sbjct 120 TTCGTTTCCAAGGTTACGTAGTAGAATTTACGCGAGAGAGCGAGAGATCAAAAACCATAA 179 Query 167 --A----AAGTTACGATGAGCTCGTATGATCGTAGATTTACTGATCCAAATTCGTATCGC 220 | ||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 180 CCATCTTAAGTTACAATGAGCTCGTATGATCGTAGATTTGCTGATCCAAATTCGTATCGC 239 Query 221 CAACGCTCTGGCGCCCCAGTTGGTTCGTCTCAGCCGATGGATCCTTCCGCTGCACCATAC 280 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 240 CAACGCTCTGGCGCCCCAGTTGGTTCGTCTCAGCCGATGGATCCTTCCGCCGCACCATAC 299 Query 281 AACCCACGGTACAGTGGTGGTGGTGGTGGGTATGGACCGTCTCCTGTAATGGCCGGTGAC 340 ||||||||||||| |||||||||||| || |||||||| ||||| |||||||||||||| Sbjct 300 AACCCACGGTACACTGGTGGTGGTGGAGGATATGGACCATCTCCGGTAATGGCCGGTGAT 359 Query 341 AATTCCGGATATAATCGGTACCCATCTTTCCAGCCACCTACTGGTGGTTTCTCTGTTGGT 400 |||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 360 AATTCCGGCTATAATCGGTACCCATCTTTCCAGCCACCTAGTGGCGGTTTCTCTGTTGGC 419 Query 401 CGTGGCGGTGGAAGAGGTGGATACGGTCAATACGGGGAGAGAAGCGGCGGAGGGAATT-- 458 || || ||||||||||||||||| ||||||||||| || |||| |||||||||||||| Sbjct 420 CGCGGTGGTGGAAGAGGTGGATATGGTCAATACGGCGATAGAAACGGCGGAGGGAATTGG 479 Query 459 ------GG-GGAGGACGTGGTGGATCGAGTAAAAGAGAGCTAGATAGTGTTTCTCTTCCG 511 || ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 480 GGAGGAGGAGGAGGACGTGGCGGATCGAGTAAAAGAGAGCTAGATAGTGTTTCTCTTCCG 539 Query 512 AAGCAGAATTTTGGGAATCTTGTACATTTCGAGAAGAATTTCTACGTGGAGAGTCCCTCT 571 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| || Sbjct 540 AAGCAGAATTTTGGGAATCTTGTACATTTTGAGAAGAATTTCTATGTGGAGAGTCCCACT 599 Query 572 GTGCAGGCTATGACGGAGCAGGATGTTGCTATGTACAGAACCGAGAGGGATATATCCGTT 631 ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 600 GTGCAAGCTATGACAGAGCAGGATGTTGCAATGTACAGAACCGAGAGGGATATATCCGTT 659 Query 632 GAAGGTCGTGATGTTCCTAAGCCGGTTAAGTTGTTCCAAGATGCTAATTTTCCAGATAAT 691 |||||||||||||||||||||||| | ||| |||||||||||||||| ||||||||||| Sbjct 660 GAAGGTCGTGATGTTCCTAAGCCGATGAAGATGTTCCAAGATGCTAACTTTCCAGATAAC 719 Query 692 ATCCTCGAAGCAATTGCTAAGTTGGGATTTACTGAGCCAACACCTATACAAGCTCAGGGA 751 || || |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 720 ATTCTTGAAGCAATTGCTAAATTGGGATTTACTGAGCCAACACCTATACAAGCTCAGGGA 779 Query 752 TGGCCGATGGCGTTGAAGGGTAGGGATTTGATTGGTATTGCTGAGACTGGCTCTGGTAAG 811 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 TGGCCGATGGCGTTGAAGGGTAGGGATTTGATTGGTATTGCTGAGACTGGCTCTGGTAAG 839 Query 812 ACATTGGCTTACTTGTTACCAGCGTTGGTTCACGTTAGTGCGCAACCTCGATTAGGTCAA 871 ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 840 ACATTGGCTTACTTGTTACCAGCATTGGTTCACGTTAGTGCACAACCTCGATTAGGTCAG 899 Query 872 GATGATGGCCCCATCGTGTTAAT-TCTAGCGCCTACGAGAGAACTAGCTGTTCAGATTCA 930 |||||||||||||| |||||||| | |||| || || ||||||||||||||||||||||| Sbjct 900 GATGATGGCCCCATTGTGTTAATAT-TAGCTCCCACAAGAGAACTAGCTGTTCAGATTCA 958 Query 931 AGAGGAATCAAGGAAATTCGGGCTTCGA--TCTGGTGTTAGAAGTACTTGTATCTATGGT 988 |||||||||||||||||||||| || || |||||||||||||||||||||||||||||| Sbjct 959 AGAGGAATCAAGGAAATTCGGG-TT-GAGGTCTGGTGTTAGAAGTACTTGTATCTATGGT 1016 Query 989 GGTGCTCCTAAAGGACCTCAGATTCGCGATCTTAGAAGAGGTGTTGAGATTGTAATTGCT 1048 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1017 GGTGCTCCTAAAGGACCTCAGATTCGTGATCTTAGAAGAGGTGTTGAGATTGTAATTGCT 1076 Query 1049 ACACCTGGTCGTTTGATCGATATGTTGGAGTGTCAACACACTAATCTGAAGAGAGTGACT 1108 ||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||| Sbjct 1077 ACACCTGGTCGTTTGATTGATATGTTGGAATGTCAACACACTAATTTGAAGAGAGTGACT 1136 Query 1109 TACCTTGTACTGGATGAGGCTGACAGAATGTTAGACATGGGATTTGAACCCCAAATTAGA 1168 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1137 TACCTTGTACTGGATGAGGCTGACAGAATGTTAGACATGGGATTTGAACCCCAAATTAGA 1196 Query 1169 AAGATTGTATCTCAGATCCGACCTGATAGACAAACACTTCTTTGGAGTGCAACATGGCCA 1228 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1197 AAGATTGTATCTCAGATCCGACCTGATAGACAAACACTTCTTTGGAGTGCAACATGGCCA 1256 Query 1229 CGGGAGGTTGAATCTCTTGCCAGGCAGTTTCTACGAGATCCATATAAGGCCATTATTGGA 1288 || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1257 CGAGAGGTTGAAACTCTTGCCAGGCAGTTTCTACGAGATCCATATAAGGCCATTATTGGA 1316 Query 1289 TCAACAGATCTAAAAGCTAACCAGTCTATTAACCAAGTAATCGAGATTGTACCGACGCCA 1348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1317 TCAACAGATCTAAAAGCTAACCAGTCTATTAACCAAGTAATCGAGATTGTACCGACGCCA 1376 Query 1349 GAGAAATACAACAGGCTCCTTACACTGCTTAAGCAGTTAATGGATGGGAGTAAAATCCTA 1408 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 1377 GAGAAATACAACAGGCTCCTTACACTACTTAAACAGTTAATGGATGGGAGTAAAATCCTA 1436 Query 1409 ATATTTGTGGAGACAAAGAGAGGGTGTGATCAAGTGACTAGACAATTGAGAATGGACGGA 1468 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1437 ATTTTTGTGGAGACAAAGAGAGGGTGTGATCAAGTGACTAGACAATTGAGAATGGACGGA 1496 Query 1469 TGGCCAGCTCTTGCCATACATGGTGACAAGACCCAATCGGAAAGGGACCGAGTCTTGGCA 1528 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1497 TGGCCAGCTCTTGCCATACATGGTGACAAGACCCAATCGGAAAGAGACCGAGTCTTGGCA 1556 Query 1529 GAATTTAAGAGTGGACGAAGCCCGATAATGACTGCCACTGATGTAGCAGCAAGGGGACTT 1588 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1557 GAATTTAAGAGTGGACGAAGCCCGATAATGACTGCCACTGATGTAGCAGCAAGGGGACTT 1616 Query 1589 GATGTTAAGGACATAAAATGTGTGGTTAATTATGATTTCCCAAATACCTTGGAGGATTAC 1648 ||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1617 GATGTGAAGGACATTAAATGTGTGGTTAATTATGATTTCCCAAATACATTGGAGGATTAC 1676 Query 1649 ATCCATAGGATTGGTCGAACTGGGCGTGCAGGAGCTAAAGGAATGGCCTTTACATTCTTC 1708 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1677 ATCCATAGGATTGGTCGAACCGGGCGTGCAGGAGCTAAAGGAATGGCCTTTACATTCTTC 1736 Query 1709 ACACATGACAATGCCAAGTTTGCAAGAGAGCTTATCAAGATCCTTCAAGAAGCTGGTCAA 1768 |||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||| Sbjct 1737 ACACATGACAATGCTAAGTTTGCGAGAGAGCTTGTCAAGATCCTTCAAGAAGCTGGTCAA 1796 Query 1769 GTTGTACCTCCTACTCTCTCCGCACTAGTCCGGTCATCTGGTTCGGGTTATGGAGGTTCT 1828 |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 1797 GTTGTACCTCCTACTCTCTCCGCACTAGTCCGATCATCTGGTTCTGGTTATGGAGGTTCA 1856 Query 1829 GGTGGGGGAAGAAACTTCCGGCCAAGAGGAGGAGGACGTGGTGGTGGGTTTGGAGATAAA 1888 ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1857 GGTGGTGGAAGAAACTTCAGGCCAAGAGGAGGAGGACGTGGTGGTGGGTTTGGAGATAAA 1916 Query 1889 CGGTCAAGATCGACTTCAAACTTTGTACCTCACGGTGGAAAGAGGACTTGGTAGAGATAA 1948 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 1917 CGGTCAAGATCGACTTCAAACTTTGTACCTCACGGTGGAAAGAGGACTTGGTA-A-A--- 1971 Query 1949 GAGATAATCTCATCATTTTGATTCTCTGAGAAAAGCTTGGATTATGATGATGATGATCAG 2008 |||| | || ||||||||||||||| |||||||| ||| |||||||||||||||||||| Sbjct 1972 GAGA-A-TCCCATCATTTTGATTCTATGAGAAAACCTTTAATTATGATGATGATGATCAG 2029 Query 2009 CGTTTAGTTTCGAGTTGAAGTTCTCTT-TCGTAGAGAACAAAC-TTATACTATTTAACTA 2066 ||||| ||||||| | |||||||| || ||||||||||||||| || |||||| |||||| Sbjct 2030 CGTTTGGTTTCGACTAGAAGTTCT-TTGTCGTAGAGAACAAACATT-TACTATATAACTA 2087 Query 2067 TTTACCTGATTTCGCTTCTTCGTCTTCGTCTTCTTCTTGAT 2107 |||| ||||||||||| |||| ||||| |||||||| |||| Sbjct 2088 TTTAGCTGATTTCGCTGCTTCTTCTTCTTCTTCTTCATGAT 2128 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 105471345045 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5