BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496502
Length=1469
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63180.1 | Symbols: | Pectin lyase-like superfamily protein... 2226 0.0
AT5G48900.1 | Symbols: | Pectin lyase-like superfamily protein... 259 5e-68
> AT5G63180.1 | Symbols: | Pectin lyase-like superfamily protein
| chr5:25340954-25343119 REVERSE LENGTH=1457
Length=1457
Score = 2226 bits (1205), Expect = 0.0
Identities = 1386/1472 (94%), Gaps = 18/1472 (1%)
Strand=Plus/Plus
Query 1 ACTCATATGTTTCTTCCTAATTCTCCTATT-ATACCTT-AAATATTATCAAAAACAAAAA 58
||||||||||||| ||| |||||| || || ||||||| |||| ||||||| ||||||||
Sbjct 1 ACTCATATGTTTCGTCCCAATTCT-CTTTTAATACCTTCAAAT-TTATCAACAACAAAAA 58
Query 59 GCCCAATAGACACAATGCTAAATTCTCCGTATCTATCCTTCACACTAATCTTTTTCTGCT 118
||| || | ||||||||||||||||| | |||||||||||| |||| |||||||||||||
Sbjct 59 GCCAAAGAAACACAATGCTAAATTCTTCATATCTATCCTTCGCACTTATCTTTTTCTGCT 118
Query 119 GCATTTTATTCTCCGCTCTCACTTCGTCTTTGCCCGTTTCCGATCCTGAGCTCGTTGTCG 178
||||||| |||||||||||| |||||||||||||||||||||| |||||||| |||||||
Sbjct 119 GCATTTTGTTCTCCGCTCTCGCTTCGTCTTTGCCCGTTTCCGACCCTGAGCTTGTTGTCG 178
Query 179 AGGAAGTACACAGGAAAATAAACGAGTCTATATCAAGAAGGAAGCTAGGTTTCTTCTCGT 238
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 179 AGGAAGTACACAGAAAAATAAACGAGTCCATATCAAGAAGGAAGCTAGGGTTCTTCTCGT 238
Query 239 GCGGGACTGGTAATCCAATAGATGATTGTTGGCGATGCGAGAAGGATTGGGAGAACAACC 298
|||||| |||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 239 GCGGGAGTGGTAATCCAATCGATGATTGTTGGCGATGCGACAAGGATTGGGAGAAAAACC 298
Query 299 GAAAACGGCTAGCCGATTGCGGTATCGGTTTTGGCAAAAACGCTATTGGTGGTCGTGATG 358
|||||||| |||| || || ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 299 GAAAACGGTTAGCAGACTGTGGTATCGGTTTTGGCAAGAACGCTATTGGCGGTCGTGATG 358
Query 359 GTGAAATCTACGTGGTCACGGATCCAGGAAACGACGATCCAGTAAATCCTAAACCCGGAA 418
|||||||||| ||||||||||||||||||||||| ||||||||||| |||| ||| ||||
Sbjct 359 GTGAAATCTATGTGGTCACGGATCCAGGAAACGATGATCCAGTAAACCCTAGACCGGGAA 418
Query 419 CACTAAGATACGCGGTAATTCAAGATGAACCGCTATGGATCATTTTTAAGCGAGACATGA 478
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CACTAAGATACGCAGTCATTCAAGATGAACCGCTATGGATCATTTTTAAGCGAGACATGA 478
Query 479 CGATCCAACTAAAAGAAGAACTCATCATGAATTCTTTCAAAACCCTAGACGGACGAGGAG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CGATCCAACTAAAAGAAGAACTCATCATGAATTCTTTCAAAACCCTAGACGGACGAGGAG 538
Query 539 CATCCGTACATATCTCCGGTGGGCCATGTATAACCATACAATATGTAACCAACATCATCA 598
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CCTCCGTACACATCTCCGGTGGGCCATGTATAACCATACAATATGTAACCAACATCATCA 598
Query 599 TCCATGGTTTACACATACATGACTGCAAGCAAGGTGGAAATACTTACGTACGTGACTCAC 658
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 599 TCCATGGTTTACACATACATGACTGCAAGCAAGGTGGGAATACTTACGTACGTGACTCAC 658
Query 659 CAGAGCATTACGGATATAGAACGGTATCGGACGGTGACGGTGTGTCCATCTTCGGTGGGA 718
|||||||||||||||||||||||||||| ||||||||||||||||| || |||||||| |
Sbjct 659 CAGAGCATTACGGATATAGAACGGTATCCGACGGTGACGGTGTGTCAATATTCGGTGGAA 718
Query 719 GTCACGTGTGGGTTGATCATTGCTCGCTCTCGAATTGCAACGATGGGTTGATCGATGCGA 778
| |||||||||||||||||||||||||| |||||||||||||| ||||| || ||||| |
Sbjct 719 GCCACGTGTGGGTTGATCATTGCTCGCTATCGAATTGCAACGACGGGTTAATTGATGCAA 778
Query 779 TTCGTGGATCAACGGCTATAACGATCTCTAACAATTATTTGACGCATCATAATAAGGTTA 838
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 779 TTCGTGGATCAACGGCTATAACGATCTCGAACAATTATTTGACGCATCATAATAAGGTTA 838
Query 839 TGTTATTGGGACACAGTGATACGTACGAACAAGACAAGAACATGCAAGTCACTATCGCTT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TGTTATTGGGACACAGTGATACGTACGAACAAGACAAGAACATGCAAGTCACTATCGCTT 898
Query 899 TTAACCATTTTGGAGAAGGCCTCGTCCAAAGAATGCCAAGGTGTAGACATGGATATTTCC 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TTAACCATTTTGGAGAAGGCCTCGTCCAAAGAATGCCAAGGTGTAGACATGGATATTTCC 958
Query 959 ATGTGGTGAACAATGACTATACACATTGGGAAATGTATGCAATTGGAGGAAGTGCTAATC 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ATGTGGTGAACAATGACTATACACATTGGGAAATGTATGCAATTGGAGGAAGTGCTAATC 1018
Query 1019 CTACAATCAACTCTCAAGGCAACCGTTTTCTTGCCCCTGATGACTCATCTAGCAAAGAGG 1078
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1019 CTACCATCAACTCTCAAGGCAACCGTTTTCTTGCTCCTGATGACTCATCTAGCAAAGAGG 1078
Query 1079 TAACAAAGCACGAGGATGCGCCCGAAAACGAATGGAGAAATTGGAATTGGAGATCCGAAG 1138
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||
Sbjct 1079 TAACAAAGCACGAGGATGCGCCGGAAGACGAATGGAGAAATTGGAATTGGAGATCTGAAG 1138
Query 1139 GAGATCTAATGCTTAATGGTGCATTCTTCACCTATTCTGGCGCTGGACCAACTAAATCAT 1198
|||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1139 GAGATCTACTGCTTAATGGTGCATTCTTCACCTATTCTGGTGCTGGACCAGCTAAATCAT 1198
Query 1199 CAAGCTATTCAAAAGCTTCGAGCCTAGCCGCGAGACCGTCCTCTCATGTTGGTGAGATAA 1258
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1199 CAAGCTATTCAAAAGCTTCGAGTCTAGCCGCGAGACCGTCCTCTCATGTTGGTGAGATAA 1258
Query 1259 CTATAGCTTCGGGTGCACTCAGCTGCAAAAGGGGTTCCCATTGTTGACCATGCATACCCC 1318
||||||| ||||||||||||||||||||||||||||| ||||||||| | |||| |||
Sbjct 1259 CTATAGCCTCGGGTGCACTCAGCTGCAAAAGGGGTTCTCATTGTTGA---T-CATAGCCC 1314
Query 1319 ACCAACGTGTATGTGT-CGCATGTGTGTATATACGTACGTATAATATAATGAAACCAGCA 1377
| |||||||||||||| ||||||||||||||||| | |||||||||||||||| ||||
Sbjct 1315 ATCAACGTGTATGTGTGCGCATGTGTGTATATAC--A--TATAATATAATGAAACTAGCA 1370
Query 1378 CTTGAAAGCTAATTATGTAATAATCTTGGTGGCAAAGTGAAGAAGTGTTTATTACACATT 1437
||||||||||||| |||||||||||| ||| |||||||||||| |||||||||| ||
Sbjct 1371 CTTGAAAGCTAAT---GTAATAATCTTGATGGGAAAGTGAAGAAGAGTTTATTACA--TT 1425
Query 1438 TTATCTGGCCGTTGTGTCGGCAGAGTTATTTC 1469
|||||| | |||||||||||||||||||||||
Sbjct 1426 TTATCTTGTCGTTGTGTCGGCAGAGTTATTTC 1457
> AT5G48900.1 | Symbols: | Pectin lyase-like superfamily protein
| chr5:19825137-19829092 FORWARD LENGTH=1540
Length=1540
Score = 259 bits (140), Expect = 5e-68
Identities = 708/972 (73%), Gaps = 80/972 (8%)
Strand=Plus/Plus
Query 214 AGAAGGAAG-CTAGGTTTCTTCTCGTGCGGGACTGGTAATCCAATAGATGATTGTTGGCG 272
|||| |||| |||| | |||||| ||| || || |||||||| ||||||||||||||
Sbjct 272 AGAA-GAAGATTAGGATACTTCTCATGCTCAACCGGAAATCCAATCGATGATTGTTGGCG 330
Query 273 ATGCGAGAAGGA-TTGGGAGA-ACAACCGAAAACGGCTAGCCGATTGCGGTATCGGTTTT 330
|| || ||| ||| | | | ||||||| |||||| |||||| ||||| ||
Sbjct 331 TTGTGA-CCGGAGATGGCA-ATCCCGGCGAAAACATCTAGCCAATTGCGCAATCGGGTTC 388
Query 331 GG-CAAAAACGCTATTGGTGGTCGTGATGGT-GAAATCTACGTGGTCACG-GATCCAGGA 387
|| | || || || || ||| | || ||| | | |||||| || | | ||||| |
Sbjct 389 GGTC-GCAATGCAATCGGCGGTAGAGACGGTCGTTA-CTACGTAGTGA-GTGATCC---A 442
Query 388 AACGACGAT---CCAGTAAATCCTAAACCCGGAACACTAAGAT-ACGCGGTAATTCAAGA 443
||||||||| || || || |||||||| |||||| || | | |||| |||||||||||
Sbjct 443 AACGACGATAACCCGGTTAACCCTAAACCGGGAACATTACG-TCACGCAGTAATTCAAGA 501
Query 444 TGAACCGCTATGGATCATTTTTAAGCGAGACAT-GACGATCCAAC--TAAAAGAAGAACT 500
||||| |||||||| | ||||| || ||||| | | || ||| |||||||||||||
Sbjct 502 AGAACCATTATGGATCGTCTTTAAACGTGACATGGTC-AT--AACATTAAAAGAAGAACT 558
Query 501 CATCATGAATTCTTTCAAAACCCTAGACGGACGAGGAG-CATCCG-T-ACATATCTCCGG 557
|||||||| ||||||||| | || || || || | || || | ||||| ||
Sbjct 559 AATCATGAACAGTTTCAAAACAATCGATGGTCGTGGCGTCA-ACGTTCACATAGCT--AA 615
Query 558 TGG-GCCATGTATAACCATACAATAT-GTAACCAACATCATCATCCATGGTTTACACATA 615
||| | |||| || || || || | | || || ||||| ||||| ||||| |||| ||
Sbjct 616 TGGTG-CATGCATCACGATTCAGT-TCGTGACTAACATTATCATTCATGGGATACATATT 673
Query 616 CATGACTGCA-AGCAAGGTGGAAATACTTA-CG-TACGTGA-CTCACCAGAGCATTACGG 671
||||| || | | ||| ||| || | || | || | | ||| || |||||| ||
Sbjct 674 CATGATTGTAGACCAA-CTGGTAACGC-TATGGTTA-G-AAGCTCTCCTTCGCATTATGG 729
Query 672 ATATAGAACGGTAT--CGGACGGTGACGGTG-TGTCCATCTTC-GGTGGGAGTCACGTGT 727
| ||||| ||| | || || || || | | || || ||| ||| |||||| | |
Sbjct 730 TTGGAGAAC--TATGGCTGATGGAGATGG-GATTTCGATTTTCGGGT-CGAGTCATATTT 785
Query 728 GGGTTGATCATTGCTCGCTCTCGAATTGCAAC-GATGGG-TTGATCGATGC-GATTCGTG 784
|| |||||||| ||||| |||||||| | |||||| || || ||||| | || ||
Sbjct 786 GGATTGATCATAATTCGCTTTCGAATTG-TGCTGATGGGCTT-ATTGATGCTG-TT-ATG 841
Query 785 G-ATCAACGGCTATAACGATCTCTAACAATTATTTGACGCATCATAATAAGGTTATGTTA 843
| || || ||||| || ||||| || ||||| || || || || ||| |||||||||||
Sbjct 842 GCTTCTACTGCTATTACTATCTCCAATAATTACTTCACACACCACAATGAGGTTATGTTA 901
Query 844 TTGGGACACAGTGATACGTACGAACAA--GACAAGAACATGCAAGTCACTATCGCTTTTA 901
|||||||| |||||||| || |||| || ||| |||||||| || || |||| ||
Sbjct 902 TTGGGACATAGTGATACCTA--TACAAGGGATAAGGTTATGCAAGTTACAATAGCTTATA 959
Query 902 ACCATTTTGGAGAAGGCCTCGTCCAAAGAATGCCAAGGTGTAGACATGGATATTTCCATG 961
| |||||||| ||||| || | || |||||||| |||||||| ||||||||||| ||||
Sbjct 960 ATCATTTTGGTGAAGGTCTTATTCAGAGAATGCCGAGGTGTAGGCATGGATATTTTCATG 1019
Query 962 TGGTGAACAATGACTATACACATTGGGAAATGTATGCAATTGGAGGAAGTGCTAATCCTA 1021
| || |||||||||||||||||||||||||||||||| || || || ||||| | |||||
Sbjct 1020 TAGTTAACAATGACTATACACATTGGGAAATGTATGCGATCGGTGGCAGTGCGAGTCCTA 1079
Query 1022 CAATCAACT-CTCAAGGCAACCGTTTTCTTGCCCCT-GATGACTCA-TCTAGC-AAAGAG 1077
| || ||| | ||||| || | | ||| ||||| || || | | | || ||||||
Sbjct 1080 CCATTAACAGC-CAAGGAAATAGATATCTCGCCCCAAGAA-AC-CGGTTT-GCTAAAGAG 1135
Query 1078 GTAACAAAGCACGAGG--ATGC-GCCCGAAAA-CGAATGGAGAAATTGGAATTGGAGATC 1133
|| |||||| | ||| |||| | | || | ||||||| ||||||||||||||||
Sbjct 1136 GTGACAAAG-A-GAGACTATGCAGGGC-AATGGC-AATGGAGGCATTGGAATTGGAGATC 1191
Query 1134 CGAAGGAGATCT 1145
|||||||||||
Sbjct 1192 AGAAGGAGATCT 1203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72439386435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5