BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496512
Length=1571
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63290.1 | Symbols: | Radical SAM superfamily protein | chr... 2427 0.0
AT5G63280.1 | Symbols: | C2H2-like zinc finger protein | chr5:... 71.3 3e-11
> AT5G63290.1 | Symbols: | Radical SAM superfamily protein | chr5:25369245-25370921
REVERSE LENGTH=1586
Length=1586
Score = 2427 bits (1314), Expect = 0.0
Identities = 1490/1575 (95%), Gaps = 12/1575 (1%)
Strand=Plus/Plus
Query 2 ttttttttGG-AATTATGCTGAAAACAACGATTTCTCCAATTTTCTCATCGTTTACATGT 60
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 13 TTTTATTTGGTAATTATGCTGAAAACAACGATTTCTCCAATTTTCTCATCGTTTACAGGT 72
Query 61 AAACCCAAG-ACT--TCGAGGTTGATTTTTCGAGCTTTTAGTAAGGTTGTTCTTCAAGAT 117
||||||||| || |||| |||| |||||||||||||||||||||||||||| ||||||
Sbjct 73 AAACCCAAGTGCTCATCGAAGTTGTTTTTTCGAGCTTTTAGTAAGGTTGTTCTACAAGAT 132
Query 118 ACTCCACCAAGTGCTCGACGAAATGCGTCAACCAATCTGACTACGTTACACCAAGGTCCA 177
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 133 ACTCCACCAAGTGCTCGACGAAATGCGTCAACCAATCTTACTACGTTACACAAAGGTCCA 192
Query 178 CCAACCTCGGCTTACGTTCATCTTCCGTTTTGTCGCAAACGCTGCCATTATTGCGACTTC 237
|||||||| || |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 193 CCAACCTCAGCCTACGTTCATCTTCCGTTTTGTCGCAAACGCTGTCATTATTGTGACTTT 252
Query 238 CCAATCTTAGCTCTAGGCACGTCTTCTTCTTCTTTAACCAGTCCGTCTAATGTCTACGAG 297
|| |||||||||||||||| |||||||||||| | |||| ||||||||||||||||||
Sbjct 253 CCTATCTTAGCTCTAGGCATGTCTTCTTCTTC---AGCCAGACCGTCTAATGTCTACGAG 309
Query 298 GAAGGAAAAGAAGATGATCC-ACGTATCACAAACTATGTGAATTTGCTTGTTAGAGAGAT 356
||||||||||||||||| || | | ||||| |||||||||||||||||||||||||||||
Sbjct 310 GAAGGAAAAGAAGATGACCCGA-GAATCACGAACTATGTGAATTTGCTTGTTAGAGAGAT 368
Query 357 ACAAGCGACAAGAACGGATTATGATACGAACCCGAATCTCGAGACGGTGTTTTTCGGGGG 416
| |||||||||| ||||||| |||||||||||||||||| || |||||||||||||| ||
Sbjct 369 AAAAGCGACAAGGACGGATTTTGATACGAACCCGAATCTAGAAACGGTGTTTTTCGGTGG 428
Query 417 TGGGACGCCTTCTCTTGTTCCTCCAAAGCTTGTTTCTTTGATTCTGGAAACATTGAGTTT 476
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 429 TGGGACGCCTTCTCTTGTTCCTCCGAAGCTTGTTTCTTTGATTCTGGAAACATTGAGTTT 488
Query 477 GAATTTCGGGTTGAGTCCTGATGCTGAGATATCAATGGAGATGGATCCAGGCACGTTTGA 536
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 489 GAATTTCGGGCTGAGTCCAGATGCTGAGATATCAATGGAGATGGATCCAGGCACGTTTGA 548
Query 537 TGGTCAGAAACTGAAGGAATTGATGAAATTGGGAGTGAACAGAGTGTCTTTAGGAGTTCA 596
||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 549 TGGTCAGAAGCTGAAGGATTTGATGAAATTGGGAGTTAACAGAGTGTCTTTAGGAGTTCA 608
Query 597 AGCATTTCAAGATGAGCTTTTGAAAGCTTGTGGAAGAGCTCATGGTGTTTCTCAAGTGTA 656
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 609 AGCTTTTCAAGATGAGCTTTTGAAAGCTTGTGGAAGAGCTCATGGTGTCTCTCAAGTGTA 668
Query 657 TGAAGCAATAGAGTTTGTTAAAGATTGTGGAGTTGAGAATTGGAGTATGGATCTTATATC 716
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 669 TGAAGCAATAGAGTTTGTTAAAGAATGTGGAGTTGAGAATTGGAGTATGGATCTTATTTC 728
Query 717 TTCTCTGCCTCACCAGACATTGGAGATGTGGGAAGAGAGTTTGAGATTAGCTATCGAATC 776
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 729 TTCTCTGCCTCACCAGACTTTGGAGATGTGGGAAGAGAGTTTGAGATTAGCTATCGAATC 788
Query 777 ACAGCCCAATCATGTTTCTGTATATGATCTGCAAGTCGAACAAGGCACAAAGTTTGGAAA 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 ACAGCCCAATCATGTTTCTGTATATGATCTGCAAGTCGAACAAGGCACAAAGTTTGGAAA 848
Query 837 CTTGTACACTCCAGGACAATCCCCTCTTCCTTCAGAAACACAATCTGCAGAGTTTTATAA 896
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 849 TTTGTACACTCCAGGACAGTCCCCTCTTCCTTCAGAAACACAGTCTGCAGAGTTTTATAA 908
Query 897 AACAGCATCATCAATGCTCCGTGGAGCAGGTTATGAGCATTATGAAGTCAGCAGTTACTC 956
|||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 909 AACAGCATCATCGATGCTCCGTGGTGCAGGTTATGAACATTATGAAGTCAGCAGTTACTC 968
Query 957 GAAAGATGGGTTCAAGTGCAAACACAACTTGATATACTGGAAGAACAAGCCATTTTATGC 1016
|| ||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 969 GAGAGACGGTTTCAAGTGCAAACACAACTTGATATACTGGAAGAACAAGCCATTCTATGC 1028
Query 1017 TTTCGGTTTAGGTTCGGCGAGTTATGTTGGAGGGTTGAGGTTTTCAAGGCCAAGAAGGCT 1076
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1029 TTTCGGTTTAGGTTCAGCGAGTTATGTTGGAGGGTTGAGGTTTTCAAGGCCAAGGAGGCT 1088
Query 1077 TAAGGAATACACAAACTACGTCGCCGACTTGGAGAATGGCACATCAAATTGGTGTGGAAA 1136
||||||||||||||||| ||||| ||||||||||||||| || |||| |||||||||||
Sbjct 1089 AAAGGAATACACAAACTATGTCGCTGACTTGGAGAATGGCGCAGCAAACTGGTGTGGAAA 1148
Query 1137 CGGTGATGTTGATCTTAAGGATGTCGCAACAGACATCCTAATGTTATCTTTCAGAACATC 1196
||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||
Sbjct 1149 TGGTGATGTTGATCTTAAGGATGTTGCAACAGACATCTTAATGCTATCTTTCAGAACATC 1208
Query 1197 AAAAGGGCTTGAGCTTAAGGAGTTTGGAGAAGCTTTTGGCAGCGAGGTAGTGAAATCGAT 1256
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1209 TAAAGGGCTTGAACTTAAGGAGTTTGGAGAAGCTTTTGGCAGTGAGGTAGTGAAATCAAT 1268
Query 1257 CTGTAAAGTATATGAGCCTTATGTGGAGAGTGGGCACATTGTTTGTTTGGATGATATGAG 1316
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 CTGTAAAGTTTATGAGCCTTATGTGGAGAGTGGGCACATTGTTTGTTTGGATGATATGAG 1328
Query 1317 AAGCGAAGTGATGAGTGATGAATTCAAAACCTTAGTTGCAAATGATGAAGTGAAGATTGA 1376
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 AAGCGAAGTGATGATTGATGAATTCAAAACCTTAGTTGCAAATGATGAAGTGAAGATTGA 1388
Query 1377 GGATCATGTGAGGTACCTTAGACTGAAAGATCCAGATGGTTTCCTCCTCTCTAATGAGCT 1436
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1389 GGATCATGTGAGGTACCTTAGACTGAAAGATCCAGATGGTTTTCTCCTCTCTAATGAGTT 1448
Query 1437 GATATCTCTAGCGTTTGGCGTGGTAGCTCCTTAAACCTTAAAGCTACTAACAAAAAAGGT 1496
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1449 GATATCTCTATCGTTTGGCGTGGTAGCTCCTTAAACCTTAAAGCTACTAACAAGAAAGAT 1508
Query 1497 TGTTTTTATACATCCTTACTGTTATAGATTGTGTTTCAAACTGGATATTATCATTGATAT 1556
|||||| |||| || |||||||||||||||||||||||| || ||| |||||||||||||
Sbjct 1509 TGTTTT-ATAC-TC-TTACTGTTATAGATTGTGTTTCAACCTTGATGTTATCATTGATAT 1565
Query 1557 GTATGAAGATTCGAT 1571
|||||||||||||||
Sbjct 1566 GTATGAAGATTCGAT 1580
> AT5G63280.1 | Symbols: | C2H2-like zinc finger protein | chr5:25367031-25369297
FORWARD LENGTH=1207
Length=1207
Score = 71.3 bits (38), Expect = 3e-11
Identities = 44/47 (94%), Gaps = 0/47 (0%)
Strand=Plus/Minus
Query 1525 TTGTGTTTCAAACTGGATATTATCATTGATATGTATGAAGATTCGAT 1571
||||||||||| || ||| ||||||||||||||||||||||||||||
Sbjct 1207 TTGTGTTTCAACCTTGATGTTATCATTGATATGTATGAAGATTCGAT 1161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77559842025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5