BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496551
Length=1449
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63620.1 | Symbols: | GroES-like zinc-binding alcohol dehyd... 2281 0.0
> AT5G63620.1 | Symbols: | GroES-like zinc-binding alcohol dehydrogenase
family protein | chr5:25466128-25468433 REVERSE LENGTH=1673
Length=1673
Score = 2281 bits (1235), Expect = 0.0
Identities = 1382/1453 (95%), Gaps = 10/1453 (1%)
Strand=Plus/Plus
Query 1 TGTCTCTTTCGTTGCCCAAAACTCCGATCAAATTCCTCCGTCGTGTTTGCATGGCGTTTG 60
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 88 TGTCTCTTTCGTTGCCCAAATCTCCGATCAAATTCGTCCGTCGTGTTTGCATGGCGTTTG 147
Query 61 CTCCGATTCTCCGCCGCGCCTCCGCCGCTAAGAACCTCTTGTCCTTAACTAGACTCGCCG 120
||||||||||||||||||||||||||| |||||||||||| || ||||| ||||||||||
Sbjct 148 CTCCGATTCTCCGCCGCGCCTCCGCCGTTAAGAACCTCTTCTCTTTAACAAGACTCGCCG 207
Query 121 CTGCCTCTTCTTCTCTCTCCACTAGGTCTCTTCAAACCGGAACTTCCGGTGATGACTCTC 180
|| |||| | | ||||||||||||||||| ||||||||| | ||||| ||||| ||||
Sbjct 208 TTGGCTCTGC--C-CTCTCCACTAGGTCTCTCCAAACCGGAGCCTCCGGCGATGATTCTC 264
Query 181 AATCCATGTCTGGGTATCACGTGAGCTCCGGCGGGTTCATGCGTGGAGCCGTGTATCGCG 240
|||| ||| |||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 265 AATCGATGGGTGGGTATCACGTGAGCCCCGGCGGATTCATGCGTGGAGCCGTGTATCGCG 324
Query 241 AGCCCAATAAGCCTCTAACCATCGAAGAATTTCATATTCCCCGCCCCAAAGCCAATGAAA 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 325 AGCCCAATAAGCCTCTAACCATCGAAGAATTTCATATTCCCCGCCCCAAATCCAATGAAA 384
Query 301 TTCTCATCAAAACCAAAGCTTGTGGAGTTTGTCACTCTGATCTTCATGTGATGAAAGGAG 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 385 TTCTCATCAAAACCAAAGCTTGTGGAGTTTGCCACTCTGATCTTCATGTGATGAAAGGAG 444
Query 361 AGATACCATTTGCTAGTCCTTGTGTAATTGGTCATGAAATCACTGGTGAAGTTGTTGAGC 420
||||||| || |||||||||||||| ||||||||||| || ||||||||||||||||| |
Sbjct 445 AGATACCGTTCGCTAGTCCTTGTGTTATTGGTCATGAGATTACTGGTGAAGTTGTTGAAC 504
Query 421 ACGGTCCACTTACTGATCACAAGATCATTAATAGATTTCCAATCGGGTCTCGTGTAGTTG 480
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 ATGGTCCACTTACTGATCACAAGATCATTAATAGATTTCCAATCGGGTCTCGTGTAGTTG 564
Query 481 GAGCTTTCATTATGCCTTGTGGAACCTGTTCTTATTGTGCTAAGGGCCATGATGATCTAT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 GAGCTTTCATTATGCCTTGTGGAACCTGTTCTTATTGTGCTAAGGGCCATGATGATCTAT 624
Query 541 GTGAAGACTTCTTTGCTTACAATAGAGCTAAGGGAACTCTTTACGATGGCGAAACTCGTC 600
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 625 GTGAAGACTTCTTTGCTTACAACAGAGCCAAGGGAACTCTTTACGATGGCGAAACTCGTC 684
Query 601 TCTTTTTGCGACATGATGATTCACCAGTGTATATGTACAGTATGGGAGGTATGGCTGAGT 660
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 685 TCTTTTTGCGACATGATGATTCACCAGTGTATATGTATAGTATGGGAGGGATGGCTGAGT 744
Query 661 ACTGTGTCACACCAGCTCACGGGTTAGCTCCTCTACCGGAGTCGTTGCCCTACACTGAAT 720
||||||| ||||||||||| || |||||||||||||| ||||| ||||||||| ||||||
Sbjct 745 ACTGTGTTACACCAGCTCATGGTTTAGCTCCTCTACCAGAGTCTTTGCCCTACTCTGAAT 804
Query 721 CTGCAATTCTAGGTTGTGCTGTTTTTACAGCATATGGTGCTATGGCTCATGCTGCTGAGA 780
|||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 CTGCCATTCTGGGATGTGCTGTTTTTACAGCATATGGTGCTATGGCTCATGCTGCTGAGA 864
Query 781 TCCGTCCTGGAGATTCTATTGCTGTTATTGGAATTGGTGGTGTTGGCTCCAGTTGTTTGC 840
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 865 TCCGTCCTGGAGATTCTATTGCAGTTATTGGAATTGGTGGTGTGGGCTCCAGTTGTTTGC 924
Query 841 AGATCGCGAGGGCTTTTGGAGCCTCGGATATAATTGCTGTGGATGTTCAGGATGATAAAT 900
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 925 AGATCGCAAGGGCTTTTGGAGCCTCGGATATCATTGCTGTGGATGTTCAGGATGATAAAT 984
Query 901 TGCAGAAGGCCAAGACACTTGGTGCTACCCATATTGTCAATGCTGCTAAAGAAGATGCTG 960
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 985 TACAGAAGGCCAAGACACTTGGTGCTACTCATATTGTCAATGCTGCTAAAGAAGATGCTG 1044
Query 961 TTGACAGGATAAGAGAAATAACCGGTGGGATGGGTGTTGATGTTGCTGTTGAAGCCTTGG 1020
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 TTGAAAGGATAAGAGAAATAACCGGTGGGATGGGTGTTGATGTTGCTGTTGAAGCCTTGG 1104
Query 1021 GAAAGCCTCAAACTTTCATGCAGTGCACACTAAGTGTGAAAGATGGTGGAAAAGCTGTGA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 GAAAGCCTCAAACTTTCATGCAGTGCACACTAAGTGTGAAAGATGGTGGAAAAGCTGTGA 1164
Query 1081 TGATTGGACTCTCACAAGCTGGTTCCGTTGGAGAAATTGACATAAACCGACTTGTTCGTA 1140
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1165 TGATTGGACTCTCACAAGCTGGTTCCGTTGGAGAAATTGACATAAATCGACTTGTTCGTA 1224
Query 1141 GAAAGGTTTGGGTTATAGGGTCATATGGAGGAAGAGCAAGACAGGATCTTCCTAAAGTAG 1200
||||| | |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1225 GAAAGATAAAAGTTATAGGATCTTATGGAGGAAGAGCAAGACAGGATCTTCCTAAAGTAG 1284
Query 1201 TGAAGTTGGCAGAGTCAGGGATTTTCAATCTCACAAACGCAGTCTCAAGTAAATACAAGT 1260
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1285 TGAAATTGGCAGAGTCAGGGATTTTCAATCTCACAAACGCAGTCTCAAGTAAATACAAGT 1344
Query 1261 TTGAAGATGCAGGAAAAGCATTTCAAGATCTCAATGAAGGCAAAATCGTGAGCCGAGGTG 1320
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1345 TTGAAGATGCAGGAAAAGCATTTCAAGATCTCAACGAAGGCAAAATCGTGAGCCGAGGTG 1404
Query 1321 TTGTTGAGATACTATAACCA-TA--GCCTTTTGATTCTGGTTTGGGAATGACTGCTTCAT 1377
|||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||
Sbjct 1405 TTGTTGAGATACTATAACCAATATAGCCTTTTGATTCTGGTTTGTGAATGACTGCTTCAC 1464
Query 1378 ACCTGATTT-ACAGAGGTCTATTTTTTAGTTGCTACAATCTTCAGAACAAGGTCATTGTT 1436
||||| ||| || ||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1465 ACCTG-TTTCACTGAGGTCTATTTTT-AGTTGCTACAATCTTCAGA-CAAGGTCATTGTT 1521
Query 1437 AATCTGATATTTG 1449
|||||||||||||
Sbjct 1522 AATCTGATATTTG 1534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71435375535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5