BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496568
Length=2409
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63800.1 | Symbols: MUM2, BGAL6 | Glycosyl hydrolase family ... 3618 0.0
> AT5G63800.1 | Symbols: MUM2, BGAL6 | Glycosyl hydrolase family
35 protein | chr5:25530055-25535849 FORWARD LENGTH=2596
Length=2596
Score = 3618 bits (1959), Expect = 0.0
Identities = 2293/2448 (94%), Gaps = 47/2448 (2%)
Strand=Plus/Plus
Query 1 AACACCTCAACAGAGGATCCAAACTTTTCCCAATTATTGCAAGTCAATCGATTTGtatat 60
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1 AACACATCAACAGAGGATCCAAACTTTTCCCAATTATTGCAAGTCAATCGATTTGT-T-T 58
Query 61 atatatataAAGCTCCCAAATCTCAAATCTC--A----AAA--TTTTATTAAACGCCTAC 112
|| |||||||||||||||||||||||||||| | ||| |||||||||||||||||
Sbjct 59 ATCTATATAAAGCTCCCAAATCTCAAATCTCAAATCTCAAATTTTTTATTAAACGCCTAC 118
Query 113 ATATATTACTCACACTTGTTTTCAGATCAT--A------------A---ATATATAATGC 155
|||||||||||||||||||||||||||||| | | |||||||||||
Sbjct 119 ATATATTACTCACACTTGTTTTCAGATCATAAAGTTTTTTCTTGGATTTATATATAATGC 178
Query 156 ACTAACACATACA-A-CCACATGCTTACACACATGTTCGAACTGTAACCAGTTAAAGAAA 213
||||| ||||||| | ||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 179 ACTAATACATACACACCCACATGCTTACACACATGTTCGAACTGTAATCAGTAAAAGAAA 238
Query 214 CATCAGAGAGGAAGAGAAGAAGAAGGAAAGATGGAG--GCGG-C-TCGGGTCTTCGGGTT 269
||||||||||||||||||| ||||| |||||||||| | || | || ||||||||||||
Sbjct 239 CATCAGAGAGGAAGAGAAGGAGAAGAAAAGATGGAGATG-GGTCGTCTGGTCTTCGGGTT 297
Query 270 GTGTTTGATTC---TTGTGGGTATGTTTCTTGTATTCTCCGGCGGTGCTACGGCGGCGAA 326
||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 298 GTGTTTGATTCTTATTGTGGGTACGTTTCTTGAATTCTCCGGCGGTGCTACGGCGGCGAA 357
Query 327 GGGAGTTACGTACGATGGACGGTCTTTGATTATCGATGGACAGAGGAAACTTCTCTTCTC 386
|||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 358 GGGAGTAACGTACGACGGACGGTCTTTGATAATCGATGGACAGAGGAAGCTTCTCTTCTC 417
Query 387 CGGTTCCATTCACTATCCTCGCAGCACGCCCGAGATGTGGCCGTCTCTGATAAAAAAGAC 446
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 418 CGGTTCCATCCACTATCCTCGCAGCACACCCGAGATGTGGCCGTCTCTGATAAAAAAGAC 477
Query 447 AAAGGAGGGGGGCATCGATGTGATCCAAACGTACGTTTTCTGGAACCTCCATGAGCCTAA 506
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AAAGGAAGGAGGCATCGATGTGATCCAAACGTACGTTTTCTGGAACCTCCATGAGCCTAA 537
Query 507 GCTCGGACAGTATGATTTTAGTGGAAGAAACGATTTAGTGAAGTTTATTAAAGAAATTAG 566
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GCTTGGACAGTATGATTTTAGTGGAAGAAACGATTTAGTGAAGTTTATTAAAGAAATTAG 597
Query 567 ATCACAAGGTCTCTATGTCTGTCTACGTATTGGACCCTTCATAGAAGCAGAGTGGAATTA 626
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 598 ATCACAAGGTCTCTATGTCTGTCTACGTATTGGACCCTTCATCGAAGCCGAGTGGAATTA 657
Query 627 CGGGGGATTGCCATTTTGGTTAAGAGATGTACCCGGTATGGTATACCGAACCGACAATGA 686
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 658 CGGGGGATTGCCATTTTGGTTACGGGATGTACCCGGTATGGTATACCGAACCGACAATGA 717
Query 687 ACCCTTCAAGTTCCACATGCAAAAATTCACCACTAAGATCGTAAATTTGATGAAATCTGA 746
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 718 GCCCTTCAAGTTCCACATGCAAAAATTCACCGCTAAGATCGTAGATTTGATGAAATCTGA 777
Query 747 GGGCTTATATGCTTCTCAAGGCGGTCCAATTATTCTTTCTCAGATCGAGAACGAGTATGC 806
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 778 GGGCTTATATGCTTCTCAAGGAGGTCCAATTATTCTTTCTCAGATCGAGAACGAGTATGC 837
Query 807 AAACGTGGAGGCGGCTTTCCATGAGAAAGGAGCATCGTACATCAAGTGGGCAGGCCAAAT 866
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 838 AAACGTGGAGGGGGCTTTCCATGAGAAAGGAGCATCGTACATCAAGTGGGCAGGTCAAAT 897
Query 867 GGCGGTCGGGCTTAAGACCGGAGTGCCATGGATCATGTGCAAGTCGCCCGACGCTCCTGA 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GGCGGTCGGGCTTAAGACCGGAGTGCCATGGATCATGTGCAAGTCGCCCGACGCTCCTGA 957
Query 927 TCCCGTGATCAATACGTGCAACGGGATGAGATGCGGCGAGACGTTTGCC-GGACCAAACT 985
||||||||||||||| ||||||||||||| |||||||||||| ||| || ||||||||||
Sbjct 958 TCCCGTGATCAATACCTGCAACGGGATGAAATGCGGCGAGACTTTT-CCTGGACCAAACT 1016
Query 986 CACCTAATAAGCCGAAAATGTGGACTGAGGATTGGACATCATTCTTTCAGGTTTATGGAA 1045
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1017 CACCCAATAAGCCGAAAATGTGGACTGAGGATTGGACTTCATTCTTTCAGGTTTATGGAA 1076
Query 1046 CAGAGCCCTATATTAGATCTGCCGAGGATATTGCTTTCCATGCCGCTCTTTTCATTGCAA 1105
|||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 1077 AAGAGCCTTATATTAGATCTGCTGAGGATATTGCTTTCCATGCCGCTCTTTTCGTTGCAA 1136
Query 1106 AAAATGGAAGTTACATCAACTATTACATGTACCATGGTGGAACAAACTTTGGAAGGACTT 1165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 AAAATGGAAGTTACATCAACTATTACATGTACCATGGTGGAACAAACTTTGGAAGGACTT 1196
Query 1166 CATCTTCATATTTCATTACAGGATACTATGACCAAGCTCCTCTTGACGAATACGGTCTTT 1225
||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1197 CATCTTCGTATTTCATTACAGGATACTATGATCAAGCTCCTCTCGACGAATACGGTCTTT 1256
Query 1226 TAAGACAGCCTAAGTACGGTCATTTGAAGGAGCTTCACGCTGCAATAAAATCCTCTGCAA 1285
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1257 TAAGACAGCCTAAGTACGGTCATTTGAAGGAGCTTCACGCTGCGATAAAATCCTCTGCAA 1316
Query 1286 ATCCTCTGCTTCAAGGGAAGCAAACGATTCTATCCTTGGGACCAATGCAACAGGCTTATG 1345
|||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1317 ATCCTCTGCTTCAAGGAAAGCAAACGATTCTCTCCTTGGGACCAATGCAACAAGCTTATG 1376
Query 1346 TCTTTGAAGACGCGAGCAGTGGATGCGTTGCGTTTCTGGTGAACAATGACGCCAAAGTCA 1405
||||||||||||||| || ||||||||||||||||||||| ||||||||||| |||| ||
Sbjct 1377 TCTTTGAAGACGCGAACAATGGATGCGTTGCGTTTCTGGTAAACAATGACGCTAAAGCCA 1436
Query 1406 TTCAAATACAATTCAGAAA-AAGTTCGTATAGCTTGAGTCCCAAGTCAATTGGTATTCTT 1464
|||||||||||||||||| || | |||||||||||||||||||||||||||||||||||
Sbjct 1437 GTCAAATACAATTCAGAAACAA-TGCGTATAGCTTGAGTCCCAAGTCAATTGGTATTCTT 1495
Query 1465 CAGAACTGCAAAAACCTAATTTATGAAACAGCAAAAGTGAATGTGGAGAAGAATAAGAGA 1524
||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| ||||
Sbjct 1496 CAGAACTGCAAAAACCTAATTTATGAAACTGCAAAAGTGAATGTGAAGATGAATACGAGA 1555
Query 1525 GTTACAACGCCGGTTCAAGTGTTCAACGTTCCCGAGAAGTGGGAAGGT-TTTAGAGAAAC 1583
||||||||||||||||||||||||||||||||||| || ||| || | |||||||||||
Sbjct 1556 GTTACAACGCCGGTTCAAGTGTTCAACGTTCCCGATAACTGG-AATTTGTTTAGAGAAAC 1614
Query 1584 AATTCCAGCATTCTCAGGCACATCTTTGAAGGCAAATGCTTTGTTGGAACACACTAATTT 1643
||| || |||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1615 AATCCCTGCATTCCCAGGCACATCTTTGAAGACAAATGCTTTGTTGGAACACACTAATTT 1674
Query 1644 GACCAAGGACAAAACTGATTATCTTTGGTACACTTCAAGCTTTAAGCCGGATTCACCCTG 1703
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1675 GACAAAGGACAAAACTGATTATCTTTGGTACACTTCAAGCTTTAAGCTGGATTCACCCTG 1734
Query 1704 CACGAACCCGTCTATCTACATTGAATCATTAGGACATGTTGTTCACGTGTTCGTCAACAA 1763
|||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||
Sbjct 1735 CACGAACCCGTCTATCTACACAGAATCATCAGGACATGTTGTCCACGTGTTCGTCAACAA 1794
Query 1764 CGCACTAGCAGGATCTGGACATGGAAGCAGAGACATAAAGGTAGTTAAACTTCAAGTTCC 1823
||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||
Sbjct 1795 TGCACTAGCAGGATCTGGACATGGAAGCAGAGACATAAGGGTAGTTAAACTACAAGCTCC 1854
Query 1824 GGCTAGCTTAACCAATGGACAAAACAGTATATCAATCCTCAGCGGCATGGTTGGTCTACC 1883
|| |||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1855 GGTTAGCTTAATCAATGGACAAAACAATATATCGATCCTCAGCGGCATGGTTGGTCTACC 1914
Query 1884 GGACTCTGGAGCTTACATGGAGAGGAAATCTTATGGACTAACCAAAGTACAAATCAGCTG 1943
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1915 GGACTCTGGAGCTTACATGGAGAGGAGATCTTATGGACTAACCAAAGTACAAATTAGCTG 1974
Query 1944 TGGTGGGACAAAACCAATCGATTTGAGTGGATCTCAATGGGGTTACTCGGTGGGTTTGCT 2003
||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1975 TGGCGGGACAAAACCCATCGATTTGAGTAGATCTCAATGGGGTTACTCGGTGGGTTTGCT 2034
Query 2004 TGGAGAGAAAGTTAGGTTACAGCAATGGAGGAATTTAAATAGAGTGAACTGGAGTATGAA 2063
||||||||||||||||||| | ||||||| |||||||||||||||||| |||||||||||
Sbjct 2035 TGGAGAGAAAGTTAGGTTATATCAATGGAAGAATTTAAATAGAGTGAAGTGGAGTATGAA 2094
Query 2064 TAATGCTGGACTCATTAAGAACCGCCCTCTCGTTTGGTACAAGATAATATTTGATGGGCC 2123
||| |||||||| |||||||||||||| |||| ||||||||||| || |||||||||||
Sbjct 2095 TAAAGCTGGACTAATTAAGAACCGCCCCCTCGCTTGGTACAAGACAACGTTTGATGGGCC 2154
Query 2124 GAATGGAGATGGGCCAGTGGGGCTGA-ACATGTCGAGTATGGGTAAAGGAGAAATTTGGG 2182
||||||||||||||| ||||| || | |||||||||||||||||||||||||||||||||
Sbjct 2155 GAATGGAGATGGGCCCGTGGGCCT-ACACATGTCGAGTATGGGTAAAGGAGAAATTTGGG 2213
Query 2183 TGAATGGTGAAAGCATTGGTCGTTATTGGGTCTCATTCCTCACTCCTTCTGGACATCCTT 2242
|||||||||||||||||||||||||||||||||| || ||||| ||| ||||||| ||||
Sbjct 2214 TGAATGGTGAAAGCATTGGTCGTTATTGGGTCTCGTTTCTCACCCCTGCTGGACAACCTT 2273
Query 2243 CTCAATCTATATATCATATTCCTCGGGAGTTTTTAAAACCATCTGGAAATTTATTGGTGG 2302
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 2274 CTCAATCTATATATCATATTCCTCGGGCGTTCTTAAAACCATCTGGAAATTTATTGGTGG 2333
Query 2303 TATTTGAAGAGGAAGGTGGTGATCCTCTTGGGATATCTTTGAATACAATATCGGTTATTG 2362
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2334 TATTTGAAGAGGAAGGTGGTGATCCTCTTGGGATATCTTTGAATACAATATCGGTTGTTG 2393
Query 2363 GTTCGAACCGAGCTCAATCTCAACTT-TCCTGAATATTAtttttttAA 2409
|||||| | ||||||||||||| || ||||||| |||||||||||||
Sbjct 2394 GTTCGAGTCAAGCTCAATCTCAA-TTCTCCTGAAGATTATTTTTTTAA 2440
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119627898735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5