BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496598
Length=763
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64040.2 | Symbols: PSAN | photosystem I reaction center sub... 1230 0.0
> AT5G64040.2 | Symbols: PSAN | photosystem I reaction center subunit
PSI-N, chloroplast, putative / PSI-N, putative (PSAN)
| chr5:25628588-25629615 REVERSE LENGTH=854
Length=854
Score = 1230 bits (666), Expect = 0.0
Identities = 734/765 (96%), Gaps = 12/765 (2%)
Strand=Plus/Plus
Query 1 ATCCTCATTCATCGCTAATACTAAAATCTGATCTCTTCCTTCCTCACTCACCAATCAAAC 60
||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 99 ATCCTCATTCATCTCTAATACTAAAATCTAATCTCTTCCTTGCTCACTCACCAATCAAAC 158
Query 61 TCaaaaaaaCTCTTGAATTTTTCAAGAACAAAAGAAAAAGAGATCTTTAATGGCGGCCAT 120
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 159 TC-AAAAAACTCTTGAATTTTTCAAGAACAAAAGAAAAAGACATCTTTAATGGCGGCCAT 217
Query 121 GAACTCGAGTGTTCTCACTTGCAGCTACGCAATTGCTGGTTCTGGCTCAGTAGAGCTAAA 180
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 218 GAACTCGAGTGTTCTCACTTGCAGCTACGCAATTGCTGGCTCTGGCTCGGTAGAGCTTAA 277
Query 181 CCAGAAAGTTGGTTTGGTGAATTCATCAGTTGGGTTTGGTCAGAAGAAACAGATGATTAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 CCAGAAAGTTGGTTTGGTGAATTCATCAGTTGGGTTTGGTCAGAAGAAACAGATGATTAT 337
Query 241 GCCTGTGATCAAAGCTCAACGAGTTGTTGGTGATGATGTTGATGGATCTAATGGAAGAAG 300
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 338 GCCTGTGATCAAAGCTCAACGCGTTGTTGGTGATGATGTTGATGGATCTAATGGAAGACG 397
Query 301 ATCAGCCATGGTTTTCTTAGCAGCTACGCTCTTCTCCACTGCTGCTGTTTCTGCTTCTGC 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 398 ATCAGCCATGGTTTTCTTAGCAGCTACACTCTTCTCCACTGCTGCTGTTTCTGCTTCTGC 457
Query 361 TAATGCTGGCGTCATCGATGAATACCTCGAGAGGAGCAAAGCCAACAAAGAACTTAATGA 420
||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||
Sbjct 458 TAATGCTGGCGTCATTGACGAATACCTCGAGAGGAGCAAAACCAACAAAGAACTTAATGA 517
Query 421 TAAGAAGAGATTGGCAACAAGTGGAGCAAACTTTGCGAGAGCATTCACTGTACAATTCGG 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 518 TAAGAAGAGATTGGCAACAAGTGGAGCAAACTTTGCGAGAGCATTCACTGTTCAATTCGG 577
Query 481 AAGCTGCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGAAAGT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 578 AAGCTGCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG----T 633
Query 541 TCCATTTATCTCAGAAGAT-TTGGCTTTGGAATGCGAAGGCAAGGACAAGTACCAGTGTG 599
||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||
Sbjct 634 TCCATTTATCTCAGAAGATATTG-CTTTGGAATGCGAAGGCAAGGACAAGTACAAGTGTG 692
Query 600 GTTCCAATGTTTTCTGGAAATGGTGAACAACTT-GTTTGTTTTCATCTATTCTTATATAA 658
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 693 GTTCCAATGTTTTCTGGAAATGGTGAAGAACTTTGTTTGTTTTCATCTATTCTTATATAA 752
Query 659 ATCCAACAATGTATCTATATCTCTCTCTCTATTCATGAAAGTTCTCGCATCCATTTGAAT 718
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 753 ATCCAACAATGTATCTAT--CTCTCTCT--ATTCATGAAAGTTCTCGCATCCATTTGAAT 808
Query 719 CTATCAAGTTAAAACTCTATTAAGAGATTAGGAAGCATTATTTTG 763
|||||||| |||||||||||| ||||||||||| |||||||||||
Sbjct 809 CTATCAAGCTAAAACTCTATTGAGAGATTAGGATGCATTATTTTG 853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37072800486
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5