BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496608
Length=1276
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64120.1 | Symbols: | Peroxidase superfamily protein | chr5... 1967 0.0
AT5G39580.1 | Symbols: | Peroxidase superfamily protein | chr5... 547 8e-155
> AT5G64120.1 | Symbols: | Peroxidase superfamily protein | chr5:25659306-25661002
REVERSE LENGTH=1288
Length=1288
Score = 1967 bits (1065), Expect = 0.0
Identities = 1218/1290 (94%), Gaps = 18/1290 (1%)
Strand=Plus/Plus
Query 1 ACTAAAACTTGAACACACACTTCATCATCTCTAAAACCCTAAAATATAAACACAAGATGG 60
|||| ||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1 ACTATAACTTAAACACACACTTCATCTTCTCTAAAACCCTAAAATTTAAACACAAGATGG 60
Query 61 GTTTGGTTAGATCATTGTGCTTATTCATAACCTTCCTTAGTTGTCTCATCATCTCGGTTC 120
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 61 GTTTGGTTAGATCATTGTGCTTATTAATAACCTTCCTTAATTGTCTCATCATCTCGGTTC 120
Query 121 ATGGCCAAGCCACCGGAAGGCCGGGTCCTGTTTCCGGCACAAGGATTGGGTTTTACTTGA 180
||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 121 ATGGCCAAGCCACCGCAAGGCCTGGTCCTGTTTCCGGCACTAGGATTGGGTTTTACTTAA 180
Query 181 CCACGTGTCCTAGAGCTGAAACCATTGTCCGAAACGCCGTGAATGCTGGTTTCAGTTCTG 240
| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 181 CTACGTGTCCTAGAGCTGAGACTATTGTCCGAAACGCCGTGAATGCTGGTTTCAGTTCTG 240
Query 241 ACCCCAGAATCGCTCCCGGAATACTGAGAATGCATTTCCACGACTGTTTTGTCCAAGGTT 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACCCCAGAATCGCACCCGGAATACTGAGAATGCATTTCCACGACTGTTTTGTCCAAGGTT 300
Query 301 GTGACGGTTCGATCCTGATATCGGGAGCTAACACCGAGAGAACCGCCGGTCCGAACCTCA 360
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 301 GTGACGGTTCGATCCTTATATCCGGAGCTAACACCGAGAGAACCGCCGGTCCGAACCTCA 360
Query 361 ATCTCCGAGGGTTTGAAGTCATCGACAACGCCAAAACGCAGCTCGAAGCCGCGTGTCCAG 420
|||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 361 ATCTCCAAGGATTTGAAGTCATAGACAACGCCAAAACGCAGCTCGAAGCCGCGTGTCCTG 420
Query 421 GAGTTGTCTCTTGTGCTGATATTTTAGCCTTAGCCGCTCGTGACACAGTCGTTCTCACGC 480
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
Sbjct 421 GAGTTGTCTCTTGTGCTGATATTTTAGCATTAGCCGCTCGTGACACAGTCATTCTCACTC 480
Query 481 AAGGAACAGGATGGCAAGTACCAACGGGACGTAGAGATGGCCGAGTTTCTTTGGCTTCGA 540
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 AAGGAACAGGCTGGCAAGTACCAACGGGACGTAGAGATGGTAGAGTTTCTTTGGCTTCGA 540
Query 541 ATGCTAACAATCTCCCCGGTCCACGTGACTCCGTTGCCGTTCAACAACAGAAATTCTCCG 600
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 541 ATGCTAACAATCTCCCTGGTCCCCGTGACTCCGTTGCCGTTCAACAACAGAAATTCTCCG 600
Query 601 CTTTAGGACTCAATACTCGTGATCTCGTCGTCCTCGTCGGAGGACACACGATCGGAACAG 660
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CCTTGGGACTCAATACTCGTGATCTCGTCGTCCTCGTCGGAGGACACACGATCGGAACAG 660
Query 661 CAGGATGTGGTGTATTCAGGAACAGGCTATTCAACACCACCGGACAACCCGCAGATCCAA 720
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 661 CAGGATGTGGTGTATTCAGGAACAGGCTATTCAATACCACCGGACAAACCGCAGATCCAA 720
Query 721 CCATCGACCCAACATTTTTGGCGCAGCTTCAAACACAATGTCCCCAAAACGGCGACGCTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 721 CCATCGACCCAACATTTTTGGCGCAGCTTCAAACACAATGTCCCCAAAACGGCGACGGTT 780
Query 781 CAGTGCGCGTGGATCTCGACACCGGAAGCGGAACCACTTGGGACACTTCATACTACAACA 840
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 781 CAGTGCGCGTGGATCTCGACACCGGAAGCGGAAGCACTTGGGACACTTCTTACTACAACA 840
Query 841 ACCTAAGCCGTGGCCGTGGAGTTCTCCAATCCGATCAAGTCCTTTGGACCGATCCAGCCA 900
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ACCTAAGCCGTGGGCGTGGAGTTCTCCAATCCGATCAAGTCCTTTGGACCGATCCAGCCA 900
Query 901 CTAGACCCATAGTGCAACAATTGATGGCTCCTAGAAGCACCTTCAACGTTGAGTTTGCGA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CTAGACCCATAGTGCAACAATTGATGGCTCCTAGAAGCACCTTCAACGTTGAGTTTGCGA 960
Query 961 GGTCAATGGTCAGGATGAGTAATATCGGTGTGGTTACTGGGGCTAATGGGGAAATCCGTA 1020
||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 961 GGTCAATGGTCAGAATGAGTAATATCGGTGTGGTTACCGGAGCTAATGGGGAAATCCGTA 1020
Query 1021 GGGTTTGCTCTGCGGTTAATTAATTAACCGATTAAAATC---CGT--T----T--CATGG 1069
|||||||||||||||||||||||||||||||||| |||| ||| | | ||||
Sbjct 1021 GGGTTTGCTCTGCGGTTAATTAATTAACCGATTAGAATCTGTCGTGATAAACTTTCATGA 1080
Query 1070 CCCTGAGTACTTGTTTCGAGTGTGATTTTAATTTCAACAATAAACCAACCAATAGAAAAC 1129
| | ||||||||||||||||||| ||||||| | ||||||||| ||||||||||||||
Sbjct 1081 CGCAAAGTACTTGTTTCGAGTGTGGTTTTAATCTGAACAATAAATAAACCAATAGAAAAC 1140
Query 1130 GACATACATGAAAGaaaaaaaCCCAAAAGTGGGTTGATGAAAATTGTATCTATAAG-TGT 1188
|||||||| || ||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1141 GACATACA--AA-GAAAAAA-CCCAAAAGTGGGTTGATGAAAATTGTATCTATAAGGTGT 1196
Query 1189 TGGTATTCGATTTCTTTTGGTTTTAATTAATAAAA--TGTAATGTCTTCACAAAAATAGT 1246
||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||| |
Sbjct 1197 TGGTATTCGATTTCTTTTGGTTTTAGTTAAAAAAAACTGTAATGTCTTCACAAAAATATT 1256
Query 1247 ATAATGAGTTTGGTCCTACTTTGGCTTCTT 1276
|||||||||||||||||| ||||| |||||
Sbjct 1257 ATAATGAGTTTGGTCCTAGTTTGGATTCTT 1286
> AT5G39580.1 | Symbols: | Peroxidase superfamily protein | chr5:15847081-15849108
REVERSE LENGTH=1241
Length=1241
Score = 547 bits (296), Expect = 8e-155
Identities = 640/805 (80%), Gaps = 27/805 (3%)
Strand=Plus/Plus
Query 255 CCCGGAATACTGAGAATGCATTTCCACGACTGTTTTGTCCAAGGTTGTGACGGTTCGATC 314
||||| ||||||||||||| ||| || || ||||||||||||||||| |||||| |
Sbjct 250 CCCGGGTTACTGAGAATGCACAACCATGATTGCTTTGTCCAAGGTTGTGATGGTTCGGTG 309
Query 315 CTGATATCGGGAGCTAACACCGAGAGAACCGCCGGTC-CGAACCTCAATCTCCGA-GGGT 372
|| |||||||| ||||| | || |||||||| || | | ||| | || |||| | || |
Sbjct 310 CTTTTATCGGGACCTAACTCTGAAAGAACCGCTGG-CGCAAACGTTAACCTCC-ATGGTT 367
Query 373 TTGAAGTCATCGACAACGCCAAAACGCAGCTCGAAGCCGCGTGTCCAGGAGTTGTCTCTT 432
|||| ||||| ||| | ||||| | ||||||||| || || ||||| || ||||||||||
Sbjct 368 TTGAGGTCATTGACGATGCCAAGAGGCAGCTCGAGGCAGCATGTCCTGGTGTTGTCTCTT 427
Query 433 GTGCTGATATTTTAGCCTTAGCCGCTCGTGACACAGTCGTTCTCACGC-AA-GGAAC-AG 489
|||||||||| || |||||||| |||||||| | || ||||| | | || || || |
Sbjct 428 GTGCTGATATCTTGGCCTTAGCGGCTCGTGATTCGGT--TTCTCTCACAAACGG-ACAAA 484
Query 490 GATGGCAAGTACCAACGGGACGTAGAGATGGCCGAGTTTCTTTGGCTTCGAATGCTAACA 549
| |||||||| ||||| |||||||||||||| ||||||| ||||| ||||| | |||||
Sbjct 485 GTTGGCAAGTTCCAACAGGACGTAGAGATGGAAGAGTTTCCTTGGCATCGAACGTTAACA 544
Query 550 ATCTCCCCGGTCCACGTGACTC-CGTTGCCGTTCAACAACA-GAAATTCTCCGCTTTAGG 607
|||| || |||| ||||||| | | ||| |||||||| | ||||||||||||||| |
Sbjct 545 ATCTTCCTTCTCCAAGTGACTCTC-TAGCCATTCAACAA-AGGAAATTCTCCGCTTTTCG 602
Query 608 ACTCAATACTCGTGATCTCGTCGTC-CTCG-T--CGGAGGACACACGATCGGAACAGCAG 663
||||| ||||| ||||||||| | || | | ||||||||||||||||||||||| |
Sbjct 603 CCTCAACACTCGCGATCTCGTC-ACTCTTGTTGGAGGAGGACACACGATCGGAACAGCTG 661
Query 664 GATGT-GGTGTATTCAGGAACAGGCTATTCAACACCACCGGACAAC-CCGCAGATCCAAC 721
|||| ||| || ||| ||||||| |||||||| | | |||| ||| | |||||||||||
Sbjct 662 CATGTGGGTTTA-TCACGAACAGGATATTCAACTCGAGCGGA-AACACAGCAGATCCAAC 719
Query 722 CATCGACCCAACATTTTTGGCGCAGCTTCAAACACAATGTCCCCAAAACGGCGACGCTTC 781
|| |||| ||||||| | | || ||||||| || ||||||||||||||||||| ||
Sbjct 720 AATGGACCAAACATTTGTACCACAACTTCAAAGACTTTGTCCCCAAAACGGCGACGGATC 779
Query 782 AGTGCGCGTGGATCTCGACACCGGAAGCGGAACCACTTGGGACACTTCATACTACAACAA 841
|| || || ||||| ||||||||||| |||| ||||| ||||| || || | || |||
Sbjct 780 AGCACGTGTTGATCTTGACACCGGAAGTGGAAACACTTTTGACACATCTTATTTCATCAA 839
Query 842 CCTAAGCCGTGGCCGTGGAGTTCTCCAATCCGATCAAGTCCTTTGGACCGA-TCCAGCCA 900
|| |||||| | | ||| |||| ||||||||||| || ||||||| | | ||| ||||
Sbjct 840 TCTCAGCCGTAACAGAGGAATTCTTCAATCCGATCACGTTCTTTGGA-CTAGTCCGGCCA 898
Query 901 CTAGACCCATAGTGCAACAATTGATGGCTCCTAGAAGCACCTTCAACGTTGAGTTTGCGA 960
| ||| ||||||||||| | || ||||| |||||| ||| |||||| || |||| || |
Sbjct 899 CAAGATCCATAGTGCAAGAGTTTATGGCACCTAGAGGCAACTTCAATGTCCAGTTCGCAA 958
Query 961 GGTCAATGGTCAGGATGAGTAATATCGGTGTGGTTACTGGGG-CTAATGGGGAAATCCGT 1019
|||||||||| | ||||||||||| |||||| || |||| | ||||| ||||| |||
Sbjct 959 GGTCAATGGTTAAAATGAGTAATATTGGTGTGAAGAC-GGGGACAAATGGAGAAATTCGT 1017
Query 1020 AGGGTTTGCTCTGCGGTTAATTAAT 1044
|||||||||||||||||||||||||
Sbjct 1018 AGGGTTTGCTCTGCGGTTAATTAAT 1042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62750681250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5