BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496627
Length=1476
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64250.2 | Symbols: | Aldolase-type TIM barrel family prote... 2117 0.0
> AT5G64250.2 | Symbols: | Aldolase-type TIM barrel family protein
| chr5:25697354-25699212 REVERSE LENGTH=1538
Length=1538
Score = 2117 bits (1146), Expect = 0.0
Identities = 1377/1482 (93%), Gaps = 42/1482 (3%)
Strand=Plus/Plus
Query 27 ATAGAGTGGAGTGATGTAGTATGTGACGAAAAGCTTCGCAATGTGTTTGTCATCGCTTA- 85
|||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 66 ATAGAGTGGAGTGATGTAGTATGTGACGAAAAGCTTCGAAATGTGTTCGTCATTGCTTAG 125
Query 86 AAAGATCGAAACAAAATTATAATTTTCATATAGaaaaaaa---aCCCAAGTAAAAATTCG 142
||||||||| |||||||||| |||| || || ||||||| | |||||| ||||||||
Sbjct 126 AAAGATCGACACAAAATTAT--TTTTTATCTATAAAAAAAGGTAGCCAAGT-AAAATTCG 182
Query 143 ATTACGACTCT-GttttttttttttttttGGGTATA-AAACGAAGATGAGAACACTGAGA 200
||||||||||| |||||||||| | | | | | | ||||| | ||| || ||||
Sbjct 183 ATTACGACTCTGGTTTTTTTTTGTATAAAACG-A-AGATGTGAAGA-GTGAAGACCGAGA 239
Query 201 GAGATTTATAGCAGAGGAAAGTGAAATCATGAAAGGGATTCTAGGGTTTGAACACGGGAT 260
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 240 GAGATTTATAGCAGAGGAAAGTGAAATCATGAAAGGGATTCTAGGGTTTGAATACGGGAT 299
Query 261 AGTTCAGGCGCCATTAGGACCAGATATCTCCGGACCAGAGCTTGTAGCCGCAGTCGCTAA 320
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 300 AGTTCAGGCGCCATTAGGACCAGATATCTCCGGACCAGAGCTTGTAGCCGCCGTCGCTAA 359
Query 321 TGCCGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGGAGTGTCCTGATTACTTGAGAGA 380
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGGAGTGTCCTGATTACTTGAGAGA 419
Query 381 GCTTATAAGAAAGACAAAGACATTGACAGACAAACCATTTGGGATCGGTGTTGTTCTTGC 440
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 GCTTATAAGAAAGACAAAGACATTGACAGAGAAACCATTTGGGATCGGTGTTGTTCTTGC 479
Query 441 GTTTCCTCATGATTTGAACATTAAGGCAATCCTAGAAGAGGAAGTTGCTGTCTTGCAGCT 500
||||||||||||||||||||||||| ||||| |||||||| |||| ||||||||||||||
Sbjct 480 GTTTCCTCATGATTTGAACATTAAGACAATCTTAGAAGAGAAAGTGGCTGTCTTGCAGCT 539
Query 501 TTATTGGGGTGATTGTTCACAGGAGCTTGTGGATGATGCTCACCGTGCCGGTCTCAAAGT 560
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 540 TTATTGGGGTGATTGTTCACAGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGT 599
Query 561 TGTTCCTCAGGTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGC 620
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TATTCCTCAGGTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGC 659
Query 621 CATTATTGTCCAAGGGCATGAAGCAGGTGGGCATGTTATTGGCAAGGATGGTCTCTTTTC 680
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CATTATTGTCCAAGGGCGTGAAGCAGGTGGGCATGTTATTGGCAAGGATGGTCTCTTTTC 719
Query 681 ATTGTTGCCAAGAGTGGTGGATTTAGTTGGGGAACGCGATATTCCCGTTATCGCTGCCGG 740
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 720 ATTGTTGCCAAGAGTGGTGGATTTAGTTGGGGAACGCGATATTCCCGTTATTGCTGCTGG 779
Query 741 AGGAATTGTGGATGCACGCGGTTATGTCGCAGCCTTGTCACTTGGTGCTCAAGGGGTCTG 800
|||||||||||||| |||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 780 AGGAATTGTGGATGGACGCGGTTATGTTGCAGCTTTGTCACTTGGGGCTCAAGGGGTCTG 839
Query 801 TCTAGGCACAAGATTTGTGGCGACTCATGAAAGCTATGCACACCCAATATACAAAAGGAA 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TCTAGGCACAAGATTTGTGGCGACTCATGAAAGCTATGCACACCCAATATACAAAAGGAA 899
Query 861 GTTGGTTGAATATGAAAAAACAGAATACACAGATGTGTTTGGAAGAGCAAGGTGGCCTGG 920
|||| |||||||||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 900 GTTGATTGAATATGAAAAAACCGAATACACGGATGTATTTGGAAGAGCAAGGTGGCCTGG 959
Query 921 TGCGCCTCAACGTGTTCTGGAGACACCTTTCTTTGATGACTGGAGGTCTCTTCCGGCTGG 980
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 960 TGCGCCTCAACGTGTTCTGGAGACGCCTTTCTTTGATGACTGGAGGTCTCTTCCGGCTCA 1019
Query 981 TGAGAATGAAGTTAATCAACCTGTTATTGGACGTTCCACCATACATGGCGTTGAAAAGGA 1040
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1020 TGAGAATGAAGTTAACCAACCTATTATTGGACGTTCCACCATACATGGCGTTGAAAAGGA 1079
Query 1041 GATAAGAAGATTTTCAGGAACAGTACCAAACATGACGACAACGGGCGACTTAGAGAGTAT 1100
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1080 GATAAGAAGATTTTCAGGAACAGTACCAAACATGACGACAACAGGCGACTTAGAGAGTAT 1139
Query 1101 GGCTATGTATGCAGGCCAAAGCGTAGGCCTTATCAAGGAGATTTTACCGGCTGGAGAGGT 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GGCTATGTATGCAGGCCAAAGCGTAGGCCTTATCAAGGAGATTTTACCGGCTGGAGAGGT 1199
Query 1161 AGTGAAAAGTCTTGTGGAAGAAGCTCAGGCTCTGATCCTCCAAAAGTTCAACAATGCTAC 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 AGTGAAAAGTCTTGTGGAAGAAGCTCAGGCTCTGATCCTCCAAAAGTTCAACAATGCTAC 1259
Query 1221 TAC-A--TGATGCAGTGC-AGCCTCAAATCATGAGCAACCATAAACTTTACTGCTTTTGG 1276
||| | ||||||||| | |||||||||||||||| || |||||||||||||||||||||
Sbjct 1260 TACTACATGATGCAGTCCCAGCCTCAAATCATGAGAAAACATAAACTTTACTGCTTTTGG 1319
Query 1277 AATCGG-ATGAGAATAGTCTCATCTAATGTAA-T--G-TA--TA---T-CT-T------- 1317
|||||| |||| |||||||||||||||||||| | | || || | || |
Sbjct 1320 AATCGGGATGAAAATAGTCTCATCTAATGTAAATAAGGTACATAAACTTCTGTATCTCTC 1379
Query 1318 GTGTTGTTTTCAACTAGAAAAATTGTGTCCATCATGTGTAATCCATTCC-TCTTACCTTG 1376
||||||||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 1380 GTGTTGTTTTCAACTAGAAAAATTGTGTCCATCATGTGTAATCCAG-CAATAG-ACCTTG 1437
Query 1377 -GTATTGAATTAAGTATACTTCTTATGGTTGTTTGTTTCCAGTGAAACTTCCCACACATC 1435
|||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1438 TGTATTGGATTAAGTATACTTCTTATGGTTGTTTGTTTCCTGTGAAACTTTCCACACAT- 1496
Query 1436 TT-AGTTTCATATTAAATTTCTTAGCGAATCAATCATTTCAT 1476
|| | |||||| |||||||||||||||||||||| |||||||
Sbjct 1497 TTCA-TTTCATTTTAAATTTCTTAGCGAATCAATTATTTCAT 1537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72790790250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5