BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496632
Length=1978
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64300.1 | Symbols: ATGCH, GCH, ATRIBA1, RFD1 | GTP cyclohyd... 2948 0.0
AT2G22450.1 | Symbols: | riboflavin biosynthesis protein, puta... 392 6e-108
> AT5G64300.1 | Symbols: ATGCH, GCH, ATRIBA1, RFD1 | GTP cyclohydrolase
II | chr5:25718404-25721162 FORWARD LENGTH=2059
Length=2059
Score = 2948 bits (1596), Expect = 0.0
Identities = 1784/1873 (95%), Gaps = 19/1873 (1%)
Strand=Plus/Plus
Query 1 AAATTTTCGATTTTGTGACAAGGGTTTTTCTTAATTTCGTCTACGGATATAGAAAATGTC 60
||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAATTTTTGATTTTGCGATAAGGGTTTTTCTTAATTTCGTCTACGGATATAGAAAATGTC 60
Query 61 TTCCATCAATCTATCCTCATCATCTCCTTCCACCATATCTCTTTCCCGCTCAAGACTAAG 120
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 TTCCATCAATTTATCCTCATCATCTCCTTCCACCATCTCTCTTTCCCGCTCAAGACTAAG 120
Query 121 CCGAAGCTCTACTACATTACTCCATGGACTACACCGTGTTACTTTACCATCTAACCATCC 180
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 CCAAAGCTCTACTACATTACTCCATGGACTACATCGTGTTACTTTACCATCTAACCATCC 180
Query 181 A---TCAAAGTTTTCCATTAAAA-C--TACTGGAAAAGTTAAGGCTGCAGTGATCTCTAG 234
| |||| ||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 181 ATTGTCAACCTTTTCCATTAAAACCAATACTGGAAAAGTTAAGGCTGCAGTGATCTCTAG 240
Query 235 AGAAGATGATCTGCTCTCATTCACCAACGGAAACGCTCCTCTCTCAAATGGTTTTCTCAT 294
|||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||
Sbjct 241 AGAAGATGATCTGCTCTCATTCACCAACGGAAACACTCCTCTCTCAAATGGGTCTCTCAT 300
Query 295 TGATGATCGGACTGAAGAGCCATTAGAGGCTGATTCAGTTTCACTTGGAACACTTGCTGC 354
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 TGATGATCGGACCGAAGAGCCATTAGAGGCTGATTCGGTTTCACTTGGAACACTTGCTGC 360
Query 355 AGATTCAGCTCCTGCACCAGCCAATGGTTTTGTTACTGAAGATGATGACTTTGAGTTGGA 414
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 TGATTCTGCTCCTGCACCAGCCAATGGTTTTGTTGCTGAAGATGATGACTTTGAGTTGGA 420
Query 415 TTTGCCAACTCCAGGTTTCTCTTCTATCCCTCAGGCCATTGAAGACATACGCCAAGGAAA 474
||| |||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 421 TTTACCAACTCCTGGTTTCTCTTCTATCCCTGAGGCCATTGAAGATATACGCCAAGGAAA 480
Query 475 GCTTGTGGTGGTTGTGGATGATGAAGATAGAGAAAATGAAGGCGATTTGGTGATGGCTGC 534
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 481 GCTTGTGGTGGTTGTGGATGATGAAGATAGGGAAAATGAAGGGGATTTGGTGATGGCTGC 540
Query 535 TCAATTGGCAACACCTGAAGCTATGGCTTTTATTGTGAAACATGGAACTGGGATAGTTTG 594
||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 541 TCAGTTAGCAACACCTGAAGCTATGGCTTTTATTGTGAGACATGGAACTGGGATAGTTTG 600
Query 595 TGTGAGCATGAAAGAAGATGATCTCGAGAGATTGCACCTTCCTCTAATGGTGAATCAGAA 654
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 601 TGTGAGCATGAAAGAAGATGATCTCGAGAGGTTGCACCTTCCTCTAATGGTGAATCAGAA 660
Query 655 GGAAAACGAAGAAAAGCTCTCTACTGCATTTACAGTGACTGTGGATGCAAAACATGGTAC 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGAAAACGAAGAAAAGCTCTCTACTGCATTTACAGTGACTGTGGATGCAAAACATGGTAC 720
Query 715 AACAACAGGAGTATCAGCTCGTGACAGGGCAACAACGATATTGTCTCTTGCATCAAGAGA 774
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 721 AACAACGGGAGTATCAGCTCGTGACAGGGCAACAACCATATTGTCTCTTGCATCAAGAGA 780
Query 775 TTCAAAGCCTGAGGATTTCAACCGTCCAGGTCATATCTTCCCGCTGAAGTATCGGGAAGG 834
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 781 TTCAAAGCCTGAGGATTTCAATCGTCCAGGTCATATCTTCCCACTGAAGTATCGGGAAGG 840
Query 835 CGGGGTTCTGAAAAGGGCTGGCCACACTGAAGCATCTGTTGATCTTACTGTTTTAGCTGG 894
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 841 TGGGGTTCTGAAAAGGGCTGGACACACTGAAGCATCTGTTGATCTCACTGTTTTAGCTGG 900
Query 895 ACTGGATCCTGTTGGAGTACTTTGTGAAATTGTTGATGATGATGGTTCCATGGCTAGATT 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ACTGGATCCTGTTGGAGTACTTTGTGAAATTGTTGATGATGATGGTTCCATGGCTAGATT 960
Query 955 ACCAAAACTTCGTGAATTTGCCGCTGAGAATAACCTGAAAATTGTTTCCATCGCAGATTT 1014
|||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||
Sbjct 961 ACCAAAACTTCGTGAATTTGCCGCCGAGAACAACCTGAAAGTTGTTTCCATCGCAGATTT 1020
Query 1015 GATCAGATATAGAAGAAAGAGAGATAAATTAGTGGAACGTTCTTCTGCTGCTCGGATCCC 1074
|||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1021 GATCAGGTATAGAAGAAAGAGAGATAAATTAGTGGAACGTGCTTCTGCGGCTCGGATCCC 1080
Query 1075 AACAATGTGGGGACCTTTCACTGCTTACTGCTATAGGTCCATACTAGACGGAATAGAGCA 1134
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1081 AACAATGTGGGGACCTTTCACTGCTTACTGCTATAGGTCCATATTAGACGGAATAGAGCA 1140
Query 1135 CATAGCAATGGTTAAGGGTGAGATTGGTGACGGTCAAGACATTCTTGTGAGGGTTCATTC 1194
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1141 CATAGCAATGGTTAAGGGTGAGATTGGTGACGGTCAAGACATTCTCGTGAGGGTTCATTC 1200
Query 1195 TGAATGTCTCACAGGAGACATATTTGGGTCTGCAAGGTGCGATTGCGGGAACCAGCTAGC 1254
||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1201 TGAATGTCTAACAGGGGACATATTTGGGTCTGCAAGGTGTGATTGCGGGAACCAGCTAGC 1260
Query 1255 ACT-TGCAATGCAGCAGATAGAGGCTACTGGTCGTGGTGTGCTGGTTTACCTACGTGGAC 1313
||| | | ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1261 ACTCT-CGATGCAGCAGATCGAGGCTACTGGTCGCGGTGTGCTGGTTTACCTACGTGGAC 1319
Query 1314 ATGAAGGAAGAGGGATCGGTTTAGGACACAAGCTTCGAGCTTACAATCTACAAGATGCTG 1373
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1320 ATGAAGGAAGAGGGATCGGTTTAGGACACAAGCTTCGAGCTTACAATCTGCAAGATGCTG 1379
Query 1374 GTCGAGACACGGTTGAAGCTAATGAGGAATTAGGACTTCCTGTTGATTCTAGAGAGTATG 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GTCGAGACACGGTTGAAGCTAATGAGGAATTAGGACTTCCTGTTGATTCTAGAGAGTATG 1439
Query 1434 GAATTGGTGCACAGGTAATAAGGGATTTAGGCGTGAGGACAATGAAGCTGATGACGAATA 1493
|||||||||||||| |||||||||||||||| || |||||||||||||||||||| ||||
Sbjct 1440 GAATTGGTGCACAGATAATAAGGGATTTAGGTGTTAGGACAATGAAGCTGATGACAAATA 1499
Query 1494 ATCCGGCAAAGTATGTTGGTCTGAAGGGATACGGATTAGCCATTGTTGGGAGAGTCCCTC 1553
|||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1500 ATCCCGCAAAGTATGTTGGTTTGAAGGGATATGGATTAGCCATTGTTGGGAGAGTCCCTC 1559
Query 1554 TATTGAGTCTTATCACAAAGGAGAATAAGAGATATCTGGAGACAAAGCGGACCAAGATGG 1613
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 TATTGAGTCTTATCACGAAGGAGAATAAGAGATATCTGGAGACAAAGCGGACCAAGATGG 1619
Query 1614 GTCACATGTATGGCTTGAAGTTCAAAGGCGATGTTGTGGAGAAGACTGAGTCTGAATCTG 1673
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1620 GTCACATGTATGGCTTGAAGTTCAAAGGGGATGTTGTGGAGAAGATTGAGTCTGAATCTG 1679
Query 1674 AGTCCTAAGTTTGAAAACCAGGACGAACCGAATGGAATAAAGAAATATAGGTATAATACT 1733
||||||||| || ||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 1680 AGTCCTAAGCTTAAAAACCAGGACGAACCGAATGGAATCAAGAACTATAGATATAATACT 1739
Query 1734 Tga-aaaaacca-ggaaagaaattgacacagaagaagaagaagaagaaaaagaCTTTTGA 1791
| | ||||| || ||||||||||||||||||||||||| | ||| ||| ||| |||||
Sbjct 1740 TCACAAAAAACAAGGAAAGAAATTGACACAGAAGAAGA-G--GAA-AAA--GACATTTGA 1793
Query 1792 TCCGTCTGAGAAACTTGATTAGATTGGTTTATGTTCTAATCTAATCTTATCTGATAtttt 1851
|| |||||||||||||||||||||||||||||||||||||||||||| || |||| ||||
Sbjct 1794 TCTGTCTGAGAAACTTGATTAGATTGGTTTATGTTCTAATCTAATCTGATTTGAT-TTTT 1852
Query 1852 ttttACTTCTTGT 1864
||||| || ||||
Sbjct 1853 TTTTA-TT-TTGT 1863
> AT2G22450.1 | Symbols: | riboflavin biosynthesis protein, putative
| chr2:9530547-9532914 FORWARD LENGTH=1761
Length=1761
Score = 392 bits (212), Expect = 6e-108
Identities = 614/804 (76%), Gaps = 44/804 (5%)
Strand=Plus/Plus
Query 437 TCTATCCCTCAGGCCATTGAAGACATACGCCAAGGAAAGCTTGTGGTGGTTGTGGATGAT 496
||||| ||||| || |||||||| || || || || ||| | || || ||||| ||||||
Sbjct 429 TCTATTCCTCAAGCTATTGAAGATATTCGACATGGCAAGATGGTAGTTGTTGTAGATGAT 488
Query 497 GAAGATAGAGAAAATGAAGGCGATTTGGTGATGGCTGC-TCAATTGGCAACACCTGAAGC 555
|||||||||||||| ||||| |||||| | ||||| || || ||||| |||||||||||
Sbjct 489 GAAGATAGAGAAAACGAAGGAGATTTGATAATGGCGGCATC-TTTGGCTACACCTGAAGC 547
Query 556 TATGGCTTTTATTGTGAAA-CATGGAACTGGGATAGTTTGTGTGAGCATGAAAGAAGATG 614
|||||||||| |||| ||| ||||| ||||| || || |||||||||||||||| || |
Sbjct 548 TATGGCTTTTGTTGT-AAAGCATGGGACTGGAATCGTGTGTGTGAGCATGAAAGGCGAAG 606
Query 615 ATCTCG-AGAGATT-GCACCTTCCTCTAATGGTGAAT-CAG-AAGGAAAACGAAGAAAAG 670
| || | |||| || | | |||||| ||||||| || | | ||||| ||||| |||||
Sbjct 607 A-CTTGGAGAGGTTAG-AGCTTCCTTTAATGGT-AACGC-GTAAGGATAACGAGGAAAAA 662
Query 671 CTCT-CTACTGCATTTACAGTGACTGTGGATGCAAAACATGGTACAACAACAGGAGTATC 729
||| | || || || || || | ||||| |||||| | || ||| | ||||| || ||
Sbjct 663 CTCCGC-ACGGCCTTCACGGTTTCAGTGGACGCAAAAAAGGGAACATCCACAGGTGTCTC 721
Query 730 AGCTCGTGACAGGGCAACAA-CGATATTGTCTCTTGCATCAAGAGATTCAAAGCCTGAGG 788
||||||||| ||||| ||| | ||||| | |||||||||| ||||||||| ||||| |
Sbjct 722 AGCTCGTGATAGGGCG-CAAACAATATTAACCCTTGCATCAAAAGATTCAAAACCTGAAG 780
Query 789 ATTTCAACCGTCCAGGTCATATCTTCCCGCTGA-AGTATCGG-GAAGGCGGGGTTCTGAA 846
||||||| ||||| |||||||| || || ||| | || | | ||||| || ||||| ||
Sbjct 781 ATTTCAATCGTCCTGGTCATATTTTTCCTTTGAGA-TA-CAGAGAAGGTGGTGTTCTTAA 838
Query 847 AAGGGCTGGCCACACTGAAGCATCTGTTGATCTT-ACTGTTTTAGCTGGACTGGATCCTG 905
||| || || || || ||||| |||||||| ||| ||||| || || || | || || |
Sbjct 839 AAGAGCAGGGCATACAGAAGCCTCTGTTGA-CTTGACTGTGTTGGCCGGTTTAGAACCAG 897
Query 906 T-TGGAGTACTT-TGTGAAATTGTTGATGATGATGGTTCCATGGCTAGATTACCAAAACT 963
| | || || ||||| ||||| ||||||||||||||||||||||||||||||| |||
Sbjct 898 TATCT-GTT-TTATGTGAGATTGTAGATGATGATGGTTCCATGGCTAGATTACCAAGACT 955
Query 964 TCGTGAATTTGC-CGCTGAGAATAACCTGAAAATTG-TTTCCATCGCAGATTTGATCAGA 1021
|| |||| || | ||||| ||| ||||| || |||| ||||| ||||| ||||||
Sbjct 956 CCGCCAATTCGCTCAA-GAGAACAACTTGAAA-TTAATTTCAATCGCTGATTTAATCAGA 1013
Query 1022 TATAGAAG-AAAGAGAGATAAATTAGTGGAACGTTCTTCTGCTGCT-CGG--ATCCCAAC 1077
|| |||| ||| ||||| | | | || || ||| | |||| | | || || || ||
Sbjct 1014 TACCGAAGGAAA-AGAGAGAGACTGGTTGA--GTT-TACTGCGGTTGCGCCTATACCGAC 1069
Query 1078 AATGTGGGGACCTTTCACTGCTTACTGCTATAGGTCCAT-ACTAGACGGAATAGAGCACA 1136
|||||||||||| |||| || | |||| || ||| || ||| || ||| | |||||||
Sbjct 1070 AATGTGGGGACCATTCAAAGCACATTGCTTTAAGTC-ATTACTTGATGGAGTTGAGCACA 1128
Query 1137 TAGCAATGGTTAAGGGTGAGATTGGTGACGGTCAAG-ACATTCTTGTGAGGGTTCATTCT 1195
| |||||||| ||||| || || || || || ||| | ||||| ||||| || || |
Sbjct 1129 TTGCAATGGTCAAGGGAGAAATCGGAGATGGG-AAGGATATTCTCGTGAGAGTACACGCG 1187
Query 1196 GAATGTCTCACAGGA-GACATATT 1218
|| ||| |||||| | || |||||
Sbjct 1188 GAGTGTATCACAG-ATGATATATT 1210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97991463840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5