BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496633 Length=672 Score E Sequences producing significant alignments: (Bits) Value AT5G64310.1 | Symbols: AGP1, ATAGP1 | arabinogalactan protein 1... 848 0.0 > AT5G64310.1 | Symbols: AGP1, ATAGP1 | arabinogalactan protein 1 | chr5:25721933-25722646 FORWARD LENGTH=714 Length=714 Score = 848 bits (459), Expect = 0.0 Identities = 629/705 (89%), Gaps = 36/705 (5%) Strand=Plus/Plus Query 1 aacaacaacaacagagcaaaaacactcccaaacc-ctaaaa-aa-ca-aaGAAGCTAAAT 56 ||||||||||||| |||||||||||||||||||| |||| || | |||||||||||| Sbjct 2 AACAACAACAACAAAGCAAAAACACTCCCAAACCAAAAAAAGAAGAAGAAGAAGCTAAAT 61 Query 57 TCGAATCTCTCTC-TTTCTGAAAAATGGCTTTCTCGAAATCTCTAGGGTTTGTTCTTCTC 115 ||||||||||||| ||| ||||| |||||||| || |||||||||| ||||||||||||| Sbjct 62 TCGAATCTCTCTCTTTTTTGAAATATGGCTTTTTCCAAATCTCTAGTGTTTGTTCTTCTC 121 Query 116 GCTGCTCTTTTGATTTCTTCCACGGTGGCTCAGTCTCCAGCTCCAGCTCCATCTAACGTC 175 ||||||||||||||||||||| | |||||||| ||||| ||||||||||||||||||||| Sbjct 122 GCTGCTCTTTTGATTTCTTCCGCAGTGGCTCAATCTCCGGCTCCAGCTCCATCTAACGTC 181 Query 176 GGAGGAAGACGGATCTCACCGGCTCCTTCACCTAAGAAGACGACTTCTCCTGCACCTGCA 235 ||||| |||||||||||||||||||||||||||||||||| |||| ||||||| |||||| Sbjct 182 GGAGGTAGACGGATCTCACCGGCTCCTTCACCTAAGAAGATGACTGCTCCTGCTCCTGCA 241 Query 236 CCTGAAGTTTCTCCTTCTCCTTCTCCGGTAGCCGCATTGACTCCAGAATCCTCTGCTTCA 295 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 242 CCTGAAGTTTCTCCTTCTCCTTCTCCGGCAGCCGCATTGACTCCAGAATCCTCTGCTTCA 301 Query 296 CCTCCATCGCCGCCTCTTGCTGATTCTCCTACCTCTGACTCACCTGCTTTATCTCCGTCC 355 || |||||||||||||| ||||||||||||||| ||||||| || ||||| ||||| || Sbjct 302 CCACCATCGCCGCCTCTAGCTGATTCTCCTACCGCTGACTCCCCGGCTTTGTCTCCATCT 361 Query 356 GCAATCTCCGATTCGCCTACTGAAGCTCCTGGTCCTGCTCAGGGCGCCGCCGTTTCGAAC 415 || ||||||||||| || |||||||||||||||||||||||||||| ||||||||||||| Sbjct 362 GCGATCTCCGATTCTCCGACTGAAGCTCCTGGTCCTGCTCAGGGCGGCGCCGTTTCGAAC 421 Query 416 -AGTTACG-CAGTCTTCGGATCTGTGGCGGTTATGTTAACCGCTGCCGTTTTGGTTATCT 473 | || || |||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 422 AAATT-CGCCAGT-TTCGGATCTGTGGCGGTTATGTTAACTGCTGCCGTTTTGGTTATCT 479 Query 474 AGGTTGTTCCGATGAATGAAGCTTCTTTgattttatttatttattttagatatat-atga 532 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | || Sbjct 480 AGGTTGTTCCGATCAATGAAGCTTCTTTGATTTTATTTATTTATTTTAGATATATTA-GA 538 Query 533 gttttgtgagagagatgatcattccttatttttctcttctttttatt-tcatcttagaat 591 ||||||||||||||||||| |||| ||||||||||||||||| |||| | |||| |||| Sbjct 539 GTTTTGTGAGAGAGATGATGATTCATTATTTTTCTCTTCTTTCTATTATTTTCTTTGAAT 598 Query 592 atttttctttctt----t--t--t--g----t----atctatccgatatttat--at--a 629 ||||||||||||| | | | | | |||||||| |||||||| || | Sbjct 599 ATTTTTCTTTCTTCGGCTGATCCTATGCGCGTTTGTATCTATCCAATATTTATCTATCTA 658 Query 630 t--gatttatcagattttctAAATAACTTTCTATGGAAATATTAA 672 | |||||||||||||||||||||||||||||||||||||||||| Sbjct 659 TATGATTTATCAGATTTTCTAAATAACTTTCTATGGAAATATTAA 703 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32501493109 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5