BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496672
Length=1829
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64600.1 | Symbols: | O-fucosyltransferase family protein |... 3055 0.0
> AT5G64600.1 | Symbols: | O-fucosyltransferase family protein
| chr5:25825167-25828185 FORWARD LENGTH=1834
Length=1834
Score = 3055 bits (1654), Expect = 0.0
Identities = 1778/1837 (97%), Gaps = 11/1837 (1%)
Strand=Plus/Plus
Query 1 CTTCATCGGAGATGGTGAAACACAGAAACTCATCTCGCTCGATAATCTCATATTCTTCTT 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTTCATCGAAGATGGTGAAACACAGAAACTCATCTCGCTCGATAATCTCATATTCTTCTT 60
Query 61 CAATAGCTAGATTCTTCTCTATAAAAGCTATTTCTCTCTACTTGATCTTCGTTTTTGCTT 120
||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 61 CAATAGCAAGATTCTTCTCTAGAAAAGCTATTTCTCTCTACTTGATCTTCGTCTTTGCTT 120
Query 121 TTACCATCTGGGTTCTCGTCTTCAGCTCCAGAAACATACAAACCGATGATGACCACACCA 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 TTACCATCTGGGTTCTCGTCTTCAGCTCCAGAAACATTCAAACCGATGATGACCACACCA 180
Query 181 AACATCAACAAC-A-A-CATCGGGATCTAATCGATTCTGAATCATTTCCGCCACCGTATT 237
|||||||||||| | | |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 AACATCAACAACAACATCATCGGGATCTAATCGATTCAGAATCATTTCCGCCACCGTATT 240
Query 238 TGCCACCTAGGAAGAATTTGCAGAAACCGAATGAAAATACTCAACTTTGGACTCCTCCTT 297
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 TGCCTCCTAGGAAGAATTTGCAGAAACCGTATGAAAATACTCAACTTTGGACTCCTCCTT 300
Query 298 TCAGCTTTGGGTTGCATCCATGTGTCAAACCTACTCCTAAATACAAAGAATTTTCAGAAT 357
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 301 TCAGCTTTGGGTTGCATCCATGTGTCAAACCTACTCCGAAATACAAAGAATTTTCAGAAT 360
Query 358 CAGATCATTATGTAACAGTGAGAAGTAATGGTGGATTAAATCAAATGCGTACTGGTATAG 417
||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 361 CAGATCATTATATAACAGTGAAAAGTAATGGTGGACTAAATCAAATGCGTACTGGTATAG 420
Query 418 CAGATATAGTCGCTGTTGCCCACATCATGAATGCAACTTTAGTCATTCCTGAGTTGGATA 477
|||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 CAGATATAGTGGCTGTTGCGCACATCATGAATGCAACTTTAGTCATTCCTGAGCTGGATA 480
Query 478 AGCGATCGTTTTGGCAAGATTCAAGTGTTTTTTCAGATATTTTTGACGAGGAACACTTCA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 481 AGCGATCGTTTTGGCAAGATTCAAGTGTTTTTTCAGATATTTTTGACGAGGAACAATTCA 540
Query 538 TAAAATCCCTGAGAAGAGATGTGAAGGTTATTAAAAAGCTCCCAAAGGAAGTGGAATCTC 597
| ||||| || |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 541 TTAAATCATTGCGAAGAGATGTCAAGGTTATTAAAAAGCTCCCAAAGGAAGTGGAATCTC 600
Query 598 TACCTAGAGCAAGGAAGCATTTCACTTCTTGGTCTAGTGTTGGATATTATGAAGAAATGA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TACCTAGAGCAAGGAAGCATTTCACTTCTTGGTCTAGTGTTGGATATTATGAAGAAATGA 660
Query 658 CTCACTTGTGGAAGGAGTACAAGGTCATCCATGTCGCGAAATCAGATTCTCGCCTTGCAA 717
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 661 CTCACTTGTGGAAGGAGTACAAGGTCATCCATGTCGCAAAATCAGATTCTCGCCTTGCAA 720
Query 718 ATAATGACCTGCCTATCGACGTTCAAAGACTGAGATGCCGTGTACTGTATCGTGGTCTCC 777
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 721 ATAATGACCTGCCTATCGACGTTCAAAGACTGAGATGTCGTGTACTATATCGTGGTCTCT 780
Query 778 GCTTCTCTCCTGCAATTGAAAGCCTTGGACAGAAGCTGGTTGAGAGACTCAAGTCACGTG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GCTTCTCTCCTGCAATTGAAAGCCTTGGACAGAAGCTGGTTGAGAGACTCAAGTCACGTG 840
Query 838 CTGGGAGATATATTGCATTGCACCTGAGATATGAGAAAGACATGTTGGCTTTCACTGGTT 897
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 841 CTGGGAGATATATTGCATTGCACCTGAGATATGAGAAAGATATGTTGGCTTTCACTGGTT 900
Query 898 GTACCTATGGTCTCACTGATGCTGAATCCGAGGAACTGAGAGTAATGCGGGAAAGTACAA 957
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 901 GCACCTATGGTCTCACTGATGCTGAATCCGAAGAACTGAGAGTAATGCGGGAAAGTACAA 960
Query 958 GCCATTGGAAGATCAAAAGTATAAACTCAACAGAGCAGAGAGAGGAAGGCCTTTGTCCAT 1017
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 961 GCCATTGGAAGATCAAAAGTATAAATTCAACAGAGCAGAGAGAGGAAGGCCTTTGTCCAT 1020
Query 1018 TGACTCCAAAAGAAGTGGGAATATTTTTGAAAGGTCTCGGATATTCTCAGTCAACAGTCA 1077
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1021 TGACTCCAAAAGAAGTGGGAATATTTCTGAAAGGTCTCGGATATTCTCAGTCAACAGTCA 1080
Query 1078 TATATATTGCAGCAGGGGAAATCTATGGAGGTGATGATAGACTCTCTGAGCTTAAGTCGC 1137
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1081 TATATATTGCAGCAGGGGAAATCTATGGGGGTGATGATAGACTCTCTGAGCTTAAGTCGC 1140
Query 1138 GCTTCCCAAATCTAGTCTTTAAGGAAACGCTTGCTGGGAAAGAGGAGTTGAAAGGTTTCA 1197
||||||||||||| || ||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 1141 GCTTCCCAAATCTGGTTTTTAAGGAAACGCTTGCTGGGAACGAAGAGTTAAAAGGTTTCA 1200
Query 1198 CAGGCCATGCGACTAAAACGGCTGCTCTTGATTACATAATTTCTGTTGAGAGTGATGTGT 1257
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 CTGGCCATGCGACTAAAACGGCTGCTCTTGATTACATAATTTCTGTTGAGAGTGATGTGT 1260
Query 1258 TTGTTCCTTCACATTCTGGAAACATGGCAAGAGCAGTTGAAGGTCACCGCAGATTTCTAG 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TTGTTCCTTCACATTCTGGAAACATGGCAAGAGCAGTTGAAGGTCACCGCAGATTTCTAG 1320
Query 1318 GGCATCGCAGGACTATCACTCCCGACAGGAAAGGACTAGTGAAACTCTTCGGTAAGATGG 1377
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1321 GGCATCGCAGGACTATCACTCCCGACAGGAAAGGACTAGTGAAACTCTTCGTTAAGATGG 1380
Query 1378 AGAGAGGACAGTTAAAAGAAGGACCAAAGTTGTCCAATTTTGTGAATCAAATGCATAAAG 1437
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 AGAGAGGACAGCTAAAAGAAGGACCAAAGTTGTCCAATTTTGTGAATCAAATGCATAAAG 1440
Query 1438 ACAGACAAGGTGCACCGAGGAGAAGGAAAGGACCAACGCAGGGGATCAAAGGACGTGCAC 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 ACAGACAAGGTGCACCGAGGAGAAGGAAAGGACCAACGCAGGGGATCAAAGGACGTGCAC 1500
Query 1498 GGTTTAGAACTGAAGAAGCCTTTTATGAGAATCCATATCCAGAGTGTATTTGCAGTTCAA 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 GGTTTAGAACTGAAGAAGCCTTTTATGAGAATCCATATCCAGAGTGTATTTGCAGTTCAA 1560
Query 1558 AGGAGCACAAAGAACCCTAACTAAA-TTTTCCAAACtttttttGTTCTGTATCATTTACA 1616
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1561 AGGAGCACAAAGAACCCTAACTAAAATTTTCCAAACTTTTTTTGTTCTGTATCATT-ACA 1619
Query 1617 TGCTCATTTATAGTCATCTTAATTATAGTTTTTACATATCTCTCGATATCTTT-CTGTTT 1675
| |||||||||||||||||||||||||||||| ||||||| || ||||||||| ||||||
Sbjct 1620 T-CTCATTTATAGTCATCTTAATTATAGTTTTCACATATCCCTTGATATCTTTTCTGTTT 1678
Query 1676 TTGATATCCGGAGATCTCTAGCCGAAGTAGAAAGCTAGAAATTTTTG-CTATTTAGTTAT 1734
||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||
Sbjct 1679 TTGATATCCGGAGATCTCTAGCCGAAGTAGAAAGCCAGAAATTTTTAAC-ATTTAGTTAT 1737
Query 1735 AA--CTTCTCTTTCGGCATTTTTTCAAAGATTCCAAATTTTAACCAAACTATTGTCAATC 1792
|| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1738 AAAACTTCTCTTTCGGCATTTTTTCAAATATTCCAAATTTTAACCAAACTGTTGTCAATC 1797
Query 1793 AGAATGGAACAAGAAAGAAACACCAAAGTTACCACTG 1829
||||||||||||||| |||||||||||||||| ||||
Sbjct 1798 AGAATGGAACAAGAATGAAACACCAAAGTTACTACTG 1834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90511582635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5