BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496680
Length=1474
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64660.1 | Symbols: ATCMPG2, CMPG2 | CYS, MET, PRO, and GLY ... 2230 0.0
> AT5G64660.1 | Symbols: ATCMPG2, CMPG2 | CYS, MET, PRO, and GLY
protein 2 | chr5:25841913-25843452 REVERSE LENGTH=1540
Length=1540
Score = 2230 bits (1207), Expect = 0.0
Identities = 1407/1500 (94%), Gaps = 28/1500 (2%)
Strand=Plus/Plus
Query 1 TTTCTTTTGGAGCAAATCGGAAAACAAAAAATCAACGGCCAAAGCAATGAGGAAGGATGA 60
||| ||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 26 TTTATTTTGGAGCTAATCGGAAAACAAAAAAGCAACGGCCAAAGCAATGAGGAAAGATGA 85
Query 61 TCTCTGCATCACTGTTCCGACGTTCTTCCGATGTCCTATATCACTCGACGTTATGAAATC 120
|||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 86 TCTCTGCATCACTGTTCCTACCTTCTTCCGATGTCCTATATCTCTCGACGTTATGAAATC 145
Query 121 TCCGGTGAGTCTTTGCACCGGTGTTACCTACGATCGAGCTAGTATCCAACGGTGGCTCGA 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 146 TCCGGTGAGTCTTTGCACCGGCGTTACCTACGATCGAGCTAGTATCCAACGGTGGCTTGA 205
Query 181 CGGCGGGAATAATACTTGTCCGGCGACGATGCAGGTTCTTCAGAATAAGGATTTCATACC 240
|||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 206 CGGCGGGAATAACACTTGTCCGGCGACGATGCAGATTCTTCAGAATAAAGATTTCATACC 265
Query 241 TAATCGGACTCTTCAACGTCTTATCGAGATTTGGTCCGACTCTGTTCGTCGTCGAGTTTG 300
||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||
Sbjct 266 GAATCGGACTCTTCAACGTCTTATCGAGATTTGGTCTGATTCTGTTCGTCGTCGAACTTG 325
Query 301 TGTTGAATCGGCGGAATTAGCTGCTCCGACGAGAGACGAGATCTCCGATGCGATTGATAG 360
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 326 TGTTGAATCGGCGGAATTAGCTGCTCCGACGAGAGACGAGATCGCCGATGCGATCGATAG 385
Query 361 AGTGAAGATCGAAAAAGAAGAAAGAGATGATCGCGAGGTTTTGTCGAAGATTGTTCGATT 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 AGTGAAGATCGAGAAAGAAGAAAGAGATGATCGCGAGGTTTTGTCGAAGATTGTTCGATT 445
Query 421 CGGAAGAGAATCTGATGATAACAGAGGATTTCTCGCCGGAAAAGATGATTTCGTGAGACT 480
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 446 CGGGAGAGAATCTGATGATAACAGAGGATTTCTCGCCGGAAAAGATGATTTCGTGAAACT 505
Query 481 TCTCGTGGATCTGATTAATCAGGTAGATTTCAAAACAACCTCCGCCGCGAAATCTCTGGT 540
|||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||
Sbjct 506 TCTCGTGGATCTGATTAATCAGGTGGATTTCGAAACCACCTCCGCCGCGAAATCTCTGGT 565
Query 541 TGTTCAAGAAGCGGTGAAGATTCTGAGTATGATTCGAACCAAAATCTCAGATCGGAGACG 600
||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||
Sbjct 566 TGTTCAAGAAGCGGTGAAGATTCTGAGTACGATTCGAAGCAAAGTCTCAGATCGGAGACG 625
Query 601 GTTTTCGAATCTGATTTTAACCAACGGTCGAGATCGGTTAACCGTCATCGTCTACTTGTT 660
|||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct 626 GTTTTCGAATCTGATTTTAACCAACGGTCGAGATCGGTTATCGGTGATCGTCTACTTGTT 685
Query 661 TAAAACCGGGAATGACGAATTGAAAATCGATTGCGCCGGTTTACTTGAGTTCATCGCCGT 720
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 686 TAAAACCGGGAATGTCGAATTGAAAATTGATTGCGCCGGTTTACTTGAGTTCATCGCCGT 745
Query 721 AGACGCTGAGTCAAAGCTGTTAATCGCCGATAGAGATGG-TGTAATCACGGAGCTAATGA 779
|||||||| |||||||||||||||||||| |||||||| | ||||||||||||||||||
Sbjct 746 CGACGCTGAATCAAAGCTGTTAATCGCCGAGAGAGATGGAT-TAATCACGGAGCTAATGA 804
Query 780 AATCGATTAGCAAAGATTCCGATTTAAGCTTAATCGAATCGGGTTTATCGTGTTTGATCG 839
|||||||||| |||||||| |||||||| |||||||||||| |||||||||| |||||||
Sbjct 805 AATCGATTAGTAAAGATTCTGATTTAAGTTTAATCGAATCGAGTTTATCGTGCTTGATCG 864
Query 840 CGATTAGCTCACCGAAACGTGTGAAACTCAATCTAATCCGGGAGAAACTCATCGGAGATG 899
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 865 CGATTAGCTCACCGAAACGTGTGAAACTCAATCTCCTCCGAGAGAAACTCATCGGAGATG 924
Query 900 TTACCAAATTGTTATCAGATTCAACGT--T-GTCGAGCGTTTCGGTGACTGAGAAATGCT 956
|||| ||| |||||||||||||||||| | || ||||||||||||||| ||||||||||
Sbjct 925 TTACGAAACTGTTATCAGATTCAACGTCGTCGTTGAGCGTTTCGGTGACGGAGAAATGCT 984
Query 957 TGAAGCTTCTCGAGATTTTAGCATCCACTAAGGAAGGGAGATCGGAAATCTGCGGCGGAG 1016
|||||||||| |||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct 985 TGAAGCTTCTGGAGATTTTAGCATCTACAAAGGAAGGGAGATCGGAAATTTGCGGCGGAG 1044
Query 1017 ATGGCGAGTGTTTGAAGACGGTGGTTAAGAAGCTGATGAAAGTTTCGACGGCGGCGACGG 1076
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1045 ATGGCGAGTGTTTGAAGACGGTGGTTAAGAAGCTGATGAAAGTGTCAACGGCGGCGACGG 1104
Query 1077 AGCACGCCGTGACGGTGCTATGGAGTGTTTCTTATCTTTTCAAAGAAGATAAAGCTTTGG 1136
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1105 AGCACGCCGTGACGGTGCTGTGGAGTGTTTCTTATCTATTCAAAGAAGATAAAGCTTTGG 1164
Query 1137 AAGCTGTTACGAGTGCTAACGGCGTTACGAAAATTCTGTTACTGTTACAGAGCAATTGCT 1196
|||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1165 AAGCTGTTACAAGTGTTAACGGAGTTACGAAAATTCTGTTACTGTTACAGAGCAATTGCT 1224
Query 1197 CTCCCGCCGTTAGGCGTATGTTAACGGATCTTCTTAAGGTCTTCAAGGTGAATTCAAGAT 1256
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1225 CTCCCGCCGTTAGACGTATGTTAACGGATCTTCTTAAGGTCTTCAAGGTGAATTCAAGAT 1284
Query 1257 CTTGCCTTTCGGCTTACGACACCAAAACGACACATATCATGCCGTTTTAA-TCAATTCtt 1315
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1285 CTTGCCTTTCGGCTTACGACACCAAAACGACACATATCATGCCGTTTTAAATCAATTCTT 1344
Query 1316 tttttACTTACTAGGGTTTCGTTCTTAGGATTTGTTTCTTGGGAAAGAGGTAA-AA---T 1371
|| |||||||||||||| |||| ||||||||||||||||||||||||||||| || |
Sbjct 1345 TTACTACTTACTAGGGTT-CGTTTTTAGGATTTGTTTCTTGGGAAAGAGGTAAGAACAAT 1403
Query 1372 -G-AAA--T----T----TT---GAATAGTGAATATAAACTAAAAA-GA-GATTCAATTC 1414
| ||| | | || ||||||||||||||||||||||| || ||||||||||
Sbjct 1404 TGTAAAACTAAAATGAAATTTTTGAATAGTGAATATAAACTAAAAAAGAAGATTCAATTC 1463
Query 1415 ATTGCTCATTGAATGTGTAGTCTATTATTCTCTTATTACTGTAAAGTAAAATCAAATAAT 1474
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1464 ATTGCTCATTGAATGTGTAGTCTATTATTCTCTTATTAATGTAAAGTAAAATCAATTAAT 1523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72690389160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5