BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496693 Length=590 Score E Sequences producing significant alignments: (Bits) Value AT5G64770.1 | Symbols: RGF9 | Encodes a root meristem growth fa... 798 0.0 > AT5G64770.1 | Symbols: RGF9 | Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9). | chr5:25897367-25898124 REVERSE LENGTH=593 Length=593 Score = 798 bits (432), Expect = 0.0 Identities = 542/593 (91%), Gaps = 16/593 (3%) Strand=Plus/Plus Query 1 TATATAACCAAAGaaaaaaaaaTCTCTTCCAAAAATGGCAATTAGGGTTTCCTACAAGTC 60 ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 6 TATATAACCAAAGAAAAAAAACTCTCTTCCAAAAATGGCAATTAGGGTTTCCCACAAGTC 65 Query 61 TTTCCTCGCCGCAGTTCTTCTCATACTCTTCATTTGTTCTCCTACTCAAGCACGAAGCTT 120 |||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 66 TTTCCTCGTCGCACTTCTTCTCATACTCTTCATTTCCTCTCCTACTCAAGCACGAAGCTT 125 Query 121 ACGAGAAATCGTGAGGAATAGAACGCTATTGGTTGTGGAGAAGGGTCAAGCGAGTCGGAA 180 ||||||| | || |||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 126 ACGAGAAGTAGTAAGGAATAGAACGCTATTGGTTGTGGAGAAGAGTCAAGAGAGTCGGAA 185 Query 181 AATAAGGCACGAAGGTGGAGGAAGTGATGTTGATGGATTGGTGGATATGGATTATAATTC 240 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 186 AATAAGGCACGAAGGTGGAGGAAGTGATGTTGATGGATTGATGGATATGGATTATAATTC 245 Query 241 TGCGAACAAGAAAAGACCAATACACAATCGCTAATAAACACACATGAGAGCTTATCGAAT 300 |||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||| Sbjct 246 TGCGAACAAGAAAAGACCGATACACAATCGCTAATAAACACACATGA-A-CTTATCGAAT 303 Query 301 TCTTGTGAGATATCCTGAGATCCAAAGATATCCCGAGATTTTATCTTTTACGAAACATAA 360 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 304 TCTTGTGAGATATCCTGAGATCCAAAGATATCCCGAGATTTTATCTTTTACTAAACATAA 363 Query 361 ATTATAAGAAGTGAGAATGTATTATATATTTaaaaaaaaaaaaaaaaGTGAGAATGTAAA 420 ||||||||||||||||||||||| ||||| || |||| || ||||||||||||| Sbjct 364 ATTATAAGAAGTGAGAATGTATTTTATAT--AAGAAAAGAA------GTGAGAATGTAAA 415 Query 421 ATA--AT-ATTTATATGAACATATAAATATAGACGACTTTGTATGCATATGTGTACAGTC 477 || || ||||||| ||||||||||||||| |||||||||||||||| ||||||||| Sbjct 416 CTATTATTATTTATAGGAACATATAAATATAAACGACTTTGTATGCAT--GTGTACAGTA 473 Query 478 TTATCTCGAGAAAAAACCGTTTTATATAATAATCATAGCTTGTGTGTGTTTTATGTAGAG 537 |||||||||| ||||| ||| |||| ||||||||||||||||||||| | | || | Sbjct 474 TTATCTCGAGGGAAAACAGTTCTATACAATAATCATAGCTTGTGTGTGCTAGCTTTAT-G 532 Query 538 TATGGATTGCATCATGGTTTTCTGTTTGTGAAATAAAGGTCAATAATATATTA 590 ||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 533 TATGGATTGCATCATGGTTTTCTGTTTGTGAAATAAAACTCTATAATATATTA 585 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28382293055 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5