BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496711
Length=1301
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64920.1 | Symbols: CIP8 | COP1-interacting protein 8 | chr5... 1786 0.0
> AT5G64920.1 | Symbols: CIP8 | COP1-interacting protein 8 | chr5:25943888-25945442
REVERSE LENGTH=1555
Length=1555
Score = 1786 bits (967), Expect = 0.0
Identities = 1234/1352 (91%), Gaps = 61/1352 (5%)
Strand=Plus/Plus
Query 1 TCCTCTTAAACGGCTTATCGGATCCGAATACGGACCCGAGAGCCCGTTAACCCGACGA-T 59
||||||||| ||||||||||||||||||| ||||||||| |||| | |||||||||| |
Sbjct 32 TCCTCTTAATCGGCTTATCGGATCCGAATCCGGACCCGAAAGCCTGAAAACCCGACGATT 91
Query 60 ATATAGCACGATGTCCGATGCTCCGTCGTCTTCTCCGGATGCCACGGCATCGCACTGGTG 119
| || |||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 92 A-ATTGCACGATGTCCGATGCTCCGTCGTCTTCCCCGGATGCCACGGCGTCGCACTGGTG 150
Query 120 CTATCACTGCAACAAACGCGTCGTCGTTGAAACCTTAGATGACTTGGTCGTGTGTTGCGA 179
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 151 CTATCACTGCAACAAACGCGTCGTCGTTGAAACCTTAGATGACTTTGTCGTGTGCTGCGA 210
Query 180 ATGTAACAAAGGTTTCGTCGAGTCAATTCAGCCGATTCCGGCCGCTTATTCATCGCCGGC 239
|||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||
Sbjct 211 ATGTAACAAAGGTTTCGTCGAGTCAATTCAACCGACTCCCGCCGCTTATTCATCGCCGGC 270
Query 240 GCCACCGCAGCCGCTTTCCCCAGATCTGACTATAGAAGACTCCAGTATTGGCTCGCATTT 299
|||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 271 GCCACCGCAGCCACTTTCCCCAGATCTGAATGTAGAAGACTCCAGTATTGGCTCGCATTT 330
Query 300 CCTCCAGATGCTCCGCTTGTTAGCCCACGCGCCTTCTCAGCGTTCACCACCACGACACCT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 CCTCCAGATGCTCCGCTTGTTAGCCCACGCGCCTTCTCAGCGTTCACCACCACGACACCT 390
Query 360 TGATGTGTTATCTTACGAAGATGATTTCTTCAGATTGGAGCTCAATAGTAGAAACGAAAT 419
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 391 TGATGTTTTATCTTACGAAGATGATTTCTTCAGGTTGGAGCTCAATAGTAGAAACGAAAT 450
Query 420 CGACga--a-gttga--a-gatgaagaagatggagatgaagaagaagaggaggatgagga 473
|||||| | | || | |||||||| ||||||||||||||||||||||| ||||||
Sbjct 451 CGACGATGACGAAGACGAAGATGAAGATGATGGAGATGAAGAAGAAGAGGA---TGAGGA 507
Query 474 agagaatttaaccgtcaacgacgaagaagaggaagaagaTGATCTGAGGAGGAGAAATCG 533
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 508 AGAGAATTTAACCGTCAACGACGAAGAAGACGAAGAAGATGATCTGAGGAGGAGAAATCG 567
Query 534 ATTTCCTCTCACGACGACGCGGTCGAGAACGGGAAGAAACAGAATTCTCGATTGGGCTGA 593
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 568 TTTTCCTCTCACGACGACGCAGTCGAGAACCGGAAGAAACAGAATTCTCGATTGGGCTGA 627
Query 594 GATTTTGATGGGAATCGAAGACAATTCGATTGAGTTCCGTATGGAATCAGAACGGTACAC 653
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 628 GATTTTGATGGGAATCGAAGACAATTCGATTGAGTTCCGTATGGAATCAGATCGATACGC 687
Query 654 AGGAAATCCGGCTGATTACATCGACGATGCAGCCGGATACGAAGCTTTGCTACAGAATTT 713
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 688 AGGAAATCCGGCTGATTACATAGACGATGCAGCCGGATACGAAGCTTTGCTACAGAATTT 747
Query 714 AGCAGAAGGAGACGGTGGTGGTGGTGGA--A-GGAGAGGCGCACCACCGGCTGCAAAATC 770
|||||||||||| ||||||||||| ||| | |||||||||||||||||||||| |||||
Sbjct 748 AGCAGAAGGAGATGGTGGTGGTGGCGGAGGAAGGAGAGGCGCACCACCGGCTGCGAAATC 807
Query 771 GGCCATAGAAGCGTTGGAGACTTTTC-AGGTTACTTCTTCGGAGGGAGAGACGGTTATGG 829
||| ||||| || ||||||||||| | |||||| ||||||||||||||||| ||||||||
Sbjct 808 GGCAATAGAGGCATTGGAGACTTT-CGAGGTTAGTTCTTCGGAGGGAGAGATGGTTATGG 866
Query 830 TGTGTGCTGTGTGTAAAGATGGAATGGTGATGGGAGAAACCGGTAAAAAGTTACCGTGTG 889
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 867 TTTGTGCTGTGTGTAAAGATGGAATGGTGATGGGAGAAACTGGTAAGAAGTTACCGTGTG 926
Query 890 GACATTGTTACCACGGAGATTGTATTGTGCCATGGTTAGGAACAAGGAACTCTTGTCCTG 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 GACATTGTTACCACGGAGATTGTATTGTGCCATGGTTAGGAACAAGGAACTCTTGTCCTG 986
Query 950 TCTGTAGATTCCAGCTTCAGACTGATGATGCTGAGTACGAGGAAGAGAGGAAGAAAAGAA 1009
||||||||||||||||| |||||||||||||||| || |||||||||||||| |||||||
Sbjct 987 TCTGTAGATTCCAGCTTGAGACTGATGATGCTGAATATGAGGAAGAGAGGAAAAAAAGAA 1046
Query 1010 CTTCTACCATGTCAGATTCTGCTACTGCTTCTTCTTCGGCTTC---T-C--GTCACT-AA 1062
|||||||| |||||||||||||| ||||||||||||| |||| | | || ||| ||
Sbjct 1047 CTTCTACCGTGTCAGATTCTGCTGCTGCTTCTTCTTCTTCTTCAACTTCTCGTTACTGAA 1106
Query 1063 ----A-----T-------TT-GTTGTTCCTTT-GTTGTTACTCTTTCTCTTTAGATTAAA 1104
| | || |||||| |||| ||||||||||||||||||||||||||
Sbjct 1107 GTGGAGGAAATGCCCCCATTTGTTGTTACTTTTGTTGTTACTCTTTCTCTTTAGATTAAT 1166
Query 1105 ACTTTGCTTAGTCTCTCAACACTGTTTGGTTGGTTGCAT----CA--A--GTA---AGAA 1153
|||||||||||||||||||||| ||||||||||||||| || | | | ||||
Sbjct 1167 -CTTTGCTTAGTCTCTCAACACTATTTGGTTGGTTGCATGTTGCATCAAAGAAGCGAGAA 1225
Query 1154 AACAGAGAACaaaaaaaaa---TCCGGCTCCAAAA-GACTATTGTTATTTGTAAGTGTGT 1209
||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||
Sbjct 1226 AACAGAGAACAAAAAAAAAAAATCCGGCTCCAAAAAGACAATTGTTATTTGTAAGTGTGT 1285
Query 1210 TGTATCTTTGGCCTAAACAATTCCATAGTGGTTTTCTTTTGATTCTCAGTTGTTCATAAT 1269
||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||
Sbjct 1286 TGTATCTTTGGCCTAAACAATCCCATAGTGGTTT-CTTT-GATTCTCAGTTGTTCATAAA 1343
Query 1270 GTTTGCCGAATCACAAAAAGGTTCCTGGGTTT 1301
|||||||||| ||||||||||||||||||||
Sbjct 1344 GTTTGCCGAA--ACAAAAAGGTTCCTGGGTTT 1373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64005694875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5