BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496860
Length=2022
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67385.1 | Symbols: | Phototropic-responsive NPH3 family pr... 3219 0.0
AT3G49970.1 | Symbols: | Phototropic-responsive NPH3 family pr... 207 3e-52
> AT5G67385.1 | Symbols: | Phototropic-responsive NPH3 family
protein | chr5:26884664-26887204 FORWARD LENGTH=2026
Length=2026
Score = 3219 bits (1743), Expect = 0.0
Identities = 1933/2026 (95%), Gaps = 8/2026 (0%)
Strand=Plus/Plus
Query 1 CGGCACGTCTTCTTCATGAGAAGGACTTGAAATAGTGTTCCATGGTGAATTTCTTGAGTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CGGCACGTCTTCTTCATGAGAAGGACTTGAAATAGTGTTCCATGGTGAATTTCTTGAGTG 60
Query 61 AAAAGAAACTGCGAGCTAAGTGTTCGTAATATGTCAGCAAAGAAGAAAGATCTTTTGTCT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAAGAAACTGCGAGCTAAGTGTTCGTAATATGTCAGCAAAGAAGAAAGATCTTTTGTCC 120
Query 121 TCAGCCATGAAGAGAACCAGTGAATGGATCTCTTCTCAAGAAGTCTCTAGTGATGTTACC 180
||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 121 TCAGCTATGAAAAGAACCAGTGAATGGATTTCTTCTCAAGAAGTATCTAGTGATGTCACC 180
Query 181 GTTCATGTAGGAGAAGCTTCTTTTTCACTGCACAAGTTTCCACTCTTGTCAAAATGTGGG 240
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 181 GTTCATGTAGGAGAAGCTTCGTTTTCACTGCACAAGTTTCCACTCATGTCAAAATGTGGG 240
Query 241 TTTATCAAGAAACTTGTGTCGGAATCAAACAAAGATTCAGATTCCACCGTTATCAATATA 300
|||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||
Sbjct 241 TTTATCAAGAAACTTGTGTCGGAATCAAGCAAAGATTCAGATTCCACTGTTATCAAGATA 300
Query 301 ACAGATATCCCAGGAGGCTCTGAAGCATTCGAGCTAGCTGCTAAGTTCTGCTACGGAATT 360
||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 301 CCAGATATTCCAGGAGGCTCTGAAGCATTTGAGCTAGCGGCTAAGTTCTGCTACGGCATT 360
Query 361 AACTTTGATATGAGTACAGAGAACATTGCCATGCTGCGATGTGCAGCAGAGTATCTAGAG 420
|||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 361 AACTTTGATATGAGCACAGAGAACATTGCCATGTTGCGATGTGCAGCGGAGTATCTAGAG 420
Query 421 ATGACAGAGGAACACTCTGTGGAAAATCTCGTTGTAAGAGCCGAATCTTACTTGGATGAA 480
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 421 ATGACAGAGGAACACTCTGTGGAAAATCTCGTTGTAAGAGCCGAAGCTTACTTGAATGAA 480
Query 481 GTAGCTCTCAAGAGCTTATCGAGTTCGATCACTGTCTTGCACAAATCAGAGGAA-TTGTT 539
|||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||
Sbjct 481 GTAGCTCTCAAGAGCTTATCGAGTTCGATCACAGTCTTGCACAAATCAGAG-AAGTTGTT 539
Query 540 GCCCATTGCTGAAAGAGTAAAACTTGTGAGCCGTTGCATCGATGCAATTGCTTATATGAC 599
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 GCCCATTGCTGAAAGAGTCAAACTTGTAAGCCGTTGCATCGATGCAATTGCTTATATGAC 599
Query 600 TTGTCAGGAGAGCCAATTTTGCAGTCCTTCCTCTAGTAATAGTGGTAACAATGAGGTTGT 659
|||||| |||||||| |||||||||||||| || |||||||| |||||||||||||||||
Sbjct 600 TTGTCAAGAGAGCCATTTTTGCAGTCCTTCTTCAAGTAATAGCGGTAACAATGAGGTTGT 659
Query 660 GGTTCAGCAGCAGAGCAAGCAGCCTGTGGTTGATTGGTGGGCTGAAGACTTAACGGTCCT 719
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 660 GGTTCAGCAGCAGAGCAAGCAGCCTGTTGTTGATTGGTGGGCTGAAGACTTAACGGTTCT 719
Query 720 TAGGATTGATTTGTTTCAACGTGTCCTGATCGCGATGATGGCTAGGGGGTTTAAGCAGTA 779
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 720 TAGGATTGATTCGTTTCAACGTGTCCTGATCGCGATGATGGCTAGAGGGTTTAAGCAGTA 779
Query 780 TGGACTTGGTCCAGTGCTTATGCTCTATGCTCAGAAATCTCTTCGAGGGTTGGAAATTTT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGGACTTGGTCCAGTGCTTATGCTCTATGCTCAGAAATCTCTTCGAGGGTTGGAAATTTT 839
Query 840 CGGGAAAGGTATGAAGAAGATTGAACCAAAACAAGAACACGAGAAAAGAGTGATTCTTGA 899
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 840 CGGGAAAGGAATGAAGAAGATTGAGCCAAAACAAGAACACGAGAAAAGAGTGATTCTTGA 899
Query 900 AACAATCGTAAGCCTTCTTCCTCGAGAGAAAAATGCAATGTCGGTTAGCTTTCTCTCTAT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AACAATCGTAAGCCTTCTTCCTCGAGAGAAAAATGCAATGTCGGTTAGCTTTCTCTCTAT 959
Query 960 GCTTCTACGTGCAGCAATATTCCTTGAAACAACGGTTGCTTGTAGACTTGACTTGGAGAA 1019
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 960 GCTTCTACGCGCAGCAATATTCCTCGAAACAACGGTTGCTTGTAGACTTGACTTGGAAAA 1019
Query 1020 GAGAATGGGATTACAATTAGGACAAGCCGTGCTCGACGATCTCTTGATTCCTTCTTATTC 1079
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1020 CAGAATGGGATTACAATTAGGACAAGCCGTGCTCGATGATCTCTTGATTCCTTCTTATTC 1079
Query 1080 ATTCACTGGAGATCACTCTTTGTTTGATACTGACACTGTTCAACGCATTCTCATGAATTA 1139
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ATTCACTGGAGATCACTCCATGTTTGATACTGACACTGTTCAACGCATTCTCATGAATTA 1139
Query 1140 TCTTGAGTTTGAAGTTGAAGGAGTTCGCTTAAGCAATAACGGTGTTGATCTTGCTGGTGA 1199
||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1140 TCTCGAGTTTGAAGTCGAAGGAGTTCGCTTAAGCAATAATGGTGTTGATCTTGCTGGTGA 1199
Query 1200 TATGGAACGTGTTGGTAAACTGTTGGAGAATTATATGGCTGAAATTGCATCTGATAGAAA 1259
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1200 TATGGAACGTGTTGGTAAACTTTTGGAGAATTATATGGCTGAAATTGCTTCTGATAGAAA 1259
Query 1260 TGTGAGCTTGCAGAAATTCATCAGTTTAGCTGAACTTATTCCTGAACAGTCTAGGGTTAC 1319
|||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||
Sbjct 1260 TGTGAGCTTGCAGAAATTCATCGGTTTAGCTGAACTTATCCCCGAACAGTCTAGGGTTAC 1319
Query 1320 TGAAGATGGGATGTATCGAGCCGTCGACATCTACCTTAAGGCGCATCCAAATATGACTGA 1379
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1320 TGAAGATGGTATGTATCGAGCCGTCGACATCTACCTTAAGGCGCATCCCAATATGAGTGA 1379
Query 1380 TATTGAGAGGAAGAAAGTATGCAGCTTAATGGATTGCCAAAAACTATCACGAGAAGCTTG 1439
| | |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1380 TGTAGAGAGGAAGAAAGTGTGCAGCTTAATGGACTGCCAAAAACTATCACGAGAAGCCTG 1439
Query 1440 CGCTCATGCAGCTCAGAACGATCGTCTTCCTGTTCAGACCATTGTTCAAGTCCTTTACTA 1499
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 CGCTCATGCAGCTCAGAATGATCGTCTTCCTGTTCAGACCATTGTTCAAGTCCTTTACTA 1499
Query 1500 CGAGCAACAACGTCTACGAGGAGAAGTCACTAACGATTCAGATTCTCCAGCCCCACCACC 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 CGAGCAACAACGTCTACGAGGAGAAGTCACTAACGATTCAGATTCTCCAGCCCCACCACC 1559
Query 1560 ACCTCCACCAGCAGCTGTTCTTCCTCCCAAACTCAGCTCCTACACTGACGAACTCTCCAA 1619
||| | ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1560 ACCACAACCAGCAGCTGTTCTTCCTCCCAAACTTAGCTCCTACACCGACGAACTCTCCAA 1619
Query 1620 GCTGAAACGCGAAAACCAGGACTTGAAGCTCGAACTTCTCAAAATGAAAATGAAGCTTAA 1679
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1620 GCTTAAACGCGAAAATCAGGACTTGAAGCTCGAACTTCTCAAAATGAAAATGAAGCTAAA 1679
Query 1680 AGAGTTTGAGAAAGAGAGTGAGAAGAAATCGTCATCACCAACCATCAGCACCAATCCAAG 1739
|||||||||||||||||||||||||||| | |||||| ||||||||||||| ||||||||
Sbjct 1680 AGAGTTTGAGAAAGAGAGTGAGAAGAAAACATCATCATCAACCATCAGCACGAATCCAAG 1739
Query 1740 TTCACCAATCTCAACTGCTTCCATGGGTAAGCCTCCATTGCCAAGAAAGTCATTCATAAA 1799
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1740 TTCACCAATCTCAACTGCTTCCACGGGTAAGCCTCCATTGCCAAGAAAGTCATTCATAAA 1799
Query 1800 CTCTGTTTCAAAGAAACTCGGAAAGCTAAACCCTTTTGGCATCACACCATACAACGGTAG 1859
||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1800 CTCTGTTTCCAAGAAACTCGGTAAGCTAAACCCTTTTAGCATCACACCATACAACGGTAG 1859
Query 1860 AGGCAGAACGAAACCACCAAAAGATCGGAGACACTCTATTTCTTGAAAACCATAT-T-T- 1916
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| | |
Sbjct 1860 AGGCAGAACCAAACCACCAAAAGATCGGAGACACTCTATTTCTTGAATACCATATCTATA 1919
Query 1917 TACACACATATAAGTATGTTTAATTTTTGCTGGAACTTTTAAGTTCTGATTCAAGGAttt 1976
|||||| |||||| | ||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 1920 TACACATATATAA--A-GTTGAATTTTTGTTGGAACTTTTAAGTTCTGATTCAAGGGGTT 1976
Query 1977 ttttttCTACTTATCAACATTTGATATTTTTGTGTGTTTATGATGT 2022
|| || || ||||||||||||||||||||| |||||||||||||||
Sbjct 1977 TTCTTCCTGCTTATCAACATTTGATATTTTGGTGTGTTTATGATGT 2022
> AT3G49970.1 | Symbols: | Phototropic-responsive NPH3 family
protein | chr3:18527216-18529066 REVERSE LENGTH=1581
Length=1581
Score = 207 bits (112), Expect = 3e-52
Identities = 342/447 (77%), Gaps = 39/447 (9%)
Strand=Plus/Plus
Query 185 ATGTAGGAGAAGC-TTC-TTTTTCACTGCACAAGTTTCCAC-TCTTGTCAAAATGTGGGT 241
|||| |||||| | ||| ||||| ||| ||||||||||||| | || |||||||||||||
Sbjct 1 ATGTTGGAGAAACTTTCGTTTTT-ACTCCACAAGTTTCCACTTGTT-TCAAAATGTGGGT 58
Query 242 TTATCAAGAAACTTG-TGTCGGAATCAAACAAAGATTCAGATTCCACCGTTATCA-ATAT 299
|||| |||||||||| | || ||||||| | | | | ||||||| | |||||| | ||
Sbjct 59 TTATAAAGAAACTTGCT-TCTGAATCAAGC--A-A-T--GATTCCAACATTATCAGA-AT 110
Query 300 AACAGATATCCCAGGAGGCT-CTGAAGCATTCGAGCTAGCTGC-T-AAGTTCTGCTACGG 356
||||| | || ||||| | | |||| ||| ||||||| | | | || ||||||||| |
Sbjct 111 CCCAGATTTTCCTGGAGG-TGCAGAAGGATTTGAGCTAG-T-CATCAAATTCTGCTAC-G 166
Query 357 A-ATTAA-CTTTGATATGAGTACAGAGAACATTGCCATGCTGCGATGTGCAGCAGAGTAT 414
| | ||| ||| || || | |||||||||||||| ||||| | ||||||||||||||||
Sbjct 167 ACA-TAAGCTTCGAGATAAACACAGAGAACATTGCGATGCTACTATGTGCAGCAGAGTAT 225
Query 415 CTAGAGATGACAGAGGAACACTCTGTGGAAAATCTCGTTGTA-AGAGCCGAA-TCTTACT 472
|||||||||||||||||||||||||| ||||| || || | | | | || | |||||
Sbjct 226 CTAGAGATGACAGAGGAACACTCTGTTGAAAACCTAGTGG-AGACAATAGAGGT-TTACT 283
Query 473 TGGATGAAGTAGCTC-TCAAGAGCTTATCGAGTTC-GATCACTGT-CTTGCACAAATCAG 529
| | ||||| | || ||||||| ||||| | || | | | || || ||| |||||
Sbjct 284 TAAACGAAGT-GATCCTCAAGAGTTTATCAAAATCAGTTAAA-GTTCT-GCAAAAATCTC 340
Query 530 AGGAATTGTTGCCCATTGCTGAAAGAGTAAAACTTGTG-AGCCGTTGCATCGATGCAATT 588
| || |||||||| || || || ||||| | ||| ||| | ||| || |||||| ||||
Sbjct 341 AAGATTTGTTGCCTATAGCCGAGAGAGTGAGACTCGTGGA-CCGGTGTATCGATTCAATC 399
Query 589 GCTTATATGACT-TGTCAGGAGAGCCA 614
|||||| | | || |||||||||||
Sbjct 400 GCTTATGCAA-TATGCCAGGAGAGCCA 425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100200287820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5