BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496862 Length=1250 Score E Sequences producing significant alignments: (Bits) Value AT5G67380.1 | Symbols: CKA1, ATCKA1 | casein kinase alpha 1 | c... 1434 0.0 > AT5G67380.1 | Symbols: CKA1, ATCKA1 | casein kinase alpha 1 | chr5:26880966-26883430 REVERSE LENGTH=1467 Length=1467 Score = 1434 bits (776), Expect = 0.0 Identities = 892/945 (94%), Gaps = 19/945 (2%) Strand=Plus/Plus Query 324 GAAGATAAGAAGAGAGATTAAAATACTTCAGAACCTTTGCGGTGGGCCAAATATTGTCAA 383 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 488 GAAGATAAGAAGAGAGATTAAAATACTTCAGAACCTATGCGGTGGGCCAAATATTGTCAA 547 Query 384 GCTGCTTGATGTTGTTAGAGATCAACATTCGAAAACTCCAAGCTTGATTTTTGAATATGT 443 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 548 GCTGCTTGATGTTGTTAGAGATCAACATTCGAAAACTCCAAGCTTGATATTTGAATATGT 607 Query 444 TAACAGCACAGACTTTAAAGTTCTGTATCCTACGTTGACTGATTACGACATTCGTTACTA 503 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 608 TAACAGCACAGACTTTAAAGTTTTGTATCCTACGTTGACTGATTACGACATTCGTTACTA 667 Query 504 TATCTATGAGCTTTTGAAGGCACTGGACTTCTGCCATTCACAAGGAATAATGCACAGAGA 563 ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 668 CATCTATGAGCTGTTGAAGGCACTAGACTTCTGCCATTCACAAGGAATAATGCACAGAGA 727 Query 564 CGTCAAGCCTCACAATGTTATGATTGACCATGAGCTGCGTAAGCTTCGTCTTATAGATTG 623 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 728 CGTCAAGCCTCATAATGTTATGATTGACCATGAGCTGCGTAAGCTTCGTCTTATAGATTG 787 Query 624 GGGTCTTGCTGAGTTTTACCACCCTGGAAAAGAGTATAATGTCCGTGTTGCTTCTAGATA 683 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 788 GGGTCTTGCTGAGTTTTACCACCCTGGAAAAGAGTATAATGTCCGTGTTGCCTCAAGATA 847 Query 684 CTTT-AAGGGACCTGAACTTCTCGTGGACTTGCAAGACTATGACTATTCATTGGATATGT 742 ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 848 -TTTCAAGGGACCTGAACTTCTTGTGGACTTGCAAGACTATGACTATTCATTGGATATGT 906 Query 743 GGAGTCTTGGTTGTATGTTTGCTGGGATGATATTCCGTAAGGAACCTTTCTTCTACGGCC 802 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 907 GGAGTCTTGGCTGTATGTTTGCAGGGATGATATTCCGTAAGGAACCTTTCTTCTACGGCC 966 Query 803 ATGACAATCAGGATCAGCTAGTGAAAATTGCCAAGGTGATTGGGACTGACGAATTGAATG 862 ||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct 967 ATGACAACCAGGATCAGCTAGTGAAAATCGCCAAGGTGCTTGGGACTGACGAATTGAATG 1026 Query 863 CTTATCTGAACAAGTACCAGTTAGAACTTGACCCACAACTCGAAGCACTTGTTGGGCGGC 922 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 1027 CTTATCTGAACAAGTACCAGTTAGAACTTGATCCACAACTGGAAGCACTTGTTGGGCGGC 1086 Query 923 ATAGCAGGAAACCTTGGTCCAAATTCATCAACGCAGACAATCAGCATTTGGTGTCACCAG 982 |||||||||||||||||||||||||||||||||||||||||||||| || || ||||| | Sbjct 1087 ATAGCAGGAAACCTTGGTCCAAATTCATCAACGCAGACAATCAGCACTTAGTTTCACCCG 1146 Query 983 AGGCGATTGATTTCCTCGACAAGCTACTTCGGTATGATCATCAAGATAGATTAACTGCAA 1042 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1147 AGGCGATTGATTTCCTCGACAAGCTACTTCGGTATGATCATCAAGACAGATTAACTGCAA 1206 Query 1043 AAGAAGCCATGGCACACGCTTACTTCGCCCAAGTTAGGGCAGCAGAAACCAGCAGAATGA 1102 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1207 AAGAAGCCATGGCGCACGCTTACTTCGCCCAAGTTAGGGCAGCAGAAACCAGCAGAATGA 1266 Query 1103 GAAGTCAATGAA-CACAGAGATCTGTCT-T-TG-AA-CTTTCTGGTGATGATGATGGTAT 1157 |||||||||||| ||||||||||| ||| | | || ||| ||| |||||||||||||| Sbjct 1267 GAAGTCAATGAAACACAGAGATCTCTCTGTCTATAAACTTACTGATGATGATGATGGTAA 1326 Query 1158 TGTTCATCTTTTCTTCAA-GTATTCTTAT-A--TCAAGATGATGTTTCTTCTGTCCAAC- 1212 |||||||||||||||||| ||||| || | | ||||| |||||||||||||||||||| Sbjct 1327 TGTTCATCTTTTCTTCAAAGTATTTTTTTTAAATCAAGGTGATGTTTCTTCTGTCCAACT 1386 Query 1213 -A--AA----TTTGTCCTGACTTCAAATGTCTGAAACCTCTTATA 1250 | || |||||||||| ||| |||||||||||| ||||||| Sbjct 1387 TATTAAACAATTTGTCCTGAATTCGAATGTCTGAAACGTCTTATA 1431 Score = 438 bits (237), Expect = 5e-122 Identities = 291/316 (92%), Gaps = 8/316 (3%) Strand=Plus/Plus Query 19 CTCTTCTTCGAATCTCCTCTTCGACGTCTC----T--TGTGCGCCGTCTTAACCTTACGT 72 ||||||||||| |||||||||||||||||| | |||||||||||||| |||||||| Sbjct 78 CTCTTCTTCGATTCTCCTCTTCGACGTCTCTTGTTACTGTGCGCCGTCTTAGCCTTACGT 137 Query 73 GCGCCGTTGGCGCACTCTCCTATCCTACGCTCATCTATCGTCACTCCCACAGCGAAAGCT 132 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 138 GCGCCAACGGCGCACTCTCCTATCCTACGCTCATCTATCGTCACTCCCACAGCGAGAGCT 197 Query 133 GTCTCCGACGTTTCCGGTAGTACCACGATCGATCCAGATTCTT-TCGTCGAGATCTCTGA 191 ||||| || ||||||||| |||| |||||||||||||||| || |||| ||||||||||| Sbjct 198 GTCTCGGAAGTTTCCGGTTGTACTACGATCGATCCAGATT-TTCTCGTAGAGATCTCTGA 256 Query 192 TTCTAACCAGACGCGAGCGATGTCGAAAGCTCGTGTTTACACCGACGTTAACGTGATTCG 251 ||||||||||||||| |||||||||||||||||||| |||||||| || || |||||||| Sbjct 257 TTCTAACCAGACGCGGGCGATGTCGAAAGCTCGTGTGTACACCGAAGTCAATGTGATTCG 316 Query 252 ACCTAAGGATTATTGGGATTACGAGTCACTCATTGTTCAATGGGGGGAGCAAGATGATTA 311 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 317 ACCCAAGGATTATTGGGATTACGAGTCACTCATTGTTCAATGGGGGGAGCAAGATGATTA 376 Query 312 TGAGGTAGTAAGGAAG 327 |||||||||||||||| Sbjct 377 TGAGGTAGTAAGGAAG 392 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61445467080 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5