BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496897
Length=2278
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67030.1 | Symbols: ABA1, LOS6, NPQ2, ATABA1, ZEP, IBS3, ATZ... 3485 0.0
> AT5G67030.1 | Symbols: ABA1, LOS6, NPQ2, ATABA1, ZEP, IBS3, ATZEP
| zeaxanthin epoxidase (ZEP) (ABA1) | chr5:26753510-26757236
REVERSE LENGTH=2385
Length=2385
Score = 3485 bits (1887), Expect = 0.0
Identities = 2178/2312 (94%), Gaps = 46/2312 (2%)
Strand=Plus/Plus
Query 1 CCTCcttcttcttcaaacc-atttcttcttcttcttctCCTCTATTGTTCGAGTCAGAGT 59
||||||||||||||||||| |||||||||||||||||| ||| | ||| ||||| |||
Sbjct 6 CCTCCTTCTTCTTCAAACCAATTTCTTCTTCTTCTTCT-CTC-A-GGTTTGAGTCTGAGG 62
Query 60 CATCATAACAGATAAAGTCTTG-A-TTT--T--TGAATTCCAAACGGA------G---TT 104
||||| |||||||||||||||| | ||| | |||||| ||||||| | ||
Sbjct 63 CATCACAACAGATAAAGTCTTGAACTTTGATCAAGAATTCTAAACGGAGTTTTTGCTCTT 122
Query 105 -T--T---T------ACAATCGAGATGGGTTCAACTCTGTTTTGCTATTCGATCAATCCA 152
| | | | |||||||||||||||||||| ||||||||| || |||||||||
Sbjct 123 CTCGTCGGTGAAAGAAAAATCGAGATGGGTTCAACTCCGTTTTGCTACTCTATCAATCCA 182
Query 153 TCTCCATCAAAGCTTGATTTCACGAGGACCCATGTGTTTAGTCCCGTTGCTAAACAGTTT 212
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 183 TCTCCATCAAAGCTTGATTTCACGAGGACCCATGTGTTTAGTCCTGTTTCTAAACAGTTT 242
Query 213 TACTTAGATTTATCATCGTTTTCCGGAAAATCTGGTGGAGGATTATCTGGGTTTAGGAGC 272
|||||||||||||||||||||||||||||| | |||||| |||||||||||||||||
Sbjct 243 TACTTAGATTTATCATCGTTTTCCGGAAAA-C--CCGGAGGAGTATCTGGGTTTAGGAGC 299
Query 273 CGGAAAACTCTGGTCGGAGTAAAGGCGGCGACGGCGTTGGTTgagaaggaggagaagaga 332
|| | || || ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 300 CGTCGAGCTTTGCTCGGAGTAAAGGCGGCGACGGCGTTAGTTGAGAAGGAGGAGAAGAGA 359
Query 333 gaggcggtgccggagaagaagaagaaATCGAGGGTTTTAGTTGCCGGAGGTGGAATCGGA 392
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAGGCGGTGACGGAGAAGAAGAAGAAATCGAGGGTTTTAGTTGCCGGAGGTGGAATCGGA 419
Query 393 GGTTTGGTGTTTGCTTTAGCTGCCAAGAAGAAAGGATTCGATGTGTTAGTGTTTGAAAAA 452
|| ||||||||||||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 420 GGATTGGTGTTTGCTTTAGCGGCTAAGAAGAAAGGATTCGATGTGTTAGTGTTTGAGAAA 479
Query 453 GATTTGAGTGCTATAAGAGGAGAAGGACAATACAGAGGTCCGATTCAAATACAGAGCAAC 512
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 480 GATTTGAGTGCTATAAGAGGAGAAGGAAAATACAGAGGCCCGATTCAAATACAGAGCAAC 539
Query 513 GCTTTAGCTGCTTTGGAAGCTATTGATACTGATGTTGCTGAACAAGTTATGGAAGCTGGT 572
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 540 GCTTTAGCTGCTTTGGAAGCTATTGATATTGAAGTTGCTGAACAAGTTATGGAAGCTGGG 599
Query 573 TGTATTACCGGTGATCGGATTAACGGTCTCGTCGACGGTGTCTCTGGTAGTTGGTATGTC 632
||||| || ||||||||||||||||||||||| || ||| ||||||||| |||||||||
Sbjct 600 TGTATCACTGGTGATCGGATTAACGGTCTCGTTGATGGTATCTCTGGTACTTGGTATGTA 659
Query 633 AAGTTTGATACTTTCACTCCTGCGGCGTCACGGGGACTTCCTGTGACTCGAGTAATTAGT 692
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 660 AAGTTTGATACTTTCACTCCTGCGGCGTCACGGGGACTTCCTGTGACTAGAGTAATTAGT 719
Query 693 AGAATGACTCTGCAGCAGATTCTAGCACGCGCAGTTGGAGAAGATGTGATTAGAAACGAG 752
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 720 AGAATGACTCTGCAGCAGATTCTAGCACGTGCGGTTGGAGAAGATGTGATTAGAAACGAG 779
Query 753 AGTAATGTTGTTGATTTTGAAGATTCTGGAGATAAGGTAACTGTGGTGCTCGAGAATGGT 812
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 780 AGTAATGTTGTTGATTTTGAAGATTCTGGAGATAAGGTTACTGTGGTACTCGAGAATGGT 839
Query 813 CAACGCTATGAAGGTGATCTGCTTGTGGGTGCAGATGGCATTTGGTCTAAGGTGAGAAAT 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CAACGCTATGAAGGTGATCTGCTTGTGGGTGCAGATGGCATTTGGTCTAAGGTGAGAAAT 899
Query 873 AATTTGTTTGGTCGTAGTGAAGCTACTTATTCAGGCTACACTTGTTACACGGGGATCGCA 932
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 900 AATTTGTTTGGCCGTAGTGAAGCTACTTATTCAGGCTACACTTGTTACACGGGGATTGCA 959
Query 933 GATTTTGTACCTGCGGATATCGAGTCTGTTGGCTACCGGGTTTTCTTGGGACATAAACAG 992
|||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 960 GATTTTATACCAGCGGATATCGAGTCTGTTGGCTACCGGGTTTTCTTGGGACACAAACAG 1019
Query 993 TACTTTGTTTCTTCTGATGTTGGTGGAGGAAAAATGCAATGGTATGCATTTCACGAGGAA 1052
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1020 TACTTTGTTTCTTCGGATGTTGGTGGTGGAAAAATGCAATGGTATGCATTTCACGAGGAA 1079
Query 1053 CCAGCTGGTGGGGTTGATACTCCAAATGGTATGAAGAAAAGATTGTTTGAAATATTTGAC 1112
||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1080 CCAGCTGGTGGGGCTGATGCTCCAAATGGTATGAAGAAAAGGTTGTTTGAAATATTTGAC 1139
Query 1113 GGTTGGTGCGACAATGTACTCGACTTGTTACATGCGACTGAGGAGGATGCCATTCTGAGA 1172
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1140 GGTTGGTGCGACAATGTACTCGACTTGTTGCATGCGACTGAGGAGGAAGCCATTCTGAGA 1199
Query 1173 AGAGATATCTATGATAGAAGTCCTAGTTTTACTTGGGGTAAAGGTCGTGTTACGCTGCTC 1232
|||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1200 AGAGATATTTATGATAGAAGTCCTGGTTTTACTTGGGGTAAAGGGCGTGTTACGCTGCTC 1259
Query 1233 GGGGATTCTATCCATGCGATGCAGCCAAATATGGGTCAAGGTGGATGCATGGCCATTGAG 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GGGGATTCTATCCATGCGATGCAGCCAAATATGGGTCAAGGTGGATGCATGGCCATTGAG 1319
Query 1293 GATAGTTTTCAACTAGCATTGGAGCTTGAAGAAGCATGGAAACAGAGTGTTGGAACTAAT 1352
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | |
Sbjct 1320 GATAGTTTTCAACTAGCATTGGAGCTTGATGAAGCATGGAAACAGAGTGTTGAAACGACT 1379
Query 1353 ACACCTGTTGATGTTGTTTCCTCTTTGAAAAGATATGAAGAATCTAGAAGACTCAGAGTC 1412
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1380 ACACCTGTTGATGTTGTTTCCTCTTTGAAAAGATATGAGGAATCTAGAAGACTGAGAGTC 1439
Query 1413 GCTATTATCCATGGGATGGCGAGGATGGCTGCAATTATGGCTTCCACTTACAAAGCATAC 1472
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GCTATTATCCATGCAATGGCGAGGATGGCTGCAATTATGGCTTCCACTTACAAAGCATAC 1499
Query 1473 TTAGGTGTTGGGCTTGGTCCTCTTTCTTTCTTGACAAAGTTTAGAGTACCGCATCCCGGA 1532
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 1500 TTAGGTGTTGGGCTTGGTCCTCTGTCTTTCTTGACAAAGTTTAGAGTACCACATCCAGGA 1559
Query 1533 AGAGTTGGTGGGAGATTCTTCGTTGACATTGCTATGCCATTGATGCTTGACTGGGTCCTT 1592
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1560 AGAGTTGGTGGTAGATTCTTCGTTGACATTGCTATGCCATCGATGCTTGACTGGGTCCTT 1619
Query 1593 GGAGGTAACAGTGAAAAACTCGAAGGAAGGCCACCTAGTTGCAGACTCACTGACAAAGCC 1652
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1620 GGAGGTAACAGTGAAAAACTCCAAGGAAGGCCACCTAGTTGCAGACTCACTGACAAAGCC 1679
Query 1653 GATGATCGGCTTCGAGAGTGGTTTGAAGATGACGACGCTCTTGAACGCACTATAAAGGGA 1712
||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1680 GATGACCGGCTTCGAGAGTGGTTTGAAGATGACGATGCTCTTGAACGTACTATAAAGGGA 1739
Query 1713 GAATGGTATCTAATTCCACACGGCGAAGATTGTTGTGTTTCGGAAACATTATGTCTAACC 1772
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1740 GAATGGTATCTAATTCCACACGGCGACGATTGTTGCGTTTCGGAAACATTATGTCTAACC 1799
Query 1773 AAAGATGAAGATCAACCTTGCATCGTCGGAAGCGAACCAGATCAAGATTTTCCTGGAATG 1832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 AAAGATGAAGATCAACCTTGCATCGTCGGAAGCGAACCAGATCAAGATTTTCCTGGAATG 1859
Query 1833 CGCATTGTGATCCCTTCGTCTCAGGTTTCGAAGATGCATGCTCGTGTGATTTACAAAGAC 1892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1860 CGCATTGTGATCCCTTCGTCTCAGGTTTCGAAGATGCATGCTCGTGTGATTTACAAAGAC 1919
Query 1893 GGAGCTTTCTTCTTGATGGATCTTCGAAGCGAACACGGAACCTATGTGACCGATAACGAA 1952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1920 GGAGCTTTCTTCTTGATGGATCTTCGAAGCGAACACGGAACCTATGTGACCGATAACGAA 1979
Query 1953 GGAAGAAGATATAGAGCGACACCGAATTTTCCCGCGCGGTTTAGATCGTCCGACATCATC 2012
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1980 GGAAGAAGATATAGAGCAACACCGAATTTTCCCGCGCGGTTTAGATCGTCCGACATCATC 2039
Query 2013 GAGTTTGGTTCAGATAAGAAGGCGGCGTTTAGGGTGAAAGTAATCAGGAAAACTCCGAAA 2072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2040 GAGTTTGGTTCAGATAAGAAGGCGGCGTTTAGGGTGAAAGTAATCAGGAAAACTCCGAAA 2099
Query 2073 TCGACGAGGAAGAATGAGAGTAAC---GATAAATTACTTCAGACAGCTTGAAATTAGTAA 2129
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 2100 TCGACGAGGAAGAATGAGAGTAACAACGATAAATTACTTCAGACAGCTTGAAATAAGTAA 2159
Query 2130 ACCGATGGTGAAATTAAGTA-TTTTA-TCGGTTTGGCAGATATTTTGTGTAGTCATTTTC 2187
|||||||||||||||||||| ||||| ||||||||||||||| |||| ||||| ||||||
Sbjct 2160 ACCGATGGTGAAATTAAGTAATTTTAATCGGTTTGGCAGATAATTTGAGTAGTAATTTTC 2219
Query 2188 TCAAAAGaaaaaaaaaaaaaTCTGCTTTCAGCTATTCCTTGCATTACAATGTATATATAG 2247
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 2220 TCAAAAGAAAAAAAA-----TCTGCTTTCAGCTATTCCTTGCATGACAATGTATATATAG 2274
Query 2248 GCCTGAAACAAAAAGATAAGT-ATACAAGACA 2278
| ||||||||||| |||| | ||||||||||
Sbjct 2275 GTCTGAAACAAAAT-ATAAATTATACAAGACA 2305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113051627340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5