BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg496922

Length=575
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G66780.1 | Symbols:  | unknown protein; Has 1807 Blast hits ...   610    5e-174


> AT5G66780.1 | Symbols:  | unknown protein; Has 1807 Blast hits 
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; 
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other 
Eukaryotes - 339 (source: NCBI BLink). | chr5:26663573-26664403 
FORWARD LENGTH=627
Length=627

 Score =  610 bits (330),  Expect = 5e-174
 Identities = 401/435 (92%), Gaps = 6/435 (1%)
 Strand=Plus/Plus

Query  1    AAAACCTACTTGCTCTATAAATTTAAGCTTCAAGAAACCTCCAAAAGCTGAGAAATGATC  60
            |||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  1    AAAAACTACTTACTCTATAAATTTAAGCTTCAAGAAACCTCCAAAAGCAGAGAAATGATC  60

Query  61   AACGCGTTAAAGTCCATCCGATCACTGCCCTCGAATACC---GTCTATTTCTTCTCACCG  117
            ||||| || ||| | ||||||||||||||||||||||||   ||||  |||| |||| | 
Sbjct  61   AACGCTTTTAAGACTATCCGATCACTGCCCTCGAATACCACCGTCTCGTTCTGCTCAACA  120

Query  118  CCGTCTCGATTAGGCCGCAAAGTCACTGGAGTTAGTTTTGCCACCTCTTCTGATGATCAG  177
            || |||||||||||||| ||||||||||||||||||||||||||| ||||||||   |||
Sbjct  121  CCATCTCGATTAGGCCGGAAAGTCACTGGAGTTAGTTTTGCCACCACTTCTGAT---CAG  177

Query  178  CAAAAGATGGATAAAAAGCCTGAAAACCCAAACGAGAAAACCGGTGACGTGATGTCGCAT  237
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  178  CAAAAGATGGATAAAAAGCCTGAAAATCCAAACGAGAAAACCGGTGACGTGATGTCGCAT  237

Query  238  TCGTATGGAGAAGGGTACGCAACAAGGTCTGATGAAGAAGGGTTTGGAGGAACCTATGGA  297
            || ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct  238  TCTTATGGAGAAGGGTACGCAACAAGGTCTGACGAAGAAGGGTTTGGAGGAATCTATGGA  297

Query  298  GGAAATCAAACACTTCAAAAGGAAAACGAGATCCATGAGAATCACCCTGATTATGACGAA  357
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||
Sbjct  298  GGAAATCAAACACTTCAGAAGGAAAACGAGATCCATGAGAATCACCCTGATTACGACAAA  357

Query  358  ACTCAAGGTAGCGAAGCTAAGGAGAAGGAGAAAGCAAGGAACCAGACACAATCTCACTGT  417
            || |||||||||||| | ||||||||||||||||||||||||||||||||||| ||||| 
Sbjct  358  ACGCAAGGTAGCGAATCGAAGGAGAAGGAGAAAGCAAGGAACCAGACACAATCCCACTGC  417

Query  418  TGAAGAAAAAATGAT  432
            | |||||||||||||
Sbjct  418  TAAAGAAAAAATGAT  432


 Score =  148 bits (80),  Expect = 4e-35
 Identities = 134/157 (85%), Gaps = 15/157 (10%)
 Strand=Plus/Plus

Query  433  AAATCAGGCTTATGCTCTGTAGTTTGTAGACTTTGGTTTGAG------TATT-TTAATTG  485
            ||||||| ||| |||||||||||| ||||||| ||||| |||      | || |||||||
Sbjct  465  AAATCAGACTTGTGCTCTGTAGTTCGTAGACTCTGGTTAGAGTTTTTTTTTTGTTAATTG  524

Query  486  CGTTTTTTGACCCGTAACCTTTACCGGGttttttttGGGTTATCCTTAT-------GTAA  538
            ||||||||||||||||||||||||||||||||| |||| ||||||||||       ||||
Sbjct  525  CGTTTTTTGACCCGTAACCTTTACCGGGTTTTTGTTGG-TTATCCTTATCACTTTTGTAA  583

Query  539  CACTCGTTGAATTAGTAGTTTTTGTTGATTATTGAAC  575
            |||||||||||||||||||||||||||||| ||||||
Sbjct  584  CACTCGTTGAATTAGTAGTTTTTGTTGATTGTTGAAC  620



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27628780850


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5