BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496922 Length=575 Score E Sequences producing significant alignments: (Bits) Value AT5G66780.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 610 5e-174 > AT5G66780.1 | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26663573-26664403 FORWARD LENGTH=627 Length=627 Score = 610 bits (330), Expect = 5e-174 Identities = 401/435 (92%), Gaps = 6/435 (1%) Strand=Plus/Plus Query 1 AAAACCTACTTGCTCTATAAATTTAAGCTTCAAGAAACCTCCAAAAGCTGAGAAATGATC 60 |||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1 AAAAACTACTTACTCTATAAATTTAAGCTTCAAGAAACCTCCAAAAGCAGAGAAATGATC 60 Query 61 AACGCGTTAAAGTCCATCCGATCACTGCCCTCGAATACC---GTCTATTTCTTCTCACCG 117 ||||| || ||| | |||||||||||||||||||||||| |||| |||| |||| | Sbjct 61 AACGCTTTTAAGACTATCCGATCACTGCCCTCGAATACCACCGTCTCGTTCTGCTCAACA 120 Query 118 CCGTCTCGATTAGGCCGCAAAGTCACTGGAGTTAGTTTTGCCACCTCTTCTGATGATCAG 177 || |||||||||||||| ||||||||||||||||||||||||||| |||||||| ||| Sbjct 121 CCATCTCGATTAGGCCGGAAAGTCACTGGAGTTAGTTTTGCCACCACTTCTGAT---CAG 177 Query 178 CAAAAGATGGATAAAAAGCCTGAAAACCCAAACGAGAAAACCGGTGACGTGATGTCGCAT 237 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 178 CAAAAGATGGATAAAAAGCCTGAAAATCCAAACGAGAAAACCGGTGACGTGATGTCGCAT 237 Query 238 TCGTATGGAGAAGGGTACGCAACAAGGTCTGATGAAGAAGGGTTTGGAGGAACCTATGGA 297 || ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| Sbjct 238 TCTTATGGAGAAGGGTACGCAACAAGGTCTGACGAAGAAGGGTTTGGAGGAATCTATGGA 297 Query 298 GGAAATCAAACACTTCAAAAGGAAAACGAGATCCATGAGAATCACCCTGATTATGACGAA 357 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| || Sbjct 298 GGAAATCAAACACTTCAGAAGGAAAACGAGATCCATGAGAATCACCCTGATTACGACAAA 357 Query 358 ACTCAAGGTAGCGAAGCTAAGGAGAAGGAGAAAGCAAGGAACCAGACACAATCTCACTGT 417 || |||||||||||| | ||||||||||||||||||||||||||||||||||| ||||| Sbjct 358 ACGCAAGGTAGCGAATCGAAGGAGAAGGAGAAAGCAAGGAACCAGACACAATCCCACTGC 417 Query 418 TGAAGAAAAAATGAT 432 | ||||||||||||| Sbjct 418 TAAAGAAAAAATGAT 432 Score = 148 bits (80), Expect = 4e-35 Identities = 134/157 (85%), Gaps = 15/157 (10%) Strand=Plus/Plus Query 433 AAATCAGGCTTATGCTCTGTAGTTTGTAGACTTTGGTTTGAG------TATT-TTAATTG 485 ||||||| ||| |||||||||||| ||||||| ||||| ||| | || ||||||| Sbjct 465 AAATCAGACTTGTGCTCTGTAGTTCGTAGACTCTGGTTAGAGTTTTTTTTTTGTTAATTG 524 Query 486 CGTTTTTTGACCCGTAACCTTTACCGGGttttttttGGGTTATCCTTAT-------GTAA 538 ||||||||||||||||||||||||||||||||| |||| |||||||||| |||| Sbjct 525 CGTTTTTTGACCCGTAACCTTTACCGGGTTTTTGTTGG-TTATCCTTATCACTTTTGTAA 583 Query 539 CACTCGTTGAATTAGTAGTTTTTGTTGATTATTGAAC 575 |||||||||||||||||||||||||||||| |||||| Sbjct 584 CACTCGTTGAATTAGTAGTTTTTGTTGATTGTTGAAC 620 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27628780850 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5