BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496946
Length=653
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66590.1 | Symbols: | CAP (Cysteine-rich secretory proteins... 863 0.0
> AT5G66590.1 | Symbols: | CAP (Cysteine-rich secretory proteins,
Antigen 5, and Pathogenesis-related 1 protein) superfamily
protein | chr5:26574181-26574874 FORWARD LENGTH=694
Length=694
Score = 863 bits (467), Expect = 0.0
Identities = 579/631 (92%), Gaps = 16/631 (3%)
Strand=Plus/Plus
Query 1 tttttttATATACCTTTAATGACTATATAAACCGAACACTGATCTTTTTCAGGTTGCGAA 60
|||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 5 TTTTTTTATACATCTTTAATGACTATATAAACCAAACACTGATCTTTTTCAGGTTGCGAA 64
Query 61 TAAACCAACCAAGAATGGCTTTAACCCATCACATCATCTTCGTGGCACTTCTTGTCGTCT 120
| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 65 T--A--AACCAAGAATGGCTTTAACCCATCACATCATCTTCGTGGCACTTCTTGTCATCT 120
Query 121 CCGTCACAGCCATCTCTTCTGCTGCGAATCTGGAACCCAAACAAA-------C-CGTC-C 171
|||||| ||||||||| | || ||||| ||| |||||||||||| | | || |
Sbjct 121 CCGTCAAAGCCATCTCACCGGCGGCGAAACTGAAACCCAAACAAATCGTTTCCACTTCTC 180
Query 172 CT--A-CTTCTCCGGCAATCTCTACAGCGGCTAAAGCTTTCACGGATGCGCACAACAAGG 228
|| | || |||| |||||||| |||| |||||||||||||| ||||||||||||||||
Sbjct 181 CTCCACCTCCTCCAACAATCTCTGCAGCAGCTAAAGCTTTCACCGATGCGCACAACAAGG 240
Query 229 CCAGAGCCATGGTCGGTATTCCACCACTAGTTTGGAGCCAGACGCTGGAAGCTGCTGCGA 288
||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 CCAGAGCCATGGTTGGTGTTCCACCACTAGTTTGGAGCCAGACGTTGGAAGCTGCTGCGA 300
Query 289 GTCGGCTGGCTCGTTACCAGAGGAACCAGAAGAAGTGTGAGTTCGCGAGTCTTAACCCTG 348
||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 301 GTCGGTTGGCTCGTTACCAGAGGAACCAAAAGAAGTGTGAGTTCGCGAGTCTAAACCCTG 360
Query 349 GGAAATACGGAGCGAACCAGCTTTGGGCTAAGGGCTTAGTAGCCGTGACACCGTCTCTTG 408
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAAAATACGGCGCGAACCAGCTTTGGGCTAAGGGCTTAGTAGCCGTGACACCGTCTCTTG 420
Query 409 CGGTGGAGACTTGGGTGAAGGAGAAAACTTTCTACAACTACAAGTCAGACACGTGTGCTG 468
| |||||||||||||||||||||||| |||||||||| || |||||||||||||||||||
Sbjct 421 CTGTGGAGACTTGGGTGAAGGAGAAACCTTTCTACAATTATAAGTCAGACACGTGTGCTG 480
Query 469 CGAACCACACGTGCGGGGTCTATAAACAAGTCGTGTGGAGAAACTCTAAAGAGCTCGGAT 528
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
Sbjct 481 CGAACCACACGTGCGGGGTTTATAAACAAGTCGTCTGGAGAAACTCTAAAGAGCTCGGGT 540
Query 529 GTGCTCAAGCCACGTGTACGAAAGAGTCAACGGTTTTGACCATTTGTTTTTACAATCCTC 588
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 541 GTGCTCAAGCCACGTGTACGAAAGAGTCAACGGTGTTGACCATTTGTTTTTACAATCCTC 600
Query 589 CGGGAAATATAATTGGCCAAAAGCCTTACTA 619
| |||||| ||||||||||||||||||||||
Sbjct 601 CTGGAAATGTAATTGGCCAAAAGCCTTACTA 631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31547044316
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5