BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496947 Length=758 Score E Sequences producing significant alignments: (Bits) Value AT5G66580.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1118 0.0 > AT5G66580.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50800.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26572631-26573408 FORWARD LENGTH=778 Length=778 Score = 1118 bits (605), Expect = 0.0 Identities = 711/762 (93%), Gaps = 8/762 (1%) Strand=Plus/Plus Query 1 ACAACTCTTAAGAATAAACTTAAACTCACGAGTCAAGTCAATAGAGTTTAACGTTTTCAA 60 |||||||||||||||||| |||||||||||||||||||| | |||||| ||||||||||| Sbjct 18 ACAACTCTTAAGAATAAATTTAAACTCACGAGTCAAGTC-AGAGAGTTAAACGTTTTCAA 76 Query 61 AGACACATAAAC-AAAAATGGGAGCGTGCGTTTCACGTGAATCTTTGAGGAGCGATTCAG 119 |||||| ||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 77 AGACACTTAAACTAAAAATGGGAGCGTGCGCTTCACGTGAATCTTTGAGGAGTGATTCAG 136 Query 120 CGAAGCTTATACTCCTCGACGGGACTTTACAAGAGTTCTCATCTCCGGTCAAAGTTTGGC 179 ||||||| ||| | |||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 137 CGAAGCTGATATTACTCGACGGTACTTTACAGGAGTTCTCATCTCCGGTCAAAGTTTGGC 196 Query 180 AGATTCTACAGAAGAACCCTACGAGTTTCGTCTGTAACTCAGACGAAATGGACTTCGACG 239 ||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 197 AGATTTTGCAAAAGAACCCTACGAGTTTCGTCTGTAACTCAGACGAAATGGACTTCGACG 256 Query 240 ACGCAGTTTCAGCTGTCGCTGGCAACGAAGAGCTCCGATCAGGGCAGCTTTACTTTGTCT 299 ||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| Sbjct 257 ACGCAGTTTCAGCTGTCGCCGGCAACGAAGAGCTCCGATCAGGGCAGCTCTATTTTGTCT 316 Query 300 TGCCTCTGACGTGGCTCAATCATCCGCTACGGGCGGAGGAAATGGCGGCCTTGGCTGTTA 359 | ||||||||||||||||| |||||| || ||||||||||||||||||||||||| || | Sbjct 317 TACCTCTGACGTGGCTCAACCATCCGTTAAGGGCGGAGGAAATGGCGGCCTTGGCCGTGA 376 Query 360 AAGCTAGTTTGGCGTTGACCAAGAGCGGCGGCGTTGGTTGGGTTTCCGGTGACGACGATG 419 ||||||||| |||||||||||||||||| ||||| |||||||||||||| |||||||||| Sbjct 377 AAGCTAGTTCGGCGTTGACCAAGAGCGGTGGCGTCGGTTGGGTTTCCGGCGACGACGATG 436 Query 420 TAGCGATATCGGAAAAAACTTACCAAAAGAAAAACATCGCCGGAGTAAAGACGAACGGTG 479 || ||| |||||||||||||||||||||||||||||| |||||||| ||||| ||||||| Sbjct 437 TAACGACATCGGAAAAAACTTACCAAAAGAAAAACATTGCCGGAGTTAAGACAAACGGTG 496 Query 480 GTGGCGGAAGAGGTTGTGGTAAAGGGAAGAGGCGATTCACGGCTAATTTGACCACGATCG 539 |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 497 GTGGCGGAAGAGGTTGCGGTAAAGGGAAGAGGCGATTCACGGCTAATTTGAGCACGATCG 556 Query 540 CCGAGTAGGGTCAATTTAGTCATTTTCAGaaaaaaaTTCGACCGACGTATAAATTGTAAT 599 |||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||| Sbjct 557 CCGAGTAGGGTCAATTTAGTCATTTTGAGAAAAA--TG-GACCGACGTATAAATTGTAAT 613 Query 600 TAGAGATGTTTGACtttttttttttGGAGAAAAAATTATCCAGTAGAt-ttttttt--AT 656 |||| |||||||||||||||||| ||||||| |||||||||||||||| ||||||| || Sbjct 614 TAGAAATGTTTGACTTTTTTTTTATGGAGAACAAATTATCCAGTAGATGTTTTTTTTTAT 673 Query 657 TGCTCAGTAATTGAGAAATGGGCACGAGGATGAAGATATTCCGTTGATGTGATTCCAATC 716 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 674 TGCTCAGTAATTGAGAAATGGGCACGAGGATGAAGATATTCCATTGATGTGATTCCAATC 733 Query 717 TTAATAACAATGCAATTTCGTAGCTATATGAATCCTTTCATG 758 ||||||||| ||||||||||||||||||| |||| ||||||| Sbjct 734 TTAATAACATTGCAATTTCGTAGCTATATAAATCATTTCATG 775 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36821629751 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5