BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496967 Length=813 Score E Sequences producing significant alignments: (Bits) Value AT5G66400.1 | Symbols: RAB18, ATDI8 | Dehydrin family protein |... 824 0.0 > AT5G66400.1 | Symbols: RAB18, ATDI8 | Dehydrin family protein | chr5:26518297-26519242 REVERSE LENGTH=864 Length=864 Score = 824 bits (446), Expect = 0.0 Identities = 540/583 (93%), Gaps = 15/583 (3%) Strand=Plus/Plus Query 232 AGGTTATGGAACTGGTGGCCAAGGATACGGCACCGGGACCGGGACTGAAGCCTTTGGAAC 291 ||| || ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 275 AGGGTACGGAACCGGTGGCCAAGGATACGGAACCGGGACCGGGACTGAAGGCTTTGGAAC 334 Query 292 TGGCGGAGGAGCTAGGCACCAAGGCCAAGAGCAACTCCACAAGGAAAGTGGTGGTGGCTT 351 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 335 TGGCGGAGGAGCTAGGCACCACGGCCAAGAGCAACTCCACAAGGAAAGTGGTGGTGGCTT 394 Query 352 GGGAGGAATGCTTCATCGCTCCGGGTCTGGATCCAGCTCTAGCTCGGAGGATGATGGACA 411 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 395 GGGAGGAATGCTTCACCGCTCCGGATCTGGATCCAGCTCTAGCTCGGAGGATGATGGACA 454 Query 412 AGGAGGGAGGAGGAAGAAGGGAATAACACAAAAGATCAAGGAGAAGTTGCCAGGTCATCC 471 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 455 AGGAGGGAGGAGGAAGAAGGGAATAACACAAAAGATCAAGGAGAAGTTGCCAGGTCATCA 514 Query 472 TGACCAGTCGTCTGGTCAAGCTCAAGGGATGAGCGGCATGGGAACCGGATATGATGCTGG 531 ||| ||||| | ||||||||||||| |||| ||||||||||| |||||||||||||||| Sbjct 515 TGATCAGTC-T--GGTCAAGCTCAAGCGATGGGCGGCATGGGATCCGGATATGATGCTGG 571 Query 532 TGGCTACGGCGGTGAGCGCCAAGAGAAGAAGGGGATGATGGACAAGATCAAGGATAAGCT 591 ||||||||| ||||||| ||| |||||||||||||||||||||||||||||||| ||||| Sbjct 572 TGGCTACGGTGGTGAGCACCACGAGAAGAAGGGGATGATGGACAAGATCAAGGAAAAGCT 631 Query 592 TCCCGGTGGTGGTGGTCGTTAAGCTTCAAACAAACAAACGTCTATACATATTGAATAAAA 651 |||||||||||| ||||||||||| ||||| | || |||||||||| ||||||| Sbjct 632 TCCCGGTGGTGGC---CGTTAAGCTTCGAACAATC----GTGTATACATATTAAATAAAA 684 Query 652 ATAAGGAGGGTGTGTAACGCAGTCGCATTTGGTCGTTGTATGTGTGCTTTTTATGTATGT 711 |||| |||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 685 ATAATGAGGGTTTGTAACGCAGTCGCATTCGGTCGTTGTAT-TGTGCTTTTTATGTATGT 743 Query 712 ACGTCCTGCGATGTGTTGTTGGTTTA-TATACAGGAGTGTGTAATGAGCATCTGGCTCTT 770 |||||||||||||||| |||| |||| | |||| |||||||||||||||||||||||||| Sbjct 744 ACGTCCTGCGATGTGT-GTTG-TTTACT-TACATGAGTGTGTAATGAGCATCTGGCTCTT 800 Query 771 TTTATGTTCTGAGATGTTTGTATTATGTAATTTCATATCTATA 813 ||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 801 TTTATGTTCTGAGATGTTTGTGTTATGTAATTTCACATCTATA 843 Score = 209 bits (113), Expect = 3e-53 Identities = 171/195 (88%), Gaps = 20/195 (10%) Strand=Plus/Plus Query 1 ATCGATCAAACTCATCAAAGTCTAATATCACAAAGAAAGAGTTTAATATTCT-A-TAGCT 58 |||||||||||||||||||||||||||||||||||||||||||| | || | | ||||| Sbjct 1 ATCGATCAAACTCATCAAAGTCTAATATCACAAAGAAAGAGTTT--T-TT-TAACTAGCT 56 Query 59 TAGCTCAAAGTGTTTGCTTaagagaagaagaagaagaagaagaTGGCGTCTTACCAGAAT 118 ||||||||||||||||||| ||| | |||||||| ||||||||||||||||| Sbjct 57 TAGCTCAAAGTGTTTGCTT--------AAG-ACAAGAAGAACATGGCGTCTTACCAGAAC 107 Query 119 CGTCCAGGAGGTCAGGCCACTGACGAGTACGGAAACCCGATCCAGCAG---T-TGGACGA 174 |||||||||||||||||||||||||||||||||||||||||||||||| | || |||| Sbjct 108 CGTCCAGGAGGTCAGGCCACTGACGAGTACGGAAACCCGATCCAGCAGCAGTATG-ACGA 166 Query 175 GTACGGAAACCCGAT 189 ||||||||| ||||| Sbjct 167 GTACGGAAATCCGAT 181 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39584507836 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5