BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496995
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66180.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1882 0.0
> AT5G66180.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr5:26448938-26451154
FORWARD LENGTH=1437
Length=1437
Score = 1882 bits (1019), Expect = 0.0
Identities = 1164/1233 (94%), Gaps = 13/1233 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGAAACGTCGAAGCTACAGTTACCGGCGACTTTCCTTAGCTTTCTAGAGGCTAAT 60
|||||||||||||| |||||||||||||||| || ||||||||||||||||||||| |||
Sbjct 15 ATGGAAGAAACGTCCAAGCTACAGTTACCGGAGAGTTTCCTTAGCTTTCTAGAGGCGAAT 74
Query 61 GGCCTAGATCCTTCAATCTATACTCACGGAAATTCCATTCCACGCTATGTAAGGTTGAAA 120
||||| |||||||||||||||||||||||| |||| |||||||| |||||||||||||||
Sbjct 75 GGCCTTGATCCTTCAATCTATACTCACGGAGATTCAATTCCACGTTATGTAAGGTTGAAA 134
Query 121 CCTGGGTTCGAGGATGCTTTCGAAGAGATTGAATCCCAAATTAACTGTAAACTGGACAAG 180
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 135 CCTGGATTCGAGGATGCTTTCGAAGAGATTGAATCCGAAATTAACTGTAAACTGGAGAAG 194
Query 181 GTGAATTGGTTACCAGGTTTTTACTCTATCCCTCCACATGTTCATATAGCCAGATCCAAG 240
||||||||||||||||| |||||||| ||||||||| ||||||||||||||||| |||||
Sbjct 195 GTGAATTGGTTACCAGGATTTTACTCCATCCCTCCAGATGTTCATATAGCCAGAACCAAG 254
Query 241 GCGTATCAGCAAGGCACGATGTACGGAATCGATGCAGCTTCCGGTGCCGCTGTCTCAGCT 300
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 GCCTATCAGCAAGGCATGATGTACGGAATCGATGCAGCTTCCGGTGCCGCTGTCTCAGCT 314
Query 301 CTTGCTATCTCCCCAGGAGACCATGTCTTGGATCTTTGTGCTGCTCCTGGTGCTAAACTA 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 CTTGGTATCTCCCCAGGAGACCATGTCTTGGATCTTTGTGCTGCTCCTGGTGCTAAACTA 374
Query 361 TGTATGATGCTTGACCTGCTCGGTGACAAGGGCACTGCCACTGGTGTCGATGTTGCAAGG 420
||||||||||||||||| || ||| | ||||| |||||||| ||||||||||||||||||
Sbjct 375 TGTATGATGCTTGACCTACTGGGTCAGAAGGGTACTGCCACCGGTGTCGATGTTGCAAGG 434
Query 421 CATCGTCTTGCTGCCTGCACAACTATGCTTCTCAAA-TATGGGCTTGCTGAAAGGACCCG 479
||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||| |||
Sbjct 435 CATCGTCTTGCTGCCTGCAGAACTATGCTTCT-AAAGTATGGGCTTGCTGAAAGGAGCCG 493
Query 480 TCTTTTTCTTGCTGATGGAACCACTTTCTCAGTGCCACCAACCACTAACCTA-C------ 532
|||||||||||||||||||||||||||||||| |||||||||| |||||| |
Sbjct 494 GCTTTTTCTTGCTGATGGAACCACTTTCTCAGTCCCACCAACCAGAAACCTACCATGTGA 553
Query 533 --CATGTGTGGACGATCATGAAGACACATTCAAGCAGTGGACCTCCCGTAGACCTTACAA 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 GTCATGTGTGGACGATCATGAAGACACATTCAAGCAGTGGACCTCCCGTAGACCTTACAA 613
Query 591 AGAAAGGAAACAAGAAGCTAAGGCCAGGAAGAATTCTGTTTTGCCGCAGAATGGGCAGCC 650
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct 614 AGAAAGGAAACAAGAAGCTAAGGCAAGGAAGAATTCTGTTTTGCCGCAGAATGGACAGGC 673
Query 651 AGAAATTATTTTCTACGGACAGGGTTCTGGAGTAATCGGGCTTACAAAGAA-GCAACTTT 709
|||||||||||||||||||||||||||||||||||||||||| | |||||| | ||||||
Sbjct 674 AGAAATTATTTTCTACGGACAGGGTTCTGGAGTAATCGGGCTAAAAAAGAATG-AACTTT 732
Query 710 ATAGATCCCTTGACCAAGATGATTATGCATATTGTGGGTATGATAAGGTTCTTGTAGACG 769
||||||||||||||||| |||||||||||| || ||||||||||||||||||||| ||||
Sbjct 733 ATAGATCCCTTGACCAAAATGATTATGCATCTTATGGGTATGATAAGGTTCTTGTGGACG 792
Query 770 CAGAGTGCACACACGATGGTTCAATCAAACATATCCAGAAATTTGAGCAATGGGGTTGGA 829
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 793 CAGAGTGCACACACGATGGTTCGATCAAACATATCCAGAAATTTGAGCAATGGGGTTGGA 852
Query 830 CAACTCTGGAACGCCGTGTACTGGATGCTGAGAGAACCGATAGAAACTTATCAGCTCTTC 889
|||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||
Sbjct 853 AAACTCTGGAACGCCGTGTTCTGGATGCTGAGAGAACCGATACAAACTTAAAAGCTCTTC 912
Query 890 AGTTGAATCTACTGAGAAATGGATTCAGATTGTTGAAAGAAGCTGGCACCCTAGTGTACA 949
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 913 AGTTGAATCTACTGAGAAATGGATTCAGATTGTTGAAAGAAGCTGGCACTCTAGTGTACA 972
Query 950 GCACTTGCAGTTTGACGCATGCCCAAAACGAAGATGTGGTGGATCAGTTCCTTGCTGAAA 1009
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 973 GCACCTGCAGTTTGACGCATGCCCAAAACGAAGATGTGGTGGATCAGTTCCTTTCTGAAA 1032
Query 1010 ATTCCTCTGCAGAGCTAGAAGAGATTGAAATGGCCAAGGATTGGCCGTGTAGAAGTGGTC 1069
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 ATTTCTCTGCAGAGCTACAAGAGATTGAAATGGCCAAGGATTGGCCGTGTAGAAGTGGTC 1092
Query 1070 GCACGCCTAAGACACTGCGGTTTGATCCTTCCACCTCAGCAACCAGCGGCCTTTTCGTTG 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 GCACGCCTAAGACACTGCGGTTTGATCCTTCCACCTCAGCAACCAGCGGCCTTTTCGTTG 1152
Query 1130 CAAAAATCAGGAAATTGCCACCCAACGAAGCAAAGAAGAATGTTTTGTGATACCTCACTC 1189
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1153 CAAAAATCAGGAAATTGCCACCCAACGAAGCAAAGAAGAATGTGTTGTGATACCTCGCTC 1212
Query 1190 AAAAAGGTCGTTAGGTTGATGACTCTACTTAAA 1222
|||| ||||||| ||||||||||| |||| |||
Sbjct 1213 AAAAGGGTCGTTCGGTTGATGACTTTACTGAAA 1245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60039851820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5