BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496998
Length=699
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66170.2 | Symbols: STR18 | sulfurtransferase 18 | chr5:2644... 874 0.0
> AT5G66170.2 | Symbols: STR18 | sulfurtransferase 18 | chr5:26447648-26448727
FORWARD LENGTH=738
Length=738
Score = 874 bits (473), Expect = 0.0
Identities = 660/740 (89%), Gaps = 53/740 (7%)
Strand=Plus/Plus
Query 1 AACAAATTTCTAATGGTTAAATCATATACCATTA--TTTATATTGGCCATGCATTTGTAT 58
|||||||||||||| ||| ||||||||||||||| |||||||||||||||||| |||||
Sbjct 2 AACAAATTTCTAATTGTTGAATCATATACCATTATTTTTATATTGGCCATGCATGTGTAT 61
Query 59 AAGT----G---G---AATA-TAAAACAATATTATCTGTGTTTGGTCCTATTTATTACTC 107
|||| | | |||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 62 AAGTGGAAGATAGAACAATATTAAAACAATATTAT-TGTGTTTGGTCCTATTTATTACTC 120
Query 108 TCTGCTCTCTTCCTGAAG---CTTCATC-TTTTGTTTGGCAAGAAGAGGGAGAGAAGATC 163
|||||||||||||||||| ||||||| ||||||||| |||||||||| ||||||||
Sbjct 121 TCTGCTCTCTTCCTGAAGCTTCTTCATCTTTTTGTTTGACAAGAAGAGGTAGAGAAGA-- 178
Query 164 AGATGTCTCAATCAATCCCCTCCAGCACAAAGGCAGAAGAAGTTGTTAGTGTAGATGTGA 223
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AGATGTCTCAATCAATCTCCTCCAGCACAAAGGCAGAAGAAGTTGTTAGTGTAGATGTGA 238
Query 224 GCGAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGATGTTAGGACTCAGGAAG 283
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 239 GCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGGACTCAGGACG 298
Query 284 AGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACA 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 AGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACA 358
Query 344 CACCTCAAGGTAGAGTGAAGAATCAAGACTTCTTGGAGCAAGTCTCTTCTCTTCTCAACC 403
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 359 CACCTCAAGGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC 418
Query 404 CAGCTGATGATATCCTTGTGGGTTGTCAGAGTGGAGCCAGATCCTTAAAAGCCACAACTG 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CAGCTGATGATATCCTTGTGGGTTGTCAGAGTGGAGCCAGATCCTTAAAAGCCACAACTG 478
Query 464 AACTTGTTGCCGCAG---GT--TT-CAAGAAAGTGAGAAACATGGGAGGTGGCTACTTGG 517
|||||||||| |||| || || |||||||||||||||| ||||||||||||||||||
Sbjct 479 AACTTGTTGCTGCAGTAAGTGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGG 538
Query 518 CTTGGGTGGATCACAGCTTTCCCATCAACGA-GGAGGAGGAGGAGCCATCCGCAAACTAA 576
||||||||||||||||||||||||||||| | |||||||||||||||||| || || |||
Sbjct 539 CTTGGGTGGATCACAGCTTTCCCATCAAC-ACGGAGGAGGAGGAGCCATCTGCTAATTAA 597
Query 577 TCATATTAAGATTCTC----------AAT-AA-TA-TA-AT-TGGCTGTGTGATGTAATA 621
| || ||||||||||| ||| || || || | || |||||||||||| ||
Sbjct 598 TAATCTTAAGATTCTCTTCTTTTCTTAATCAAATAATATAACTGCCTGTGTGATGTAGTA 657
Query 622 AATCATTTTCTATTTAGAATTTTC--TTTCTTGTAATCAAAACTTTCATGTACTAGGTGC 679
| |||||||| ||||| |||| | ||||||||||||||||||||| ||||| |
Sbjct 658 A-TCATTTTCAATTTAAAATTC-CAGTTTCTTGTAATCAAAACTTTCGTGTACCA----- 710
Query 680 AATTTCAATAAAAGCTGTGT 699
|||| |||||||||||||||
Sbjct 711 AATT-CAATAAAAGCTGTGT 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33857815078
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5