BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg497006

Length=1529
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G66100.1 | Symbols:  | winged-helix DNA-binding transcriptio...  1738    0.0  


> AT5G66100.1 | Symbols:  | winged-helix DNA-binding transcription 
factor family protein | chr5:26427489-26430006 FORWARD LENGTH=1746
Length=1746

 Score = 1738 bits (941),  Expect = 0.0
 Identities = 1402/1605 (87%), Gaps = 109/1605 (7%)
 Strand=Plus/Plus

Query  1     CTCTCTCTTCCTCTGTTACAGGATGGCTACGACGGCGAGTAGTGCCGCTAATTCTGCATC  60
             |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  132   CTCTCTCTTCCTCTGTTACATGATGGCTACGACGGCGAGTAGTGCCGCTAATTCTGCATC  191

Query  61    TCGCTTCTCCATTGATTCCTCTTTGTCGCGATCAAGTCACAGCGATTCCTCTCCCTGGTT  120
             |||||||||||||||||||||| | ||||||||| ||||| |||||||||||||||||||
Sbjct  192   TCGCTTCTCCATTGATTCCTCTATCTCGCGATCACGTCACGGCGATTCCTCTCCCTGGTT  251

Query  121   GATGCCTGCTGCTGATTCCCATGATGATCCGGCTCCTTCCCTCTCCCAGGACGA------  174
             | | |||  | |||||||||||||| ||||| ||| ||||||||||||||||||      
Sbjct  252   GTTACCT--T-CTGATTCCCATGATCATCCGACTCTTTCCCTCTCCCAGGACGATCCCTT  308

Query  175   -T---C-CCTTC--T-T-------AACCGGAAATGGCACTTCCGACTACGACAATGCTGA  219
              |   | |||||  | |        |||||||||  | ||||||||||||||||||||||
Sbjct  309   CTCAGCGCCTTCGGTCTCCCCGCCCACCGGAAATAACTCTTCCGACTACGACAATGCTGA  368

Query  220   TCAGAAG---CCTCCTGTCTGGAACATGCCTTCTTCTAATAGCTCC-CC-----C-G--A  267
             | |||||   |||||||||||||||||||||||||||||||||||| ||     | |   
Sbjct  369   TAAGAAGCCTCCTCCTGTCTGGAACATGCCTTCTTCTAATAGCTCCTCCGATGTCGGCCC  428

Query  268   TGTCATGGGCGCCGCCGAATCCTGGCCTG------CTC-TTC-G---G-TCTTCTTCCAA  315
             |||||||||||||||||||||||||||||      ||| ||| |   | |||||||||| 
Sbjct  429   TGTCATGGGCGCCGCCGAATCCTGGCCTGCTCTCTCTCTTTCTGCTCGCTCTTCTTCCAT  488

Query  316   CAAGTCTCCCTCTTTCGATTCTTCCAAACCTTTAT-CTGATGGatcatcatcatcatcat  374
             ||||||||||||||| ||| ||||||||||||| | |||||||         |||||| |
Sbjct  489   CAAGTCTCCCTCTTTGGATGCTTCCAAACCTTT-TCCTGATGG---------ATCATCGT  538

Query  375   catcatcatcaCCAATGCCGCCTCCCCAGGCT-GGTGGAACTCC--TTTCAATGCCAATG  431
             |||||  ||     |  |||||||||||||||   |  ||| ||     |||||||||||
Sbjct  539   CATCA--AT-----A--CCGCCTCCCCAGGCTACTTCCAACACCAGCACCAATGCCAATG  589

Query  432   CTGGCTCAAGTGTTGCTGCTACCTCATCTGAAAACAATACTGTGAATAATAGCCCGAGGA  491
             | ||||| |||||| ||||||||||||||||||||| | |||| |||||||||| |||||
Sbjct  590   CAGGCTCGAGTGTTTCTGCTACCTCATCTGAAAACAGTGCTGTTAATAATAGCCAGAGGA  649

Query  492   AACCTTTTAGACGGAATAACAACGCATCATCTTCCAGTAGTCACATCT-CCAACCCAC-C  549
             ||||||||||||||||||||||| |||||||||||||||  | ||  |   || |  | |
Sbjct  650   AACCTTTTAGACGGAATAACAACACATCATCTTCCAGTA--C-CA-GTAGTAA-CGTCTC  704

Query  550   CAGTGCTGCGCCTTTTAACACCAGAGATCAGACTCACA-CTCAAAGGGGTGGT---TCTT  605
             || |||||||||||| |||||||||||||||| ||||| | ||||||||||||   ||||
Sbjct  705   CAATGCTGCGCCTTTAAACACCAGAGATCAGAATCACAGC-CAAAGGGGTGGTGGCTCTT  763

Query  606   ATGGCTCAGGGAATTTCCGTAATTCCCAGAGGAATCGCAACAACAGCTCTTACCCTCGTG  665
              ||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct  764   TTGGTTCAGGGAATTTCCGTAATTCTCAGAGGAATCGCAACAGCAGCTCTTACCCTCGTG  823

Query  666   GGGAAGGTCTTCACCATGGAAACAGGCGCAATTATGAG-A--G----C---G-GG-TTTT  713
             |||||||||||||||||||||||||||||||||||||| |  |    |   | || ||||
Sbjct  824   GGGAAGGTCTTCACCATGGAAACAGGCGCAATTATGAGCATGGCAACCAAAGCGGCTTTT  883

Query  714   CTCACCGTAACTATAGTGGGAGAGACATGCACTTGCAACCGCAGAGGGGTATTGGGATGA  773
             |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  884   CTCACCGTAACTATAGTGGGAGAGACATGCACTTGCAACCGCAGAGGGGTGTTGGGATGA  943

Query  774   TGAGACCGCAGATGCTGATGGGGCCACCATCTTTTCCTGCCAGTAGTGCGCAATATATGG  833
             | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  944   TTAGACCGCAGATGCTGATGGGGCCACCATCTTTTCCTGCCAGTAGTGCGCAATATATGG  1003

Query  834   CAGCGCCTCAATTAGGTTCATATGGTGGCCCCATGATCTACCCAGATTATGCACAGCATG  893
             |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  1004  CAGCGCCTCAATTAGGTTCATATGGTGGCCCCATTATCTACCCAGATTATGCACAGCATG  1063

Query  894   TCTTTATGCCAC--C--TC-C-AGACCCCATGGCTTTAGTTGGACCCTTCCCACCTCTGC  947
             ||||||||||||  |  || | ||| || |||| |||||||||||||||||||| ||  |
Sbjct  1064  TCTTTATGCCACATCCATCTCCAGATCCGATGGGTTTAGTTGGACCCTTCCCACTTCAAC  1123

Query  948   CCGTGTATTTTCCCAGTTATGATGCCATGTTGTACAATAAGATATTGACACAAGTAGAAT  1007
             || ||||||||| || || ||||||||| |||||||||||||||||||||||||||||||
Sbjct  1124  CCATGTATTTTCGCAATTTTGATGCCATCTTGTACAATAAGATATTGACACAAGTAGAAT  1183

Query  1008  ATTATTTCAGCGCTGATAACCTGAGCAGAGATGAACACTTGCGGGATCAGATGAATGATG  1067
             ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct  1184  ATTATTTCAGCGCTGATAACCTGAGCAGAGATGAACATTTACGGGATCAGATGAATGATG  1243

Query  1068  AAGGTTGGGTTCCTGTAAGAGTAATAGCAGGGTTCAGGAGACTTGCAGAACTGACCAACA  1127
             |||||||||||||||| |||||||||||||  |||||||||||||| ||||||||||| |
Sbjct  1244  AAGGTTGGGTTCCTGTTAGAGTAATAGCAGCATTCAGGAGACTTGCGGAACTGACCAATA  1303

Query  1128  ACATCCACACTATATTGGAAGCACTAAAAAGTTCAGAAGTCGTGGAAATTAAGGGTGAAA  1187
             ||||||| ||||||||||||||||| | |||||||||||||||||||||| |||||||||
Sbjct  1304  ACATCCAGACTATATTGGAAGCACTGAGAAGTTCAGAAGTCGTGGAAATTCAGGGTGAAA  1363

Query  1188  CATTGAGGAGGCGAGGAGATTGGGACAAGTATTTATTGCCTCGTGAGCCTTCAAAGTTCG  1247
             |||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct  1364  CATTAAGGAGGCGAGGAGATTGGGACAAGTATTTATTGCCTCGTGAGCCTTCAAGGTCCG  1423

Query  1248  GTCCAGCAGCGGGGGCTAGCAACAATGCCTCACTGGTGTCTCAACTTGAGAGCATGGCTC  1307
             ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct  1424  GTCCAGCTGCGGGGGCTAGCAACAATGCCTCACTGGTGTCTCAAATTGAGAGCATGACTC  1483

Query  1308  TATCagagaggagcagagagggagagtaa-agagatgcgactaagagagaggaagaaaga  1366
             |||||||||||||||||||||||| |||| |||||||| |||||||||||| ||||||||
Sbjct  1484  TATCAGAGAGGAGCAGAGAGGGAGTGTAAGAGAGATGCTACTAAGAGAGAGAAAGAAAGA  1543

Query  1367  TGTGTTTGCATGCctctctctctctTTCTTTCCttttttttGTTTTGTCGAGAATCGGAT  1426
             |||||||||| |||| ||||||| |  |||||||||||| ||||||||||||||| ||||
Sbjct  1544  TGTGTTTGCAAGCCTATCTCTCT-TC-CTTTCCTTTTTTGTGTTTTGTCGAGAATTGGAT  1601

Query  1427  AGGAACTGATTGATAGTCGGTCTCATCATAAGAAAAACAAATAATATGCTGCTCAACttt  1486
             | ||||||||||||| || ||||||| | || |||||||| |||||||||||||||||||
Sbjct  1602  ATGAACTGATTGATACTCAGTCTCATAAGAAAAAAAACAA-TAATATGCTGCTCAACTTT  1660

Query  1487  ttttgaacttttctggttttctttaaattttt--GGATAGGAAAC  1529
             |||||||||||||||||||| |  ||||||||  |||||||||||
Sbjct  1661  TTTTGAACTTTTCTGGTTTT-TA-AAATTTTTTTGGATAGGAAAC  1703



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 75451419135


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5