BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg497006 Length=1529 Score E Sequences producing significant alignments: (Bits) Value AT5G66100.1 | Symbols: | winged-helix DNA-binding transcriptio... 1738 0.0 > AT5G66100.1 | Symbols: | winged-helix DNA-binding transcription factor family protein | chr5:26427489-26430006 FORWARD LENGTH=1746 Length=1746 Score = 1738 bits (941), Expect = 0.0 Identities = 1402/1605 (87%), Gaps = 109/1605 (7%) Strand=Plus/Plus Query 1 CTCTCTCTTCCTCTGTTACAGGATGGCTACGACGGCGAGTAGTGCCGCTAATTCTGCATC 60 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 132 CTCTCTCTTCCTCTGTTACATGATGGCTACGACGGCGAGTAGTGCCGCTAATTCTGCATC 191 Query 61 TCGCTTCTCCATTGATTCCTCTTTGTCGCGATCAAGTCACAGCGATTCCTCTCCCTGGTT 120 |||||||||||||||||||||| | ||||||||| ||||| ||||||||||||||||||| Sbjct 192 TCGCTTCTCCATTGATTCCTCTATCTCGCGATCACGTCACGGCGATTCCTCTCCCTGGTT 251 Query 121 GATGCCTGCTGCTGATTCCCATGATGATCCGGCTCCTTCCCTCTCCCAGGACGA------ 174 | | ||| | |||||||||||||| ||||| ||| |||||||||||||||||| Sbjct 252 GTTACCT--T-CTGATTCCCATGATCATCCGACTCTTTCCCTCTCCCAGGACGATCCCTT 308 Query 175 -T---C-CCTTC--T-T-------AACCGGAAATGGCACTTCCGACTACGACAATGCTGA 219 | | ||||| | | ||||||||| | |||||||||||||||||||||| Sbjct 309 CTCAGCGCCTTCGGTCTCCCCGCCCACCGGAAATAACTCTTCCGACTACGACAATGCTGA 368 Query 220 TCAGAAG---CCTCCTGTCTGGAACATGCCTTCTTCTAATAGCTCC-CC-----C-G--A 267 | ||||| |||||||||||||||||||||||||||||||||||| || | | Sbjct 369 TAAGAAGCCTCCTCCTGTCTGGAACATGCCTTCTTCTAATAGCTCCTCCGATGTCGGCCC 428 Query 268 TGTCATGGGCGCCGCCGAATCCTGGCCTG------CTC-TTC-G---G-TCTTCTTCCAA 315 ||||||||||||||||||||||||||||| ||| ||| | | |||||||||| Sbjct 429 TGTCATGGGCGCCGCCGAATCCTGGCCTGCTCTCTCTCTTTCTGCTCGCTCTTCTTCCAT 488 Query 316 CAAGTCTCCCTCTTTCGATTCTTCCAAACCTTTAT-CTGATGGatcatcatcatcatcat 374 ||||||||||||||| ||| ||||||||||||| | ||||||| |||||| | Sbjct 489 CAAGTCTCCCTCTTTGGATGCTTCCAAACCTTT-TCCTGATGG---------ATCATCGT 538 Query 375 catcatcatcaCCAATGCCGCCTCCCCAGGCT-GGTGGAACTCC--TTTCAATGCCAATG 431 ||||| || | ||||||||||||||| | ||| || ||||||||||| Sbjct 539 CATCA--AT-----A--CCGCCTCCCCAGGCTACTTCCAACACCAGCACCAATGCCAATG 589 Query 432 CTGGCTCAAGTGTTGCTGCTACCTCATCTGAAAACAATACTGTGAATAATAGCCCGAGGA 491 | ||||| |||||| ||||||||||||||||||||| | |||| |||||||||| ||||| Sbjct 590 CAGGCTCGAGTGTTTCTGCTACCTCATCTGAAAACAGTGCTGTTAATAATAGCCAGAGGA 649 Query 492 AACCTTTTAGACGGAATAACAACGCATCATCTTCCAGTAGTCACATCT-CCAACCCAC-C 549 ||||||||||||||||||||||| ||||||||||||||| | || | || | | | Sbjct 650 AACCTTTTAGACGGAATAACAACACATCATCTTCCAGTA--C-CA-GTAGTAA-CGTCTC 704 Query 550 CAGTGCTGCGCCTTTTAACACCAGAGATCAGACTCACA-CTCAAAGGGGTGGT---TCTT 605 || |||||||||||| |||||||||||||||| ||||| | |||||||||||| |||| Sbjct 705 CAATGCTGCGCCTTTAAACACCAGAGATCAGAATCACAGC-CAAAGGGGTGGTGGCTCTT 763 Query 606 ATGGCTCAGGGAATTTCCGTAATTCCCAGAGGAATCGCAACAACAGCTCTTACCCTCGTG 665 ||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||| Sbjct 764 TTGGTTCAGGGAATTTCCGTAATTCTCAGAGGAATCGCAACAGCAGCTCTTACCCTCGTG 823 Query 666 GGGAAGGTCTTCACCATGGAAACAGGCGCAATTATGAG-A--G----C---G-GG-TTTT 713 |||||||||||||||||||||||||||||||||||||| | | | | || |||| Sbjct 824 GGGAAGGTCTTCACCATGGAAACAGGCGCAATTATGAGCATGGCAACCAAAGCGGCTTTT 883 Query 714 CTCACCGTAACTATAGTGGGAGAGACATGCACTTGCAACCGCAGAGGGGTATTGGGATGA 773 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 884 CTCACCGTAACTATAGTGGGAGAGACATGCACTTGCAACCGCAGAGGGGTGTTGGGATGA 943 Query 774 TGAGACCGCAGATGCTGATGGGGCCACCATCTTTTCCTGCCAGTAGTGCGCAATATATGG 833 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 944 TTAGACCGCAGATGCTGATGGGGCCACCATCTTTTCCTGCCAGTAGTGCGCAATATATGG 1003 Query 834 CAGCGCCTCAATTAGGTTCATATGGTGGCCCCATGATCTACCCAGATTATGCACAGCATG 893 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1004 CAGCGCCTCAATTAGGTTCATATGGTGGCCCCATTATCTACCCAGATTATGCACAGCATG 1063 Query 894 TCTTTATGCCAC--C--TC-C-AGACCCCATGGCTTTAGTTGGACCCTTCCCACCTCTGC 947 |||||||||||| | || | ||| || |||| |||||||||||||||||||| || | Sbjct 1064 TCTTTATGCCACATCCATCTCCAGATCCGATGGGTTTAGTTGGACCCTTCCCACTTCAAC 1123 Query 948 CCGTGTATTTTCCCAGTTATGATGCCATGTTGTACAATAAGATATTGACACAAGTAGAAT 1007 || ||||||||| || || ||||||||| ||||||||||||||||||||||||||||||| Sbjct 1124 CCATGTATTTTCGCAATTTTGATGCCATCTTGTACAATAAGATATTGACACAAGTAGAAT 1183 Query 1008 ATTATTTCAGCGCTGATAACCTGAGCAGAGATGAACACTTGCGGGATCAGATGAATGATG 1067 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 1184 ATTATTTCAGCGCTGATAACCTGAGCAGAGATGAACATTTACGGGATCAGATGAATGATG 1243 Query 1068 AAGGTTGGGTTCCTGTAAGAGTAATAGCAGGGTTCAGGAGACTTGCAGAACTGACCAACA 1127 |||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||| | Sbjct 1244 AAGGTTGGGTTCCTGTTAGAGTAATAGCAGCATTCAGGAGACTTGCGGAACTGACCAATA 1303 Query 1128 ACATCCACACTATATTGGAAGCACTAAAAAGTTCAGAAGTCGTGGAAATTAAGGGTGAAA 1187 ||||||| ||||||||||||||||| | |||||||||||||||||||||| ||||||||| Sbjct 1304 ACATCCAGACTATATTGGAAGCACTGAGAAGTTCAGAAGTCGTGGAAATTCAGGGTGAAA 1363 Query 1188 CATTGAGGAGGCGAGGAGATTGGGACAAGTATTTATTGCCTCGTGAGCCTTCAAAGTTCG 1247 |||| ||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 1364 CATTAAGGAGGCGAGGAGATTGGGACAAGTATTTATTGCCTCGTGAGCCTTCAAGGTCCG 1423 Query 1248 GTCCAGCAGCGGGGGCTAGCAACAATGCCTCACTGGTGTCTCAACTTGAGAGCATGGCTC 1307 ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 1424 GTCCAGCTGCGGGGGCTAGCAACAATGCCTCACTGGTGTCTCAAATTGAGAGCATGACTC 1483 Query 1308 TATCagagaggagcagagagggagagtaa-agagatgcgactaagagagaggaagaaaga 1366 |||||||||||||||||||||||| |||| |||||||| |||||||||||| |||||||| Sbjct 1484 TATCAGAGAGGAGCAGAGAGGGAGTGTAAGAGAGATGCTACTAAGAGAGAGAAAGAAAGA 1543 Query 1367 TGTGTTTGCATGCctctctctctctTTCTTTCCttttttttGTTTTGTCGAGAATCGGAT 1426 |||||||||| |||| ||||||| | |||||||||||| ||||||||||||||| |||| Sbjct 1544 TGTGTTTGCAAGCCTATCTCTCT-TC-CTTTCCTTTTTTGTGTTTTGTCGAGAATTGGAT 1601 Query 1427 AGGAACTGATTGATAGTCGGTCTCATCATAAGAAAAACAAATAATATGCTGCTCAACttt 1486 | ||||||||||||| || ||||||| | || |||||||| ||||||||||||||||||| Sbjct 1602 ATGAACTGATTGATACTCAGTCTCATAAGAAAAAAAACAA-TAATATGCTGCTCAACTTT 1660 Query 1487 ttttgaacttttctggttttctttaaattttt--GGATAGGAAAC 1529 |||||||||||||||||||| | |||||||| ||||||||||| Sbjct 1661 TTTTGAACTTTTCTGGTTTT-TA-AAATTTTTTTGGATAGGAAAC 1703 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75451419135 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5