BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg497022 Length=1545 Score E Sequences producing significant alignments: (Bits) Value AT5G65990.1 | Symbols: | Transmembrane amino acid transporter ... 2464 0.0 > AT5G65990.1 | Symbols: | Transmembrane amino acid transporter family protein | chr5:26394882-26396513 FORWARD LENGTH=1549 Length=1549 Score = 2464 bits (1334), Expect = 0.0 Identities = 1481/1550 (96%), Gaps = 18/1550 (1%) Strand=Plus/Plus Query 1 GAGATCGATCGCCATTAACGTCGACTGTGACTCTCGGTTCTTCTTCACTCTCAATTTCGA 60 ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| Sbjct 9 GAGATCGATCGCCATTAACGTAGACTGTGACTCTCGGCTCTTCTTCACTCTCAATTTCG- 67 Query 61 TTATCTCGTCAGCATGAGGTACGATCAGGAAGCGGGATCGTCCTCCC-TGTCGCTGCCTT 119 | ||| |||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 68 --A--TCG---GCATGAGGTACGATCAGGAAGCGGGATCGTCCTCCCAT-TCGCTGCCTT 119 Query 120 CGGGATCATCCTCCCATTCGCTGCCGCCGACGGAAGACACTCCTCTTTTGGGGCCTCGAA 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 CGGGATCATCCTCCCATTCGCTGCCGCCGACGGAAGACACTCCTCTTTTGGGGCCTCGAA 179 Query 180 CATTGTCGTCGCACCCAAAAACCTTTGCAAATGTCTTCATCGCCATCGTCGGCGCCGGCG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 CATTGTCGTCGCAGCCAAAAACCTTTGCAAATGTCTTCATCGCCATCGTCGGCGCCGGCG 239 Query 240 TGCTCGGACTTCCGTACACCTTCAAGAAGACTGGATGGCTCTTGGGCCTCCTCACTCTCC 299 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 240 TGCTCGGACTTCCGTACACCTTCAAGAAGACTGGATGGCTCTTGGGCCTCCTCACACTCC 299 Query 300 TCTTCGTATCCTCCCTCACCTTCTTCTGTATGATGCTCCTCGTCCACACCCGCCGGAAAC 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TCTTCGTATCCTCCCTCACCTTCTTCTGTATGATGCTCCTCGTCCACACCCGCCGGAAAC 359 Query 360 TCGAGTCCCTCTCCGGCTTCAACAGCATCACTTCTTTCGGAGACCTCGGCGAATCTGTCT 419 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 360 TCGAGTCCCTCTCCGGCTTCAACAGCATCACTTCTTTCGGAGATCTCGGCGAATCCGTCT 419 Query 420 GCGGACCTGCCGGCCGTCTCGTCGTAGATGTAATGCTTGTCCTTTCCCAATCTGGCTTCT 479 |||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 420 GCGGCCCTGCCGGTCGTCTCGTCGTCGATGTTATGCTTGTCCTTTCCCAATCTGGCTTCT 479 Query 480 GCGTCAGCTATCTAATCTTCGTCGCCACCACAATGGCTAATCTCCTCAACCGCAGCACCG 539 ||||||| || || |||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 480 GCGTCAGTTACCTTATCTTCGTCGCCACCACAATGGCTAATCTCCTCAGCCGCGGCACCG 539 Query 540 AACATATTCTAGGCCTCGATCCTGCTTCGATTTACCTCTGGGGATGTTTCCCCTTTCAGC 599 |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 540 AACATATTCTAGGCCTCGATGCTGCTTCCATTTACCTCTGGGGATGTTTCCCCTTTCAGC 599 Query 600 TGGGTCTCAACTCCATCCCATCGCTCACCCATCTCGCCCCTTTGAGTATATTCGCCGATA 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 TGGGTCTCAACTCCATCCCATCGCTCACCCATCTCGCCCCTTTGAGTATATTCGCCGATA 659 Query 660 TCGTGGACGTAGCGGCCACCATAGTGGTTATGGTGCAGGATGTTTTCATCTTCCTGAAAC 719 ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 660 TCGTGGACGTAGCCGCCACCTTAGTGGTTATGGTGCAGGATGTTTTCATCTTCCTGAAAC 719 Query 720 GAAGACCTCCCTTGAGAGTCTTTGGAGGTGTCTCTGTTTTCTTCTACGGATTGGGAGTTG 779 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 GAAGACCTCCTTTGAGAGTCTTTGGAGGTGTCTCTGTTTTCTTCTACGGATTGGGAGTTG 779 Query 780 CTGTGTACGCATTTGAAGGGATCGGAATGGTTTTGCCACTGGAACTAGAGGCCAAATACA 839 | |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| Sbjct 780 CGGTGTACGCATTTGAAGGGATCGGAATGGTTCTGCCACTGGAACTAGAGGCTAAATACA 839 Query 840 AAGACAAGTTCGGTAGAGCGCTGGGGCTAGCCATGGGCTTAATCTCGATCATGTACGGTG 899 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 AAGACAAGTTCGGTAGAGCGCTGGGGCTAGCCATGGGCTTAATCTCGATCATGTACGGTG 899 Query 900 CGTTCGGCCTGCTAGGGTACATGGCTTACGGAGAGGAGACGAGAGACATTATCACCACCA 959 ||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct 900 CGTTCGGGCTGCTAGGGTACATGGCTTACGGAGAGGAGACGAAAGACATCATCACCACCA 959 Query 960 ACCTGGGGGCAGGAGTGGTGAGCACTCTGGTGCAGCTGGGCCTAGCAATCAACCTCTTCT 1019 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 960 ACCTGGGGACAGGAGTGGTGAGCACTCTGGTGCAGCTGGGCTTAGCAATCAACCTCTTCT 1019 Query 1020 TCACATTCCCCCTTATGATGCACCCCGTCTACGAGGTCGTGGAACGCCGCCTTTGCAGCT 1079 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 1020 TCACATTCCCCCTTATGATGCAACCTGTCTACGAGGTCGTGGAACGCCGCCTTTGCAGCT 1079 Query 1080 CCCGCTACTCCATATGGGTGCGCTGGGCCACTGTGCTGGTGGTCACTCTCGTGGCCCTGC 1139 |||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1080 CCCGTTACTCTGTATGGGTGCGCTGGGCCACTGTGCTGGTGGTCACGCTCGTGGCCCTGC 1139 Query 1140 TCGTCCCTAATTTTGCAGACTTCTTATCTCTGGTGGGGAGCAGCGTCTGCGTGGTGCTGG 1199 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 TCGTCCCAAATTTTGCAGACTTCTTATCTCTGGTGGGGAGCAGCGTCTGCGTGGTGCTGG 1199 Query 1200 GCTTTGTCTTGCCATCACTTTTTCACTTGCAGGCTTTCAAAAACGAGCTGAGCATCACAA 1259 ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 1200 GCTTTGTCTTGCCATCACTATTTCACTTGCAGGCTTTCAAAAACGAGTTGAGCATCACAA 1259 Query 1260 GAATAGTGGTAGACGTTCTCGTTTTCCTCATTGGTGTTATTATAGCCATTACCGGGACTT 1319 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 1260 GAATAGTGGTAGACGTTCTCGTTTTCCTCATTGGTGTTATGATAGCCATTACCGGGACCT 1319 Query 1320 GGACGGCCGTACACGAGATCCTGTCATCCAAGGCCTGATTGATATTCTTCCATTGTTTAT 1379 |||| || ||||| ||||||||| |||||||||||||| | | | |||||||||||||| Sbjct 1320 GGACTGCAGTACATGAGATCCTGACATCCAAGGCCTGA--GCT-T-CTTCCATTGTTTAT 1375 Query 1380 TTTTGTCAGTATGAAAAGAGAAGCATAGTTACCTACAGCGAACACGGCAGCATTATTGTT 1439 |||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| Sbjct 1376 TTTTGTCAGTATGAAAAGAGAAGCATTGTTACCTCCAGCGAACACGGCATTATTATTGTT 1435 Query 1440 ATTCTGTTACTCTCCTCACTTGTTTATTTGTGTCTTATTACTCTATTTGTAAGAAAGAC- 1498 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1436 ATTCTGTTACTCTCCTCACTTGTTTATTTGAGTCTTATTACTCTATTTGTAAGAAAGACG 1495 Query 1499 C-C-ATG-AAAACCAATAAGAAAAATACGCTTAGAATCAAGTGTGATAAA 1545 | | ||| |||||||||||||||||||| ||||||||||||| ||||||| Sbjct 1496 CACCATGGAAAACCAATAAGAAAAATACTCTTAGAATCAAGTTTGATAAA 1545 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76254627855 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5