BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497027
Length=1782
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65970.1 | Symbols: MLO10, ATMLO10 | Seven transmembrane MLO... 2892 0.0
> AT5G65970.1 | Symbols: MLO10, ATMLO10 | Seven transmembrane MLO
family protein | chr5:26387428-26390452 REVERSE LENGTH=1836
Length=1836
Score = 2892 bits (1566), Expect = 0.0
Identities = 1714/1786 (96%), Gaps = 7/1786 (0%)
Strand=Plus/Plus
Query 1 ACGTAATCAAGGACCAAGGGATTTTATTC-TTTGGCTGCCATGGCCACAAGATGCTTTTG 59
||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||
Sbjct 6 ACGTAATCAAGGACCAAGGGATTTTCTTCTTTTGGCTACCATGGCCACAAGATGCTTTTG 65
Query 60 GTGTTGGACCACTTTGCTCTTCTTCTCTCAGCTGCTTACCGGCTGCGCCCGAGCTTCCTC 119
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 66 GTGTTGGACCACTTTGCTCTTCTGCTCTCAGCTGCTTACCGGCTTTGCCCGAGCTTCCTC 125
Query 120 TGCGGGC-GCTGGCAAAGAGAAAGGACTCTCCCAAACTCCCACCTGGGCCGTTGCCCTCG 178
||| ||| || | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 TGCAGGCGGC-GCCAAAGAGAAAGGACTCTCCCAAACTCCCACCTGGGCCGTTGCCCTCG 184
Query 179 TCTGTACCTTCTTCATCCTTGTCTCCGTCCTCCTCGAGAAGGCTCTTCACAGAGTTGCCA 238
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 TCTGTACCTTCTTCATTCTTGTCTCCGTCCTCCTCGAGAAGGCTCTTCACAGAGTTGCCA 244
Query 239 CGTGGTTGTGGGAGAAACATAAGAACTCTCTGCTTGAAGCCTTGGAAAAAATAAAGGCCG 298
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 245 CGTGGTTGTGGGAGAAACATAAGAACTCTCTGCTTGAAGCCTTGGAGAAAATAAAGGCGG 304
Query 299 AGCTGATGATTCTAGGATTCATTTCATTGTTGCTCACCTTCGGAGAGCAGTACATTCTCA 358
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 305 AGCTGATGATTCTAGGATTCATTTCCTTGTTGCTCACCTTCGGAGAGCAGTACATTCTCA 364
Query 359 AGATTTGTATTCCTGAAAAGGCTGCAGCCTCTATGTTACCTTGTCCAGCTCCTTCTACTC 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 AGATTTGTATTCCTGAAAAGGCTGCAGCCTCTATGTTACCTTGTCCAGCTCCTTCTACTC 424
Query 419 ATGACCAAGACAAGACCCACCGCAGACGTCTAGCTGCTGCTACTACCTCTTCCCGCTGCG 478
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 425 ATGACCAAGACAAGACCCACCGCAGACGTCTAGCTGCTGCTACGACCTCTTCCCGCTGCG 484
Query 479 ATGAGGGTCATGAACCACTCATACCTGCCACGGGTTTGCACCAGCTACACATTCTATTGT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 ATGAGGGTCATGAACCACTCATACCTGCCACGGGTTTGCACCAGCTACACATTCTATTGT 544
Query 539 TCTTCATGGCTGCCTTTCATATCCTCTACAGTTTCATCACCATGATGCTTGGCAGACTCA 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 TCTTCATGGCTGCCTTTCATATCCTCTACAGTTTCATCACCATGATGCTTGGCAGACTCA 604
Query 599 AGATCCGTGGCTGGAAAAAGTGGGAGCAGGAGACATGTTCTCATGATTACGAGTTTTCAA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 AGATCCGTGGCTGGAAAAAGTGGGAGCAGGAGACATGTTCTCATGATTACGAGTTTTCAA 664
Query 659 TCGATCCATCAAGATTCAGGCTCACTCATGAGACGTCCTTCGTCAGACAACATTCCAGTT 718
||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 665 TCGATCCATCAAGATTCAGACTCACTCATGAGACGTCCTTTGTTAGACAACATTCCAGTT 724
Query 719 TCTGGACAAAAATCCCCTTCTTCTTTTATGCTGTGTGCTTCCTACAGCAGTTTTTCCGAT 778
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 725 TCTGGACAAAAATCCCCTTCTTCTTTTATGCTGGGTGCTTCCTACAGCAGTTTTTCCGAT 784
Query 779 CTGTCGGGAAGACCGACTACTTAACTCTGCGCCATGGCTTCATCGATGCCCATTTAGCTC 838
|||| |||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 785 CTGTAGGGAGGACTGACTACTTAACTCTGCGCCATGGCTTCATCGCTGCCCATTTAGCTC 844
Query 839 CGGGAAGAAAGTTCGACTTCCAGAAGTATATCAAAAGATCTTTGGAAGACGATTTCAAGG 898
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 845 CAGGAAGAAAGTTCGACTTCCAGAAGTATATCAAAAGATCATTGGAAGACGATTTCAAGG 904
Query 899 TGGTAGTTGGAATAAGTCCTCTTCTGTGGGCATCATTTGTAATTTTCCTACTTCTGAATG 958
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 905 TGGTAGTTGGAATAAGTCCTCTTTTGTGGGCATCATTTGTAATTTTCCTACTTCTGAATG 964
Query 959 TTAATGGCTGGGAAACATTGTTTTGGGCGTCAATCCTGCCTGTACTTATTATTTTAGCTG 1018
|||||||||||||| |||||||||||||||||||||| ||||||||||| ||| ||||||
Sbjct 965 TTAATGGCTGGGAAGCATTGTTTTGGGCGTCAATCCTACCTGTACTTATCATTCTAGCTG 1024
Query 1019 TCAGTACGAAGCTTCAAGCTATCCTAACAAGAATGGCTCTGGGAATCACAGAGAGACACG 1078
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1025 TCAGTACGAAGCTTCAAGCGATCCTAACAAGAATGGCTCTGGGAATCACGGAGAGACACG 1084
Query 1079 CAGTTGTTCAAGGGATACCTCTTGTGCATGGTTCAGATAAGTACTTTTGGTTTAATCGCC 1138
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1085 CAGTTGTTCAAGGGATACCTCTCGTGCATGGTTCAGATAAGTACTTTTGGTTTAATCGCC 1144
Query 1139 CTCAGTTGCTGCTTCATCTTCTTCACTTCGCCTTATTTCAGAATGCTTTCCAGCTAACAT 1198
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 CTCAGTTGCTACTTCATCTTCTTCACTTCGCCTTATTTCAGAATGCTTTCCAGCTAACAT 1204
Query 1199 ACTTCTTCTGGGTCTGGTATTCCTTTGGGCTAAAATCTTGTTTTCATACGGATTTCAAAC 1258
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1205 ACTTCTTCTGGGTCTGGTATTCCTTTGGGCTAAAATCTTGCTTTCACACGGATTTCAAAC 1264
Query 1259 TTGTCATCGTAAAACTATCTCTAGGCGTTGGAGCTTTGATTTTGTGCAGCTACATCACGC 1318
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1265 TAGTCATCGTAAAACTCTCTCTAGGCGTTGGAGCTTTGATTTTGTGCAGCTACATCACAC 1324
Query 1319 TTCCTTTGTATCCACTAGTTACCCAGATGGGCTCACACATGAAGAAAGCTGTGTTTGATG 1378
||||||||||| |||||||||| |||||||| ||| ||||||||||||||||||||||||
Sbjct 1325 TTCCTTTGTATGCACTAGTTACTCAGATGGGTTCAAACATGAAGAAAGCTGTGTTTGATG 1384
Query 1379 AGCAAATGGCAAAAGCGTTGAAGAAATGGCACATGACTGCAAAGAAGAAGAAAGGCAAAG 1438
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1385 AGCAAATGGCAAAAGCGTTGAAGAAATGGCACATGACTGTGAAGAAGAAGAAAGGCAAAG 1444
Query 1439 CGAGAAAGCCACCAACAGAGACCCTTGGTGGTTCTGACAGTGTCAGCACCTCTACCTCAG 1498
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1445 CGAGAAAGCCACCAACAGAGACCCTTGGTGTTTCTGACACTGTCAGCACCTCTACCTCAT 1504
Query 1499 CATTTCACGCCTCTGGAGCCACTCTACTACGCTCCAAGACCACCGGTCACTCGACAGCCT 1558
| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1505 CCTTTCACGCCTCTGGAGCCACTCTACTCCGCTCCAAGACCACTGGTCACTCGACAGCCT 1564
Query 1559 CTTACATGAGTAACTTT-GAGGACCAAAGTATGTCTGATCTTGAGGCTGAGCGATTAACT 1617
|||| |||||||| ||| ||||||||||| |||||||||||||| ||||||| |||| |
Sbjct 1565 CTTATATGAGTAA-TTTCGAGGACCAAAGCATGTCTGATCTTGAAGCTGAGCCATTATCC 1623
Query 1618 CCTGTGCCAATAGAGGGGCACACTATCGTCAGGGTTGGTGATCAGCCCACAGAGATGGAA 1677
|||| |||||||||||||||||| |||||||||||||||||||| ||||||||| |||
Sbjct 1624 CCTGAACCAATAGAGGGGCACACTCTCGTCAGGGTTGGTGATCAGAACACAGAGATAGAA 1683
Query 1678 TATACTGGAGTTATTAGTCCTGGAAACCAATTCTCCTTTGTGAAGC-CTGTTCCTGCTAA 1736
|||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1684 TATACTGGAGATATTAGTCCTGGAAACCAATTCTCCTTTGTGAAGAAC-GTTCCTGCTAA 1742
Query 1737 TGATATTGATTAGTGTTCAAAATGAATGCAGAACAAATCCATCATC 1782
||||||||| || | |||||||||||||||||||||||||||||||
Sbjct 1743 TGATATTGACTAATATTCAAAATGAATGCAGAACAAATCCATCATC 1788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88152157020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5