BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg497050 Length=1749 Score E Sequences producing significant alignments: (Bits) Value AT4G13345.1 | Symbols: MEE55 | Serinc-domain containing serine ... 2237 0.0 AT3G24460.1 | Symbols: | Serinc-domain containing serine and s... 1055 0.0 > AT4G13345.1 | Symbols: MEE55 | Serinc-domain containing serine and sphingolipid biosynthesis protein | chr4:7765073-7769688 FORWARD LENGTH=1995 Length=1995 Score = 2237 bits (1211), Expect = 0.0 Identities = 1412/1505 (94%), Gaps = 30/1505 (2%) Strand=Plus/Plus Query 269 TATTATTTGCCAAGGATC----TATGATCTTCCAATGTCATGAAGAAGGGAGAGTTTGCT 324 |||| ||||||||||||| |||||||||||||||||||||||||| |||||| |||| Sbjct 475 TATTTTTTGCCAAGGATCTATATATGATCTTCCAATGTCATGAAGAAGAGAGAGTCTGCT 534 Query 325 AAG-TTTAAAGACTTATGGAGACCGGTACAAGCATTGACAAGAATGGCTATGAAGGAATA 383 || ||||| |||||||||| |||||||||||||||||||| | ||||||||||||||| Sbjct 535 -AGATTTAAGGACTTATGGAAACCGGTACAAGCATTGACAACACTGGCTATGAAGGAATC 593 Query 384 AAGAACGGTTCGTGGTTTAGCCAGTTTCGTAATGGCTGCAATCCATGGATGGCTAGATAT 443 ||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 594 AAGAACGGTTCATGGTTTATCCAGTTCCGTAATGGCTGCAATCCATGGATGGCTAGATAT 653 Query 444 GTGTACGGTCTGATATTCCTCTTGGCAAATTTG-TTGGCTTGGGCCTTGCGCGATTATGG 502 ||||||||||| |||||||||||||||||| || || |||||||||||||| |||||||| Sbjct 654 GTGTACGGTCTAATATTCCTCTTGGCAAATCTGCTT-GCTTGGGCCTTGCGTGATTATGG 712 Query 503 CCGAGGTGCCTTGACCGAGATGAGAAAATTCAAGAATTGTAAAGAAGGTGGAGAGTGTTT 562 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 713 CCGAGGCGCCTTGACCGAAATGAGAAAATTCAAGAATTGTAAAGAAGGTGGAGACTGTTT 772 Query 563 GGGGACGGAAGGAGTTTTACGAGTAAGCTTGGGATGTTTTTTGTTCTATTTCATTATGTT 622 ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 773 AGGGACGGAAGGAGTTTTACGAGTTAGCTTCGGATGTTTTTTGTTCTATTTCATTATGTT 832 Query 623 TCTTTCAACCGTTGGCACATCAAAGACGAATTCATCGAGAGATAAATGGCATTCAGGATG 682 ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct 833 TCTTTCAACCGTTGGGACATCAAAGACGCATTCATCGAGAGATAAATGGCATTCAGGATG 892 Query 683 GTGGTTTGCTAAGCTTTTCATGTGGCTTGGCTTAACCATCTTCCCCTTTTTGTTGCCTTC 742 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 893 GTGGTTTGCTAAGCTTTTCATGTTGCTTGGCTTAACCATCTTCCCCTTTTTGTTGCCTTC 952 Query 743 TTCCATTATTCAGCTTTACGGGGAGATTGCCCATTTTGGTGCAGGGGTATTTCTCCTAAT 802 ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 953 TTCCATTATTCAGTTTTACGGGGAGATTGCCCATTTTGGTGCAGGGGTCTTTCTCCTAAT 1012 Query 803 TCAGCTCATTAGTATCATTAGTTTCATTACATGGCTCAATGAATGCTTCCAAGCACAAAA 862 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1013 TCAGCTGATTAGTATCATTAGTTTCATTACATGGCTCAATGAATGTTTCCAAGCACAAAA 1072 Query 863 AGATGCAGAAAGATGCCATGTCCATGTGATGCTACTAGCGACTACTGCGTACACCGTATG 922 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 1073 AGATGCAGAAAGATGCCATGTCCATGTAATGCTACTAGCGACTACTGCGTACACCGTGTG 1132 Query 923 CATATTAGGGGTTATTTTGATGTACATTTGGTATGTGCCTGATCCATCATGCCTTCTCAA 982 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1133 CATATTAGGGGTTATTTTGATGTACATTTGGTATGTGCCTGAACCATCATGCCTTCTCAA 1192 Query 983 CATATTTTTCATCACATGGACTTTGTTCCTCATCCAACTCATGACAAGTATCTCTCTCCA 1042 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1193 CATATTTTTCATCACATGGACTTTGTTCCTCATCCAACTCATGACAAGTATCTCTCTCCA 1252 Query 1043 CCCCAAAATAAATGCTGGATTCTTGACTCCAGCACTTATGGGGCTTTATGTTGTGTTTAT 1102 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 1253 CCCCAAAATAAATGCTGGATTCTTGACTCCAGCGCTTATGGGGCTTTACGTTGTGTTTAT 1312 Query 1103 CTGCTGGTGCGCCATTCGAAGTGAGCCAGTAGGAGAAACTTGCAATC-GAAAAGCCGAAG 1161 ||||||||||||||||||||||||||| ||||||||||||||||| | ||||||| |||| Sbjct 1313 CTGCTGGTGCGCCATTCGAAGTGAGCCTGTAGGAGAAACTTGCAA-CAGAAAAGCAGAAG 1371 Query 1162 GTTCTAGCAGAACAGACTGGCTTACCATCATAAGCTTTGTTGTTGCACTGGTTGCAATGG 1221 ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1372 GTTCTAGTAGAACAGACTGGCTTACCATCATAAGCTTTGTTGTTGCACTGCTTGCAATGG 1431 Query 1222 TAATTGCGACATTCTCCACGGGCGTAGATTCCCAATGTTTCCAGTTTAGAAAAGATGAGA 1281 |||| ||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||| Sbjct 1432 TAATAGCGACATTCTCGACGGGAGTAGATTCACAATGTTTTCAGTTTAGAAAAGATGAGA 1491 Query 1282 ATCATGAGGAAGATGCAATTCCTTACGGATATGGATTCTTCCATTTTGTGTTTGCTACCG 1341 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | Sbjct 1492 ATCATGAGGAAGATGCAATTCCTTACGGATACGGATTCTTTCATTTTGTGTTTGCTACTG 1551 Query 1342 GAGCAATGTACTTTGCGATGCTACTTGTTGGCTGGAACATTCATCATTCCATGAAAAAGT 1401 |||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||| Sbjct 1552 GAGCAATGTACTTTGCAATGCTACTTGTTGGTTGGAACATTCACCATTCCATGAAAAAGT 1611 Query 1402 GGACCATTGACGTTGGGTGGACAAGTACTTGGGTAAGGATAGTGAACGAATGGCTCGCGG 1461 |||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 1612 GGACGATTGACGTTGGGTGGACAAGTACTTGGGTAAGGATTGTAAACGAATGGCTCGCGG 1671 Query 1462 TTGGCGTTTATATTTGGATGTTGGTGGCTCCAATGGTACTGAAAAGTAGACAAACAACAT 1521 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1672 TTGGCGTTTACATTTGGATGTTGGTGGCTCCAATGGTACTGAAAAGTAGACAAACAACAT 1731 Query 1522 GAGAGATCACTACAGAGAGATTTTT-TCA--TCTCGGT--AT-T--G--T-G-G-ATCTT 1568 |||||||||| |||||||||||||| ||| |||| | || | | | | | ||||| Sbjct 1732 GAGAGATCACCACAGAGAGATTTTTGTCACCTCTCAATTCATCTCCGCATTGTGGATCTT 1791 Query 1569 GTCGAAAAATAGAATAGAAGATT-AAGATTG-GATAACTGTGTGAAATCA-TCATATATT 1625 ||||||||||||||||||||||| ||||||| | ||||||||||||||| | ||||||| Sbjct 1792 GTCGAAAAATAGAATAGAAGATTTAAGATTGAGG-AACTGTGTGAAATCAAT-ATATATT 1849 Query 1626 TGTACTTAGATTCTTTAGGATCAAAGAAAGATGGATACAAATATAGCTATAGATTAGTAA 1685 |||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 1850 TGTACTTAGATTGTTTAGGATCAAAGAAAGATGGATACAAATATAGCTATACACTAGTAA 1909 Query 1686 TACTGACCCTAATAGGGT-CTCTATTCATGAAGCGTGTACACGTTATTACACATACATCT 1744 ||||| |||||| || || ||||| ||||||||||||||||| |||| |||||||||||| Sbjct 1910 TACTGTCCCTAA-AGAGTTCTCTAATCATGAAGCGTGTACACATTATAACACATACATCT 1968 Query 1745 CTCTA 1749 ||||| Sbjct 1969 CTCTA 1973 Score = 359 bits (194), Expect = 6e-98 Identities = 243/265 (92%), Gaps = 9/265 (3%) Strand=Plus/Plus Query 1 AAGAAAGAAAGTG-TTTAAAA-AGAGCAAAACTCAGAAGAAACAACAAAACCTGAAATCA 58 ||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 7 AAGAAAGAAAGTGTTTTAAAAGAGAGC-AAACTCAGAAGAAACAACAAAACCTGAAATCA 65 Query 59 TTAATTTTCTTCTTTTTCACAATTTCCTCTCAGATCTTTTTTGGGGTTTCTCATTTGTAA 118 || ||||||||||| |||||||||| ||||| |||| ||||| ||||||||||||| ||| Sbjct 66 TTCATTTTCTTCTTCTTCACAATTTTCTCTCTGATCGTTTTT-GGGTTTCTCATTTATAA 124 Query 119 GTAAAACCTCTAATAAGAAACATTTTTCACATCTCCAGATCTGATCTTGAGCTTTTGCAC 178 ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct 125 GTAAAACCTCTAATAAGAAACATTTTTCACATCACCAGATCCGATCTTGAGCTTTTGCAC 184 Query 179 CAGCaaaaaaaaaaCAAGTTCTTTGTTCT---GAAGGAAGACAAGTAAAGGCTTCTGGAG 235 |||||||||||||||| |||||||||||| |||||||||||| |||| ||| |||||| Sbjct 185 CAGCAAAAAAAAAACAGGTTCTTTGTTCTACTGAAGGAAGACAACTAAACGCTACTGGAG 244 Query 236 T--CTTTCTTGTGTTTAGTCTGGTC 258 | ||||||||||||||||| |||| Sbjct 245 TGTCTTTCTTGTGTTTAGTCCGGTC 269 > AT3G24460.1 | Symbols: | Serinc-domain containing serine and sphingolipid biosynthesis protein | chr3:8885818-8893050 REVERSE LENGTH=1976 Length=1976 Score = 1055 bits (571), Expect = 0.0 Identities = 965/1151 (84%), Gaps = 44/1151 (4%) Strand=Plus/Plus Query 370 GCTATGAAGGAATAAAGAACGGTTCGTGGTTTAGCCAGTTTCGTAATGGCTGCAATCCAT 429 ||||||||| ||| ||||| || || ||||||| ||||| || || ||||||||||| | Sbjct 457 GCTATGAAGCAATCAAGAATGGATCATGGTTTAATCAGTTCCGCAACGGCTGCAATCCCT 516 Query 430 GGATGGCTAGATATGTGTACGGTCTGATATTCCTC-TTGGCAAATTTGTTGGCTTGGGCC 488 |||||||||||||||| |||||||||||||||||| || || ||| | | ||||||| | Sbjct 517 GGATGGCTAGATATGTATACGGTCTGATATTCCTCATT-GCGAATCTACTAGCTTGGG-C 574 Query 489 TTG--CGCGATTATGGCCGAGGTGCCTTGACCG-AGA-TGAGAAAATTCAAGAATTGTAA 544 || || |||||||| || |||||||| | | | | ||| || ||||||||| ||||| Sbjct 575 -TGCTCGTGATTATGGTCGGGGTGCCTT-A-AGAAAAGTGACAAGATTCAAGAACTGTAA 631 Query 545 AGAAGGTGGAGAGTGTTTGGGGACGGAAGGAGTTTTACGAGTAAGCTTGGGATGTTTTTT 604 || || | | | ||||||||||| || || || ||| |||| ||||||||||||||||| Sbjct 632 AGGTGGCGAAAACTGTTTGGGGACCGACGGTGTCTTAAGAGTTAGCTTGGGATGTTTTTT 691 Query 605 GTTCTA-TTTCATTATGTTTCTTTCAAC-CGTTGGCACATC-AAAGACGAATTCATCGAG 661 |||||| ||| |||||||||||||||| | |||| || || ||| ||| ||||||| || Sbjct 692 GTTCTACTTT-GTTATGTTTCTTTCAACAC-TTGGTACGTCGAAA-ACGCATTCATCAAG 748 Query 662 AGATAAATGGCATTCAGGATGGTGGTTTGCTAAGCTTTTCATGTGGCTTGGCTTAACCAT 721 ||||| ||||||||| ||||||||||||| |||||| ||||||||| || ||||||||| Sbjct 749 AGATAGATGGCATTCTGGATGGTGGTTTGTTAAGCTCATCATGTGGCCTGCCTTAACCAT 808 Query 722 C-TTCCCCTTTTTG-TTGCCTTCTTCCATTATTCAGCTTTACGGGGAGATTGCCCATTTT 779 | || ||||| ||| || ||||||||||||||||| |||||||| ||||||||||||||| Sbjct 809 CATT-CCCTTCTTGCTT-CCTTCTTCCATTATTCACCTTTACGGAGAGATTGCCCATTTT 866 Query 780 GGTGCAGGGGTATTTCTCCTAATTCAGCTCATTAGTATCATTAGTTTCATTAC-ATGGCT 838 |||||||||||||||||| |||| ||||| |||||| | || ||||||||| | |||||| Sbjct 867 GGTGCAGGGGTATTTCTCTTAATACAGCTAATTAGTGTGATCAGTTTCATT-CAATGGCT 925 Query 839 CAATGAATGCT-TCCAAG-CACAAAAAGATGCAGAAAGATGCCATGTCCATGTGATGCTA 896 ||| ||||||| | | || | |||||||||||||||||||||| |||| |||||||| || Sbjct 926 CAACGAATGCTAT-C-AGTCCCAAAAAGATGCAGAAAGATGCCGTGTCTATGTGATGTTA 983 Query 897 CTAGCGACTACTGCGTACACCGTATGCATATTAGGGGTTATTTTGATGTACATTTGGTAT 956 ||| | |||||| | ||||| || |||||| |||| || |||||||||||||||||||| Sbjct 984 CTATCAACTACTTCATACACAGTTTGCATAGTAGGAGTGATTTTGATGTACATTTGGTAC 1043 Query 957 GTGCCTGATCCATCATGCCTTCTCAACATATT-TTTCATCACATGGACTTTGTTCCTCAT 1015 | ||||||| | ||||| |||||||| ||||| ||| || |||||||||||||||||||| Sbjct 1044 GCGCCTGATTCTTCATGTCTTCTCAATATATTCTTT-ATAACATGGACTTTGTTCCTCAT 1102 Query 1016 CCAACTCATGACAAGTATCTCTCTCCACCCCAAAATAAATGCTGGATTCTTGACTCCAGC 1075 ||||||||||||||| ||| ||||||| || ||| | |||||||||| |||||||||||| Sbjct 1103 CCAACTCATGACAAGCATCGCTCTCCATCCTAAAGTTAATGCTGGATACTTGACTCCAGC 1162 Query 1076 ACTTATGGGGCTTTATGTTGTGTTTATCTGCTGGTGCGCCATTCGAAGTGAGCCAGTAGG 1135 |||||||| || |||||||||||||| |||||||| |||||||||||||| ||||| || Sbjct 1163 TCTTATGGGACTCTATGTTGTGTTTATATGCTGGTGTGCCATTCGAAGTGAACCAGTGGG 1222 Query 1136 AGAAACTTGCAATCGAAAAGCCGAAGGTTCTAGCAGAACAGACTGGCTTACCATCATAAG 1195 |||| ||| ||| ||||||| | || ||| | |||||||||||||||||||||||| || Sbjct 1223 CGAAAGTTGTAATAGAAAAGCAGCAGCTTCAAACAGAACAGACTGGCTTACCATCATTAG 1282 Query 1196 CTTTGTTGTTGCACTGGTTGCAATGGTAATTGCGACATTCTCCACGGGCGTAGATTCCCA 1255 |||||| ||||| || |||| ||||| || |||||||| || || || |||| ||||| Sbjct 1283 CTTTGTGGTTGCGCTACTTGCGATGGTTATCGCGACATTTTCGACAGGAATAGACTCCCA 1342 Query 1256 ATGTTTCCAGTTTA-GAAAAGATGAGAA---TCATGAGGAAGATGC--AA--T--T---C 1302 ||||||||| |||| |||| |||||||| ||| || ||||| || || | | | Sbjct 1343 ATGTTTCCAATTTAAGAAA-GATGAGAACGATCAAGAAGAAGAAGCTGAAGATGATGTTC 1401 Query 1303 CTTACGGATATGGATTCTTCCATTTTGTGTTTGCTACCGGAGCAATGTACTTTGCGATGC 1362 | || || ||||||||||| |||||||||||||| || |||||||||||||| || |||| Sbjct 1402 CATATGGCTATGGATTCTTTCATTTTGTGTTTGCCACAGGAGCAATGTACTTCGCTATGC 1461 Query 1363 TACTTGTTGGCTGGAACATTCATCATTCCATGAAAAAGTGGACCATTGACGTTGGG-TGG 1421 |||| | || ||||||| ||||||| |||||||||||||||| |||||||| ||| ||| Sbjct 1462 TACTCATCGGTTGGAACACTCATCATCCCATGAAAAAGTGGACGATTGACGT-GGGATGG 1520 Query 1422 ACAAGTACTTGGGTAAGGATAGTGAACGAATGGCTCGCGGTTGGCGTTTATATTTGGATG 1481 |||||||||||||||||| | |||||||| ||||| |||||| |||| || ||||||||| Sbjct 1521 ACAAGTACTTGGGTAAGGGTTGTGAACGAGTGGCTTGCGGTTTGCGTATACATTTGGATG 1580 Query 1482 TTGGTGGCTCC 1492 ||||||||||| Sbjct 1581 TTGGTGGCTCC 1591 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86495539035 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5