BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497223
Length=675
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51510.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 1007 0.0
> AT5G51510.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF1352 (InterPro:IPR009787);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr5:20921433-20922978 FORWARD LENGTH=752
Length=752
Score = 1007 bits (545), Expect = 0.0
Identities = 636/679 (94%), Gaps = 9/679 (1%)
Strand=Plus/Plus
Query 1 CTCTTTCAATCTCCGATCAAATCCAAACGCATTCTTCCGATTTCGCCGGAGAAGATGCAG 60
|||||||||||||||||||||| ||||||||| ||||| |||||||||| ||||||||||
Sbjct 26 CTCTTTCAATCTCCGATCAAATACAAACGCATACTTCCAATTTCGCCGGCGAAGATGCAG 85
Query 61 CAGAGAAAGCCGACGGCGGGTAGACCCAGTGGTACCGATGGATCCGATTTCTCATACCGC 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 86 CAGAGGAAGCCGACGGCGGGTAGACCCAGTGGTACCGATGGATCCGATTTCTCATACCGC 145
Query 121 ATGGTCGTTGACTCTCGTTACACGAAGGTCACTAAAGAAAAAGCTCGTCTCCGTCCTTTG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 146 ATGGTCGTTGACTCTCGTTACACGAAGGTCACTAAAGAAAAAGCTCGTCTCCGTCCTTTG 205
Query 181 ATCTTTGTTCAGGCTGCGATTTATTTAGTCGGATTATCGTGTGCGTTTCTGACAACGACT 240
|||||||||||||||||||||||| || |||||||||||||||||||||| ||||| |||
Sbjct 206 ATCTTTGTTCAGGCTGCGATTTATGTAATCGGATTATCGTGTGCGTTTCTAACAACAACT 265
Query 241 AAAAAGGATGAGAGGAACACCCTTGCAATTGCAGCAGCTGCTGCTGGCTTAGTGTCTTCA 300
||||||||||||| |||||||||||| |||||||| |||| |||||||||||||| ||||
Sbjct 266 AAAAAGGATGAGAAGAACACCCTTGCTATTGCAGCTGCTGTTGCTGGCTTAGTGTGTTCA 325
Query 301 TTCATAGGAGAATTAGGTTGTAGACGCAGCAGAGTAAACCTTTTGAGGCTCTATACGGCT 360
|| ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 326 TTGATAGGAGAATTAGGTTGCAGACGTAGCAGAGTAAACCTTTTGAGGCTCTACACGGCT 385
Query 361 GCATCTACCATTGTTATGGTTCTTTCAGTGTTTTGTGCTGTTAGGAGCAGATTAACTATG 420
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 386 GCATCAACCATTGTTATGGTTCTTTCTGTGTTTTGTGCTGTTAGGAGCAGATTAACCATG 445
Query 421 GAGGAACGGAATAGCACTGGAACAACCGCGAAGCTTGAGCTCGCAGGTTTCATTTGTGCT 480
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 GAGGAACGCAATAGCTCTGGAACAACCGCGAAGCTTGAGCTCGCAGGTTTCATTTGTGCT 505
Query 481 CAATTTGGAGCGGTGGTGCAGATATTAGTGATCATCGTTACGGGGTCCCTTGTCAATAAT 540
||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 506 CAATTAGGAGCGGTGGTGCAGATATTAGCGATCATCGTTACAGGGTCCCTTGTCAATAAT 565
Query 541 ATGTCTCCGCCTACAAAAGCAGCATAGAGGAACATAAAACTTGGGCACTGTCGTGTGTGC 600
|||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 566 ATGTCTCCACCTACGAAAGCAGCATAGAGGAACATAAAATTTGGGCACTGTCGTGTGTGC 625
Query 601 TTCTCTTACATGAAGAAGAAAACTTAG-AATTTGTAAGTTTTGAACCGTTGTT-TTCTC- 657
|||||||| |||||||| ||||| ||||||||| ||||||||| || || |||||
Sbjct 626 TTCTCTTAAATGAAGAA-----CTTAGGAATTTGTAATTTTTGAACCATTTTTGTTCTCT 680
Query 658 C-ACCAAATGATTAGTGTT 675
| ||||| |||||||||||
Sbjct 681 CCACCAAGTGATTAGTGTT 699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32652195550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5