BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497327
Length=1395
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53050.2 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2026 0.0
AT5G53048.1 | Symbols: | other RNA | chr5:21509861-21511850 FO... 254 2e-66
> AT5G53050.2 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:21510129-21513576 REVERSE LENGTH=1661
Length=1661
Score = 2026 bits (1097), Expect = 0.0
Identities = 1284/1374 (93%), Gaps = 14/1374 (1%)
Strand=Plus/Plus
Query 33 CGATGCCGTTTTGCGAGGTCGTGAAAGAAGACGTCGGCCCAGAGACGACTCTTAACAATG 92
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 143 CGATGCCGTTTTGCGAGGTCGTGAAAGAAGATGTCGGCCCAGAGACGACGCTTAACAATG 202
Query 93 CCGCAATCAAACTCTTCTACAGAACGTACGGTCACGGTCCTATCAAAGCTCTTCTCATCA 152
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 203 CCGCAATCAAAATCTTCTACAGAACGTACGGTCATGGTCCTATCAAAGCTCTTCTCATCA 262
Query 153 TAGGTTTAGCCGGAACCCATGAATCCTGGGGTCCTCAAATCATGGGATTGACGGGGACGG 212
|||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 263 TAGGTTTAGCCGGAACCCATGAGTCATGGGGTCCTCAAATCATGGGATTGACGGGAACGG 322
Query 213 ATAAACCCAACGAC---G-T-----CGACGGAGGAATCGTTTCCGATGATTCAGGCATCG 263
|||||||||||||| | | |||||||||||| |||||||||||||| |||||||
Sbjct 323 ATAAACCCAACGACGATGATGACGACGACGGAGGAATTGTTTCCGATGATTCCGGCATCG 382
Query 264 AGGTCTGTGCTTTTGACAATCGTGGTATGGGTCGGAGCTCTATACCTACCCACAAATCTG 323
|||| || ||||| || ||||||||||||||||| |||||| | ||||||||||||||||
Sbjct 383 AGGTTTGCGCTTTCGATAATCGTGGTATGGGTCGAAGCTCTGTGCCTACCCACAAATCTG 442
Query 324 AGTACTCAACAACGATAATGGCAAATGATTCAATTAATTTGTTAGATCATTTGGGTTGGA 383
||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 443 AGTACACAACAACGATAATGGCAAATGATTCAATTAGTTTGTTGGATCATTTGGGTTGGA 502
Query 384 AGAGAGCTCACATAATTGGCCATTCTATGGGAGCTATGATAGCTTGCAAGTTAGCTGCAA 443
||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 503 AGAAAGCTCACATAATTGGTCATTCTATGGGAGCAATGATAGCTTGCAAGTTAGCTGCAA 562
Query 444 TGGTGCCCGAACGGGTTCTTTCGTTGGCGTTGCTTAACGTTACAGGTGGAGGGTTCGAAT 503
||| ||| |||||||||||||| |||||||||||||| |||||||||||||| || ||||
Sbjct 563 TGGCGCCTGAACGGGTTCTTTCTTTGGCGTTGCTTAATGTTACAGGTGGAGGTTTTGAAT 622
Query 504 GTTTCCCGAAGCTTGACCGGCAATCGCTTTCCATTGCGATACGTTTTCTGAAGGCAAAGA 563
| ||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 623 GCTTCCCTAAGCTTGACCGGAAATCGCTTTCCATTGCGATACGTTTTCTGAAAGCAAAGA 682
Query 564 CCCCTGAACAAAGGGCAGCTGTTGATTTGGACACACATTATTCAAAGGATTACTTAGAAG 623
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 683 CCCCTGAACAAAGGGCAGCTGTTGATTTGGACACACATTATTCAAAGGATTACCTAGAAG 742
Query 624 AATCTGTAGGAACTAACACAAGACGGGCAATTTTATATCAGCAATATGTGAAAGGAATAT 683
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 743 AATCTGTAGGAACTAATACAAGACGGGCAATTTTATATCAGCAATATGTAAAAGGAATAT 802
Query 684 CAGAAACTGGAATGCAGTCCAAGTACGGGTTTGATGGCCAAATTAACACTTGTTGGTTAC 743
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 803 CAGAAACTGGAATGCAGTCCAAGTACGGGTTTGATGGCCAAATTAACGCTTGTTGGTTAC 862
Query 744 ACAAAATCACAAAACCAGAGATCGTAGTAATCCGCTCGGCTGGGTTTCTTGTCTCAGTCA 803
|||||||||||||| |||||| | | |||||||||||||||| ||||||||||||||||
Sbjct 863 ACAAAATCACAAAAGTAGAGATTGAACTAATCCGCTCGGCTGGATTTCTTGTCTCAGTCA 922
Query 804 TTCATGGAAGACATGATGTGATTGCTCAGATATGTTACGCAAGAAGACTGGCACAGAGGC 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 TTCATGGAAGACATGATGTGATTGCTCAGATATGTTACGCAAGAAGACTGGCACAGAGGC 982
Query 864 TATATCCCGTCGCTAGAATGGTAGATCTTCATGGAGGTCATCTTGTAAGCCATGAGAGGA 923
||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 983 TATATCCAGTCGCTAGAATGGTGGATCTTCATGGAGGTCATCTTGTAAGCCACGAGAGAA 1042
Query 924 CAGAAGAGGTTAATAAAGCTCTTCTCGAGTTAATCAAGGCGTCAGAAATGAAGAAAATAC 983
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1043 CAGAAGAGGTTAATAAAGCTCTGCTCGAGTTAATCAAGGCGTCAGAAATGAAGAAAATAT 1102
Query 984 CAACTGATTGGACTAACCTCACCATGGAAACACCCGGTTATTTCAAGAAGAGACTAGCAC 1043
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||
Sbjct 1103 CAACTGATTGGACTAACCTCACCATGGAAACACCTGGTTATTTCAAGAGGAGACTAACAT 1162
Query 1044 TGATTAGAAGCTCACCGGAAGGCAAGAATGCCGTCTCTCCCGCACATTTCATAGCGGAAA 1103
|||||||||||||| ||||||||||||||| || |||||| |||||||||||||||||||
Sbjct 1163 TGATTAGAAGCTCAACGGAAGGCAAGAATGTCGCCTCTCCTGCACATTTCATAGCGGAAA 1222
Query 1104 AGTTCCATCGCTTTCTACTTTTCCTCTTCGGACTTCTGGTTTTGGCATTTGAGTATTCAA 1163
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1223 AGTTCCATGGCTTTCTACTTTTCCTCTTCGGGCTTCTGGTTTTGGCATTTGAGTATTCAA 1282
Query 1164 GAAGAGCTTTTAGGGCTGTAAAACCCGTCAAAGTTGGACCTTGTCTTACATAACAACAAC 1223
|||||||||| ||||||||||| ||||||||||||||||||| ||| |||||||||||||
Sbjct 1283 GAAGAGCTTTCAGGGCTGTAAACCCCGTCAAAGTTGGACCTTCTCTAACATAACAACAAC 1342
Query 1224 CCATCACATTTCAATTTGTCGACCAAATATATTCATACAAGCAATGAGACATTTCTTCAA 1283
|| |||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 1343 CCTTCACATATCAATTTGTCGACCAAATATTTTCATACAAGCAATGAGCCAGTTCTTCAA 1402
Query 1284 TGATCAAGCTGATGAAACATAAGAGCTTAAAGATAAGT-TTGCTGCAAACAGAAGCTAAG 1342
||||||||||||||| ||||||| ||||||||||| | |||||||||| ||| ||||||
Sbjct 1403 TGATCAAGCTGATGAGACATAAGGGCTTAAAGATAT-TATTGCTGCAAATAGAGGCTAAG 1461
Query 1343 AGAAGAAGACAGAGCTTTCACATGGA-AGAGATTATACAAACTGTTGATATATA 1395
||||| |||||| ||||| ||||||| || | | ||||||||||||||||||||
Sbjct 1462 AGAAGGAGACAGTGCTTTTACATGGATAG-G-TGATACAAACTGTTGATATATA 1513
> AT5G53048.1 | Symbols: | other RNA | chr5:21509861-21511850
FORWARD LENGTH=936
Length=936
Score = 254 bits (137), Expect = 2e-66
Identities = 153/161 (95%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 1044 TGATTAGAAGCTCACCGGAAGGCAAGAATGCCGTCTCTCCCGCACATTTCATAGCGGAAA 1103
|||||||||||||| ||||||||||||||| || |||||| |||||||||||||||||||
Sbjct 221 TGATTAGAAGCTCAACGGAAGGCAAGAATGTCGCCTCTCCTGCACATTTCATAGCGGAAA 162
Query 1104 AGTTCCATCGCTTTCTACTTTTCCTCTTCGGACTTCTGGTTTTGGCATTTGAGTATTCAA 1163
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 161 AGTTCCATGGCTTTCTACTTTTCCTCTTCGGGCTTCTGGTTTTGGCATTTGAGTATTCAA 102
Query 1164 GAAGAGCTTTTAGGGCTGTAAAACCCGTCAAAGTTGGACCT 1204
|||||||||| ||||||||||| ||||||||||||||||||
Sbjct 101 GAAGAGCTTTCAGGGCTGTAAACCCCGTCAAAGTTGGACCT 61
Score = 237 bits (128), Expect = 2e-61
Identities = 147/156 (94%), Gaps = 1/156 (1%)
Strand=Plus/Minus
Query 658 ATATCAGCAATATGTGAAAGGAATATCAGAAACTGGAATGCAGTCCAAGTACGGGTTTGA 717
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 ATA-CAGCAATATGTAAAAGGAATATCAGAAACTGGAATGCAGTCCAAGTACGGGTTTGA 852
Query 718 TGGCCAAATTAACACTTGTTGGTTACACAAAATCACAAAACCAGAGATCGTAGTAATCCG 777
||||||||||||| |||||||||||||||||||||||||| |||||| | | |||||||
Sbjct 851 TGGCCAAATTAACGCTTGTTGGTTACACAAAATCACAAAAGTAGAGATTGAACTAATCCG 792
Query 778 CTCGGCTGGGTTTCTTGTCTCAGTCATTCATGGAAG 813
||||||||| ||||||||||||||||||||||||||
Sbjct 791 CTCGGCTGGATTTCTTGTCTCAGTCATTCATGGAAG 756
Score = 204 bits (110), Expect = 2e-51
Identities = 118/122 (97%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 812 AGACATGATGTGATTGCTCAGATATGTTACGCAAGAAGACTGGCACAGAGGCTATATCCC 871
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 AGACATGATGTGATTGCTCAGATATGTTACGCAAGAAGACTGGCACAGAGGCTATATCCA 572
Query 872 GTCGCTAGAATGGTAGATCTTCATGGAGGTCATCTTGTAAGCCATGAGAGGACAGAAGAG 931
|||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 571 GTCGCTAGAATGGTGGATCTTCATGGAGGTCATCTTGTAAGCCACGAGAGAACAGAAGAG 512
Query 932 GT 933
||
Sbjct 511 GT 510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68724546105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5