BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497377
Length=888
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58800.1 | Symbols: | Quinone reductase family protein | ch... 1376 0.0
> AT5G58800.1 | Symbols: | Quinone reductase family protein |
chr5:23745891-23747274 REVERSE LENGTH=900
Length=900
Score = 1376 bits (745), Expect = 0.0
Identities = 843/890 (95%), Gaps = 7/890 (1%)
Strand=Plus/Plus
Query 1 GTATTGTTCTTGAACATCCCCGAAGCTAACTCCGAACCTC-AAACTGTTTCTTATTCTCC 59
|||||||||||||||||| |||||||||||||||||| || ||||||| |||| ||||||
Sbjct 1 GTATTGTTCTTGAACATCTCCGAAGCTAACTCCGAACATCAAAACTGTATCTTCTTCTCC 60
Query 60 TCTTCTTCCTTGGACCTTTTCACAAAGTTTCAGGGAC-AGGAGTTCTTGTTTTGTCTGCA 118
|| || ||||||| ||||||||||||||||||||||| | ||||| || | ||||| | |
Sbjct 61 TCCTCCTCCTTGGCCCTTTTCACAAAGTTTCAGGGACAAAGAGTT-TT-TGTTGTCAGTA 118
Query 119 ACTTCAAGCCCTACTAAGCAATGGCTGTCACCAAGATTTATATAGTGTACTATTCCTTGC 178
|||||||| || |||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 119 ACTTCAAG--CT-CTAAGCTATGGCTGTCACCAAGATTTATATTGTGTACTATTCCTTGC 175
Query 179 ACGGCCATGTCGAGACAATGGCACGAGAGGTTCTCCGAGGAGCAAACTCTGTTCCAGACG 238
||||||| ||||||||||||||||||||||| || || |||| |||||||||||||||||
Sbjct 176 ACGGCCACGTCGAGACAATGGCACGAGAGGTACTTCGGGGAGTAAACTCTGTTCCAGACG 235
Query 239 TGGAAGCAACACTCTGGCAAGTGCCAGAGACATTACCGGAGAAAATACTGGAGAAAGTGA 298
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 236 TGGAAGCAACACTTTGGCAAGTGCCAGAGACATTACCGGAGAAAATATTGGAGAAAGTGA 295
Query 299 AGGCCGTTCCAAGACCGGACGATGTGGCGGATATTCGACCAGAACAACTGGCGGAAGCCG 358
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 296 AGGCCGTTCCAAGACCGGACGATGTGCCGGATATTCGACCAGAACAACTGGCGGAAGCCG 355
Query 359 ACGGATTCATGTTTGGCTTTCCTTCTAGGTTTGGAGTGATGGCATCACAGGTCATGACTT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 ACGGATTCATGTTTGGCTTTCCTTCTAGGTTTGGAGTGATGGCATCACAGGTCATGACTT 415
Query 419 TCTTTGACAATACAAATGATCTCTGGACTACACAGGCTCTCGCTGGGAAACCTGCGGGAC 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 416 TCTTTGACAATACAAATGATCTCTGGACTACACAGGCTCTCGCTGGGAAACCTGCAGGAA 475
Query 479 TCTTCTGGAGTACGGGTTTCCACGGTGGAGGCCAAGAACTAACTGCGTTGACGGCAGTGA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TCTTCTGGAGTACGGGTTTCCACGGTGGAGGCCAAGAACTAACTGCGTTGACGGCAGTGA 535
Query 539 CAAAACTGGCTCATCACGGGATGATATTTGTACCGGTAGGATACACATTCGGTAAAGGCA 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 536 CAAAACTGGCTCATCACGGGATGATATTTGTACCGGTAGGATACACATTCGGTAAAAGTA 595
Query 599 TGTACGAGATGGGAGAGGTGAAAGGTGGTTCCCCGTATGGCTCAGGGACTTATGCAGCTG 658
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 596 TGTACGAGATGGGAGAGGTGAAAGGTGGTTCGCCTTATGGCTCAGGGACTTATGCAGCTG 655
Query 659 ATGGATCACGGGAGCCAACAGAGCTGGAGATTCAGCAGGCAAATTACCATGGCAAGTACT 718
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 ATGGATCACGCGAGCCAACAGAGCTGGAGATTCAGCAGGCAAATTACCATGGCAAGTACT 715
Query 719 TTGCAGGAATAGCCAAGAAACTCAAGAAACGGTCTCCTGTCTAAAGTCTAAACCAAATCA 778
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 716 TTGCAGGAATAGCCAAGAAACTCAAGAAACGGTCTCCTGTCTAAATTCTAAACCATATCA 775
Query 779 ACTCTGTATTTCATATACTAATCAATCTGTAAATGTGAAGGTGAATACTGAAAATAAGAT 838
||||||| |||| |||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 776 ACTCTGTGTTTCCTATACTAAACAATCTGTAAATGTAAAGGTGAACACTGAAAATAAGAT 835
Query 839 TGACATATACAGAGCAAAACATCTATGTGTAAGCTAATGGTCAACAAATC 888
|||||||||||||||||||| | ||||||||||||||||||| |||||
Sbjct 836 CGACATATACAGAGCAAAACACCGGTGTGTAAGCTAATGGTCAATAAATC 885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43352068861
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5