BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497397
Length=589
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31560.1 | Symbols: HCF153 | high chlorophyll fluorescence 1... 800 0.0
> AT4G31560.1 | Symbols: HCF153 | high chlorophyll fluorescence
153 | chr4:15295201-15296241 FORWARD LENGTH=645
Length=645
Score = 800 bits (433), Expect = 0.0
Identities = 561/617 (91%), Gaps = 32/617 (5%)
Strand=Plus/Plus
Query 1 AAAAATAATGGCGAGACTTTTCGTCTCTATCCTTATGCAACCCACACAGATAAGCTTCTC 60
|||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
Sbjct 12 AAAAATCATGGCGAGACTTTTCGTCTCTATCCCTATGCAACCCACACAAATAAGCTTCCC 71
Query 61 TGCGTCTTCTTCTCAGCCACTATTCTCGCCGCCGGCGAACAATTTTC-CCGATGGTGTAG 119
|||||||||||||||||||||||| || |||||||||||||| |||| ||||||||| ||
Sbjct 72 TGCGTCTTCTTCTCAGCCACTATTATCTCCGCCGGCGAACAA-TTTCACCGATGGTGGAG 130
Query 120 CCGGAGGATTATGTCTTACACGGAGAATCAGAGACTGTTCCGTGGTGACGCGAGCAGGGC 179
| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 131 CTGGGGGATTATGTCTTACACGGAGAATCAGAGACAGTTCCGTGGTGACGCGAGCAGGGC 190
Query 180 CTAGTACGAGCAGCTACTTGCTCGCGTTCGCCATTCCTGCTACTCTTATCGCCGCCACTG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 CTAGTACGAGCAGCTACTTGCTCGCGTTCGCCATTCCTGCTACTCTTATCGCCGCCACTG 250
Query 240 TCTTCACTTCAATCAAAATCGCTGATAAACTCGACGAAGATTTCCTTGAGGATATTGCGT 299
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 251 TCTTCACTTCAATCAAAATCGCTGACAAACTCGACGAAGATTTCCTTGAGGATATTGCGT 310
Query 300 TGAACCAAGCGATAAAAGCAGCAGAAAAGGGAGAGAATGGTGAAGGGGAAATCTCACTGG 359
|||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 311 TGAACCAAGCGATAAAAGCAGCAGAAAAGGGAGAGAATGGAGAAGGTGATATCTCACTGG 370
Query 360 ATGATGTGATTCAAGAACCTGTGCTTCAACGAACTCGTAATCGGCCTAAACGTGAAGTTT 419
| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 371 ACGATGTGATTCAAGAACCTGTGCTTCAACGAACACGTAACCGGCCTAAACGTGAAGTTT 430
Query 420 AGAAACGCGCACACAGATTCTTCA--AT---A-----C-----A--TGT--T----GT-G 455
| |||||| ||||||| ||||||| || | | | ||| | || |
Sbjct 431 AAAAACGCACACACAGCTTCTTCATGATGGGAATAGACGTTGTAACTGTAATACATGTTG 490
Query 456 T-TTT-GTATAAGAAAATGTAAGCTTGTAGCCTT-CCTAGTCCCGTTTATAGTTGTAGTT 512
| ||| |||||||||||| ||||| ||||||||| |||||||||||||||||||||||||
Sbjct 491 TGTTTTGTATAAGAAAATTTAAGCGTGTAGCCTTTCCTAGTCCCGTTTATAGTTGTAGTT 550
Query 513 ACTGGTCATATTACATTACCGTTTGATCATTTTGTAAAGAAAAAACGGATGATGAATCAA 572
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 ACTGGT--T-TTACATTACCGTTTGATCATTTTGTAAAGAAAAAACGGATGATGAATCAA 607
Query 573 AAACCTCGTTACATTTA 589
||||||| ||||| |||
Sbjct 608 AAACCTCATTACAGTTA 624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28332058908
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5