BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497403
Length=827
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43460.1 | Symbols: | HR-like lesion-inducing protein-relat... 1085 0.0
AT1G04340.1 | Symbols: | HR-like lesion-inducing protein-relat... 409 3e-113
> AT5G43460.1 | Symbols: | HR-like lesion-inducing protein-related
| chr5:17459873-17461751 FORWARD LENGTH=858
Length=858
Score = 1085 bits (587), Expect = 0.0
Identities = 733/801 (92%), Gaps = 20/801 (2%)
Strand=Plus/Plus
Query 1 TGTCAATAAATAAACCTAAACCAGTAGAACCGAACTCTTTTCCTCCTCG-C----CGAAG 55
||| ||||||||||||||||||| |||||||| | | |||||||||||| | |||||
Sbjct 5 TGTTAATAAATAAACCTAAACCAATAGAACCGCAGT-TTTTCCTCCTCGCCGAAACGAAG 63
Query 56 AAGATTCTCCTTGTCTCCGTCAGACAAATCTACGAACAAGCGAGCCTGATCTCAAGACCA 115
|||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 64 AAGATTCTCCTTCTCTCCGTCAGACAAATCTACGAACAAGCGAGCCTGAGCTTAAGACCA 123
Query 116 AACACAGAGAGATGGGTTTCTTCTCGTTTCTTGGAAGAGTTCTCTTCGCTTCTCTCTTTA 175
||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 124 AACTCATAGAGATGGGTTTCTTCTCTTTTCTTGGAAGAGTTCTCTTCGCTTCTCTCTTTA 183
Query 176 TCCTCTCCGCTTGGCAAATGTTCAATGATGGTGGTCCTGCAGCTAAAGAATTGGCTCCAA 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 TCCTCTCCGCTTGGCAAATGTTCAATGATGGTGGTCCTGCAGCTAAAGAATTGGCTCCAA 243
Query 236 AGCTTGATTTGGCCAAGGCACATCTATCTTCTAGATTAGGGGTAACATTGCCCAAAATAG 295
|||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 244 AGCTTGATTTGGTTAAGGCACATTTATCTTCTAGATTAGGAGTAACATTGCCCAAAATAG 303
Query 296 AGGTGAGACAAGTTGTTGTTACTATTATTGCCCTGAAAGGAGTCGGAGGCTTACTCTTTG 355
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 304 AGGTGAGACAAGTCGTTGCTACTATTATTGCCCTGAAAGGAGTCGGAGGCTTACTCTTTG 363
Query 356 TTATCGGAAACATCTTCGGTGCTTATCTTCTGGCTTTCTACTTGGTTGTTGTCGGTCCTA 415
|||||||||||| ||||||||||||||||||||||| ||||||||| ||| |||||||||
Sbjct 364 TTATCGGAAACACCTTCGGTGCTTATCTTCTGGCTTCCTACTTGGTGGTTTTCGGTCCTA 423
Query 416 TTCTGTATGATTTCTACAACTACAAACCTCAGGAACGTCATTTCTCTCTTCTGTTGACAG 475
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 424 TTCTCTATGATTTCTACAACTACGGACCTCAGGAACGTCATTTCTCTCTTCTGTTGACAG 483
Query 476 AGTTCTTACAGAGTATTGCACTCTTTGGAGCATTACTCTTCTTTATTGGAATGAAGAACT 535
||||||| ||||| |||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 484 AGTTCTTGCAGAGCGTTGCACTCTTTGGAGCGTTACTCTTCTTTATCGGAATGAAGAACT 543
Query 536 CGTCACCCTCCAAGAGGAATCTGAAGAAGAGGACACCTAAGCCGAAAGCTGCTTAATATC 595
|| ||||| |||||| |||| ||||||||||||||||||||||||||||||| || ||||
Sbjct 544 CGACACCCGCCAAGAAGAATTTGAAGAAGAGGACACCTAAGCCGAAAGCTGCCTAGTATC 603
Query 596 AATATTAGTTATCTT-T--TTAT-CaaaaaaaaaCGAGCAATACCTTTGGCTTTTCCTTT 651
|||||||||| |||| | || | | | | || | ||||||||| | ||||||||||
Sbjct 604 AATATTAGTTTTCTTCTGGTTTTGCCATGAGCAA-G--CAATACCTT-GCCTTTTCCTTT 659
Query 652 TTTCCCGACAAAATCTTTCCTTAGAACATTGGTTTTCTTTCTGTTTTAGGATTCTTAGAT 711
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 660 TTTCCCGACAAAATCTTTCCTTAGAACTTTTGTTTTCTTTCTGTTTTAGGATTCTTAGAT 719
Query 712 TAGCTCATGATCTTATACT------GTGATTTGATATTGGGGTTCTTGAAGTTTTGATTT 765
||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||
Sbjct 720 TAGCTCATGATCTTATACTAATACTGTGATTTGATATTGGGGATCTTGAAGTTTTGGTTT 779
Query 766 GTTGAAACTTCAACCATGCAG 786
||||||||| ||||||||||
Sbjct 780 GTTGAAACTGGAACCATGCAG 800
> AT1G04340.1 | Symbols: | HR-like lesion-inducing protein-related
| chr1:1163097-1164851 REVERSE LENGTH=842
Length=842
Score = 409 bits (221), Expect = 3e-113
Identities = 408/495 (82%), Gaps = 26/495 (5%)
Strand=Plus/Plus
Query 117 ACACAGAG-AGATGGGTTTCTTCTCGTTTCTTGGAAGAGTTCTCTTCGCTTCTCTCTTTA 175
||| |||| | |||||||||||||| ||||||||||||||||||||||||||| | || |
Sbjct 104 ACATAGAGAAAATGGGTTTCTTCTCTTTTCTTGGAAGAGTTCTCTTCGCTTCTTTATTCA 163
Query 176 TCCTCTCCGCTTGGCAAATGTTCAATGA-T--GG---TG--G-T---CCTGCAGCTAAAG 223
|||||||||||||||||||||||||||| | || || | | || ||||||||||
Sbjct 164 TCCTCTCCGCTTGGCAAATGTTCAATGACTTTGGAACTGACGGTGGTCCAGCAGCTAAAG 223
Query 224 AATTGGCTCCAAAGCTTGATTTGGCCAAGGCACATCTATCTTCTAGATTAGGG-GTAACA 282
| || ||||||||||||||| || |||| |||||||| ||||| | ||| ||| ||| ||
Sbjct 224 AGTTAGCTCCAAAGCTTGATCTGACCAAAGCACATCTCTCTTCCATATT-GGGAGTATCA 282
Query 283 TTGCCCAAAATAGAGGTGAGACAAGTTGT-TGTTACTATTATTGCCCTGAAAGGAGTCGG 341
|||||||| ||||||||| |||||| || || ||||| |||| |||||||| | ||
Sbjct 283 TTGCCCAACTTAGAGGTGAAACAAGTCGTGTGGG-CTATTGTTGCTCTGAAAGGCCTAGG 341
Query 342 AGGCTTACTCTTTGTTATCGGAAACATCTTCGGTGCTTATCTTCTGGCTTTCTACTTGGT 401
||||||||||||||||||||| |||||||| ||||| |||||||||||| ||||||||||
Sbjct 342 AGGCTTACTCTTTGTTATCGGCAACATCTTTGGTGCCTATCTTCTGGCTGTCTACTTGGT 401
Query 402 TGTTGTCGGTCCTATTCTGTATGATTTCTACAACTACAAACCTC-AGGAACGTCATTTCT 460
|||||| |||| ||| | ||||||||||||||||| ||| | |||| || || ||||
Sbjct 402 GGTTGTCAGTCCCATTTTATATGATTTCTACAACTATGGACC-CGAGGACCGCCAATTCT 460
Query 461 CTCTTCTGTTGACAGAGTTCTTACAGAGTATTGCACT-CTTTGGAGCATTACTCTTCTTT 519
||||||| ||||| || ||||| |||||| |||| || || || ||||| || || |||
Sbjct 461 CTCTTCTATTGACTGAATTCTTGCAGAGTGTTGCGCTTCTCGGG-GCATTGCTATT-TTT 518
Query 520 -ATTGGAATGAAGAACTCGTCACC---CTCCAAGAGGAATCTGAAGAAGAGGACACCTAA 575
|| ||||||||||| || || | ||||||||||| ||||||||||||||| || ||
Sbjct 519 CATCGGAATGAAGAATTCAACAACGAGCTCCAAGAGGATTCTGAAGAAGAGGACTCCCAA 578
Query 576 GCCGAAAGCTGCTTA 590
||| |||||||||||
Sbjct 579 GCCTAAAGCTGCTTA 593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40287785894
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5