BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497416
Length=1175
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63530.1 | Symbols: ATFP3, FP3 | farnesylated protein 3 | ch... 1792 0.0
AT3G02960.1 | Symbols: | Heavy metal transport/detoxification ... 69.4 7e-11
> AT5G63530.1 | Symbols: ATFP3, FP3 | farnesylated protein 3 |
chr5:25433154-25435834 FORWARD LENGTH=1413
Length=1413
Score = 1792 bits (970), Expect = 0.0
Identities = 1096/1155 (95%), Gaps = 16/1155 (1%)
Strand=Plus/Plus
Query 29 AGgaagagaagaaaccagaagcagcagaggaaaagaaaatggaagagaagaaaccagaag 88
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 133 AGGAAGAGAAGAAACCAGAAGCAGCAGAGGAAAAGAAAATGGAAGAGAAGAAACC---AG 189
Query 89 aagagaaaaaagaaggagaagaaaagaaagtggaggctgagaaaaaaggagaagattctg 148
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 190 AAGAGAAAAAAGAAGGAGAAGACAAGAAAGTGGATGCTGAGAAAAAAGGAGAAGATTCTG 249
Query 149 acaagaaaCCTC----A--AGAATCTAACAAAGATTCCAAAGAAGATTCTGCTCCCGCGC 202
||||||| |||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct 250 ACAAGAAGCCTCAAGAAGGAGAATCTAACAAAGATTCCAAAGAAGATTCTGCTCCGGCGG 309
Query 203 CGCCGGAGGCTCCAGCACCGCCTCCTCCGCCGCAAGAGATTGTTCTTAAGGTTTACATGC 262
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 310 CGCCTGAGGCTCCAGCACCGCCTCCTCCGCCGCAAGAGGTTGTTCTTAAGGTTTACATGC 369
Query 263 ACTGTGAAGGATGTGCTAGAAAAGTCCGCCGTTGTCTCAAAGGCTTCGAAGGAGTGGAAG 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 ACTGTGAAGGATGTGCTAGAAAAGTCCGCCGTTGTCTCAAAGGCTTCGAAGGAGTGGAAG 429
Query 323 ATGTGATGACTGATTGTAAAACGGGGAAAGTGGTGGTGAAAGGTGAGAAAGCTGATCCAT 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 ATGTGATGACTGATTGTAAAACGGGGAAAGTGGTGGTGAAAGGTGAGAAAGCTGATCCAT 489
Query 383 TGAAAGTATTAGCTAGAGTTCAGAGGAAGACCCACCGTCAAGTTCAGCTTCTGTCTCCGA 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 TGAAAGTATTAGCTAGAGTTCAGAGGAAGACCCACCGTCAAGTTCAGCTTCTGTCTCCGA 549
Query 443 TTCCTCCGCCACCTCCGCCGCCGGAAAAGAAAGCAGAGGAGGAGAAACCCATTGTGGAAG 502
||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 550 TTCCTCCTCCGCCTCCGCCGCCGGAGAAGAAAGCAGAGGAGGATAAACCCATTGTGGAAG 609
Query 503 AGAAGAAAGTGAAGCCTCCGGTGGTCGTGACGGTGGTTCTTAAGGTTCACATGCACTGTG 562
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 610 AGAAGAAAGTGGAGCCTCCGGTGGTTGTGACGGTGGTTCTTAAGGTTCACATGCACTGTG 669
Query 563 AAGCTTGTGCGACAGAGATCAAGAAACGGATCATGAGAATGAAAGGAGTGGAATCTGCTG 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 AAGCTTGTGCGACAGAGATCAAGAAACGGATCATGAGAATGAAAGGAGTGGAATCTGCTG 729
Query 623 AATCCGACTTAAAGGGTTCTCAAGTAACGGTGAAAGGAGTGTTTGAACCACAAAAGCTTG 682
|||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 730 AATCCGACTTAAAGAGTTCTCAAGTGACGGTGAAAGGAGTTTTTGAACCACAAAAGCTTG 789
Query 683 TAGAGTACGTTTATAAGCGAACCGGAAAACACGCTGCGATCATGAAAATCGACCCACCGC 742
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 790 TAGAATACGTTTATAAGCGAACCGGAAAACATGCTGCGATCATGAAAATCGACCCACCGC 849
Query 743 CCCCACCACCACCTGAGGAGTCGGCAGCagaaggagagaagaag-gaagaaggaaaggga 801
| |||||||||||||||||| |||| || | || | |||| || |||||||||| | |
Sbjct 850 CTCCACCACCACCTGAGGAGGCGGCTGCGGCAGC-G-GAAGGAGAGAAGAAGGAA-GA-A 905
Query 802 gaaaacggtggaggagaatccaaaggcgaagaagggaaggacgaaaaggcgaagacggac 861
||||| || | |||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 906 GAAAAGGGAGAAGGAGAATCCAAAGGCGAAGAAGGGAAGGATGATAAGGCGAAGACGGAC 965
Query 862 gaagaaaagaaagaaggggatggcggtaaaggggaaggCGAAGCAGCGGAAAATGGCGGT 921
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 966 GAAGAAAAGAAAGAAGGGGATGGTGGTAAAGGGGAAGGCGAAGCAGCGGATAATGGCGGT 1025
Query 922 GGGGAGGAAGAGGGTAAAGTTGTGGAGGTGAGAAAGATAGAGAATCCTTATTACTACTAC 981
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 GGGGAGGAAGAAGGCAAAGTTGTGGAGGTGAGAAAGATAGAGAATCCTTATTACTACTAC 1085
Query 982 TATTACCAACCACCGCGTGTGGC-AGTTCCGCCTATGGAAATGCCGCCACACGCTTATCC 1040
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1086 TATTACCAACCACCGCGTGTGGCGA-TTCCGCCTATGGAAATGCCGCCACACGCTTATCC 1144
Query 1041 GCCTCAATTATTCAGTGACGAGAATCCAAATGCATGTACCGTAATGTAACAAAGAAAAAC 1100
||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1145 GCCTCAATTGTTCAGCGACGAGAATCCAAATGCATGTACTGTAATGTAACAAAGAAAAAC 1204
Query 1101 GCAAACGCTATAATGGGTATAATGGGAAATATTCTGAACAATTTTGATGAAGTGGGTACA 1160
||||| ||||||| |||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1205 GCAAATGCTATAAAGGGTATAATGGGGAATATTTTGAACAATTTTGATGAAGTGGGTACA 1264
Query 1161 TGGCCTTTGCTGTCT 1175
|||| ||||||||||
Sbjct 1265 TGGCATTTGCTGTCT 1279
> AT3G02960.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr3:667245-668626 REVERSE LENGTH=741
Length=741
Score = 69.4 bits (37), Expect = 7e-11
Identities = 41/43 (95%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 236 AAGAGATTGTTCTTAAGGTTTACATGCACTGTGAAGGATGTGC 278
|||| |||||||| |||||||||||||||||||||||||||||
Sbjct 107 AAGAAATTGTTCTGAAGGTTTACATGCACTGTGAAGGATGTGC 149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57680426205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5