BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497434
Length=1006
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39470.1 | Symbols: PPL2 | PsbP-like protein 2 | chr2:164762... 1149 0.0
> AT2G39470.1 | Symbols: PPL2 | PsbP-like protein 2 | chr2:16476216-16477843
FORWARD LENGTH=1026
Length=1026
Score = 1149 bits (622), Expect = 0.0
Identities = 724/771 (94%), Gaps = 16/771 (2%)
Strand=Plus/Plus
Query 236 CTTACCAAAAAGGCAGCGGAAGCAATTGGAAGAGAAGGCAAGCTCTTGTGGGAGTAGGAA 295
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 262 CTTACCAAAAAGGCAGCGGAAACAATTGGAAGAGAAGGCAAGCTCTTGTGGGAGTAGGAA 321
Query 296 CCTTAGTGGCAACTTCAATTCCAGCAGCTTTGCTTCTTGCTGAAGAGATACCAAAAAGCT 355
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 322 CTTTAGTGGCAACTTCAATTCCAGCAACTTTGCTTCTTGCTGAAGAGATACCAAAAAGCT 381
Query 356 ACTCGCCTTTTGTGGATCGAGAAGACGGGTATTCTTACTATTACCCATCAGACTGGAGGG 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 ACTCGCCTTTTGTGGATCGAGAAGACGGGTATTCTTACTATTACCCATCAGACTGGAGGG 441
Query 416 AATTTGACTTCAGGGCGCATGATTCAGCCTTCAAAGACAGATATTTGCAACTGCAGAATG 475
|||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 442 AATTTGACTTCAGGGCACATGATTCAGCCTTCAAAGATAGATACTTGCAACTGCAGAATG 501
Query 476 TTCGCGTCAGGTTCATACCAACTGAGAAAAACGACATCCGTGAAGTAGGTCCTATGGAAG 535
| || ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 502 TGCGGGTCAGGTTCATACCAACGGAGAAAAACGACATCCATGAAGTAGGTCCTATGGAAG 561
Query 536 AGGTGGTTTATGATCTAGTGAAGCATAAGTTTGCAGCACCAAACCAAGTAGCTACCATTT 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 562 AGGTGGTTTATGATCTAGTGAAGCATAAGTTTGCAGCACCAAACCAAGTAGCTACCATCT 621
Query 596 ACGATATGAAAGAGAGGGTGGAAGATGGAAGGAACTATTACACGTTTGAGTATGGACTTA 655
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 622 ACGATATGAAAGAGAGGGTGGAAGATGGAAAGAACTATTACACGTTTGAGTATGGACTAA 681
Query 656 GAACTCCCATCTATGCAACCACTTCCTTTGCAACAGTGGCAGTTGGAAACAACAGATACT 715
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 GAACTCCTATCTATGCAACCACTTCCTTTGCAACAGTGGCAGTTGGAAACAACAGATACT 741
Query 716 ACACACTCATAGTTGGAGCAAATGAGAGGAGGTGGAGGAAAGTGAAAAAGCAGCTTCAAG 775
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 742 ACACTCTCATAGTTGGAGCAAATGAGAGAAGGTGGAGGAAAGTGAAAAAGCAGCTTCAAG 801
Query 776 TTGTGGCTGACTCTTTGAAGATCCTTGAGATTTGACAAACACAAGAAACATCTTTATGTT 835
||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 802 TTGTGGCCGACTCTTTGAAGATCCTTCAGATTTGACAAACACAAGAAACATCTT-A---- 856
Query 836 ACTCCTATCTATCTTTCTCTCTCTGTGGTTACATAATTGTATGTAGATGACAATTTGATA 895
||||||| |||||||||||||||||||||||| || ||| ||||||| |||||||||||
Sbjct 857 -CTCCTATATATCTTTCTCTCTCTGTGGTTACAAAACTGTCTGTAGATAACAATTTGATA 915
Query 896 TATTTCCATCTTCTCCACAACTCCAACGATGTTTTATGGCATTGTGGCTTGTGAGTTGGA 955
| |||| || ||||| | ||||||||||||| ||| |||||||||| |||| ||
Sbjct 916 T-TTTC-ATATTCTCTATAACTCCAACGATGGTTT-TGGCATTGTG-------AGTTAGA 965
Query 956 TTCTGAGTTGGTTCAGTAATTGAATCAAACTTGCAAATAAAGTGCATATAA 1006
||||||||||||||||||||| |||||||||||||||||||||| | ||||
Sbjct 966 TTCTGAGTTGGTTCAGTAATTCAATCAAACTTGCAAATAAAGTGGAAATAA 1016
Score = 283 bits (153), Expect = 2e-75
Identities = 215/242 (89%), Gaps = 15/242 (6%)
Strand=Plus/Plus
Query 1 ATCCACATGTTAATGAATGGAGAAG-CAAAGAAATGACGAAAATCAGAAATGTCTTATCC 59
||||||||||| ||||||||||||| | |||||||||||||||||||||| |||||| |
Sbjct 1 ATCCACATGTTGATGAATGGAGAAGTCCGAGAAATGACGAAAATCAGAAATTTCTTAT-C 59
Query 60 ACACACAAGAACACTAAGGCAATGTTCATTGATCTCGTCTAAAGTCTTGTGAATTGTAGC 119
|||| ||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 60 -CACA-TAGAACACTAAGGCAATGTTCATTGA--TCATCAAAAGTCTTGTGAATTGTAGC 115
Query 120 CATTATGGCAGCAGTCTCGTCACTCTCAATACGCTATGGT-G--TCTCACCAACAATCTC 176
|| ||| | |||||||| ||||||||||| |||| |||| | ||||||||||||||||
Sbjct 116 CACTAT-G--GCAGTCTCCTCACTCTCAATCCGCTGTGGTGGTTTCTCACCAACAATCTC 172
Query 177 CCACAAGACAGAGATTCTCTGTCCAAATCCATCACTCAAAGCTTGTT-T--ACTTTCATC 233
|||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 173 CCACAAGACAGAAATTCTCTGTCCAAATCCATCACTCAAAGCTTGTTGTTTACTTTCATC 232
Query 234 CG 235
||
Sbjct 233 CG 234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49279698207
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5