BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497437
Length=1335
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39450.1 | Symbols: MTP11, ATMTP11 | Cation efflux family pr... 2204 0.0
> AT2G39450.1 | Symbols: MTP11, ATMTP11 | Cation efflux family
protein | chr2:16471632-16473818 REVERSE LENGTH=1380
Length=1380
Score = 2204 bits (1193), Expect = 0.0
Identities = 1290/1337 (96%), Gaps = 6/1337 (0%)
Strand=Plus/Plus
Query 1 aaaaaaaaaaTACAAAGTCTCTCTCCAAATCCGCCGGAAAAATGGTTGAGCCAGCTAGTC 60
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 46 AAAAAAAAAATACAAAGTCTCTCTCC---GCCGCCGGAAAAATGGTTGAGCCAGCTAGTC 102
Query 61 AAGATTCCGACGAAGGGATCTCGCTGCTCGAGTTTCACGGTAACGGTGACCGTTCCTGGC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 103 CAGATTCCGACGAAGGGATCTCGCTGCTCGAGTTTCACGGTAACGGTGACCGTTCCTGGC 162
Query 121 AGTTAAATTTCGATGATTTCCAGGTTTCACCGGAGCACAAGGAGAAGAAGA-CTCCGAGT 179
|||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||
Sbjct 163 AGTTAAATTTCGATGATTTCCAGGTTTCACCGGAACACAAGGAGAAGAA-ATCTCCGAGT 221
Query 180 AAACTACACAACTGTCTGGGTTGTTTGGGTCCGGAAGACAATGTAGCAGACTATTACCAG 239
||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 222 AAACTACACAACTGTCTTGGTTGTTTGGGTCCGGAAGACAATGTGGCAGATTATTACCAG 281
Query 240 CAGCAAGTAGAGATGCTTGAGGGGTTTACTGAAATGGATGAACTTGCAGAACGCGGCTTT 299
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 282 CAGCAAGTAGAGATGCTTGAGGGCTTTACTGAAATGGATGAACTTGCAGAACGTGGCTTT 341
Query 300 GTTCCTGGAATGTCAAAGGAAGAGCAGGATAATTTGGCTAAAAGTGAGACATTGGCGATT 359
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 342 GTTCCTGGAATGTCAAAGGAAGAGCAGGATAATTTGGCTAAAAGCGAGACATTGGCGATT 401
Query 360 AGAATATCAAACATTGCAAACATGGTTCTTTTTGCTGCTAAAGTCTACGCTTCTGTCACA 419
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 402 AGAATATCAAACATTGCAAACATGCTTCTTTTTGCTGCTAAAGTCTATGCTTCTGTCACT 461
Query 420 AGTGGCTCTTTAGCAATCATTGCCTCTACATTGGACTCTCTTCTTGATCTTCTTTCTGGC 479
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 AGTGGCTCTTTAGCTATCATTGCCTCTACATTGGACTCTCTTCTTGATCTTCTTTCTGGC 521
Query 480 TTCATTCTGTGGTTTACCGCCTTCTCCATGCAGACACCCAACCCGTATCAGTATCCCATT 539
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 TTCATCCTCTGGTTTACCGCCTTCTCCATGCAGACACCCAACCCGTATCAGTATCCCATT 581
Query 540 GGCAAGAAACGCATGCAACCACTGGGAATTCTAGTCTTTGCATCAGTGATGGCAACACTT 599
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 582 GGCAAGAAACGCATGCAACCACTGGGAATCCTAGTCTTTGCATCAGTGATGGCAACACTT 641
Query 600 GGATTGCAGATTATCTTGGAATCTCTTCGCACGATGTTATCCAGCCACAAGGAGTTCAGC 659
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 642 GGATTGCAGATTATCTTGGAATCTCTTCGCACAATGTTATCCAGCCACAAGGAGTTCAAC 701
Query 660 CTAACAAAAGAGCAAGAGAGTTGGGTAGTTGGGATCATGCTTTCTGTTACATTGGTCAAA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 CTAACAAAAGAGCAAGAGAGTTGGGTAGTTGGGATCATGCTTTCTGTTACATTGGTCAAA 761
Query 720 CTGCTTCTGGTTCTTTACTGCAGATCCTTCACTAACGAGATTGTTAAAGCTTATGCTCAA 779
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 762 CTGCTTCTGGTTCTTTACTGCAGATCCTTCACTAACGAGATCGTTAAAGCTTATGCTCAA 821
Query 780 GATCACTTCTTCGACGTCATCACAAACATCATCGGACTCATTGCAGTAATCCTCGCCAAT 839
||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 822 GATCATTTCTTCGACGTCATCACAAACATCATTGGACTCATTGCAGTAATCCTGGCCAAT 881
Query 840 TACATCGACGATTGGATTGATCCAGTTGGAGCTATCATTCTTGCATTATACACGATACGG 899
||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 882 TACATTGATTATTGGATTGATCCAGTTGGAGCTATCATTCTTGCATTATACACAATACGG 941
Query 900 ACATGGTCAATGACGGTATTGGAGAACGTGAACTCTCTTGTTGGGAAATCAGCTAGACCA 959
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 942 ACATGGTCAATGACGGTCTTGGAGAACGTTAACTCTCTTGTTGGGAAATCAGCTAGACCA 1001
Query 960 GAGTATCTGCAGAAACTAACTTACCTGTGTTGGAACCACCATAAAGCAATTAGGCACATT 1019
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1002 GAGTATCTGCAGAAACTAACTTACCTGTGTTGGAACCACCATAAAGCCATTAGGCACATT 1061
Query 1020 GATACAGTGAGGGCTTACACATTTGGCTCTCATTATTTTGTGGAGGTTGACATTGTTCTC 1079
|| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1062 GACACAGTGAGGGCATACACATTTGGCTCTCATTATTTTGTGGAGGTTGATATTGTTCTC 1121
Query 1080 CCAGCTGACATGCCTCTGCAAGCGGCTCACGACATTGGAGAATCGCTGCAAGAGAAGCTC 1139
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1122 CCAGCTGACATGCCTCTGCAAGTGGCTCACGACATTGGAGAATCGCTGCAAGAGAAGCTC 1181
Query 1140 GAGCTGCTAGAGGAGATCGAACGGGCTTTTGTGCATCTTGATTATGAGTACACTCACAAA 1199
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 GAGCTACTAGAGGAGATCGAACGGGCTTTTGTGCATCTTGATTATGAGTACACTCACAAA 1241
Query 1200 CCCGAGCACGCTAGATCCCACCGTTAGCTGTTTCTCCTTTTCAA-GTTCTCTACGTTTCT 1258
|| |||||||||||||||||| ||||||||||| ||||||| || | |||||||||||||
Sbjct 1242 CCTGAGCACGCTAGATCCCACTGTTAGCTGTTTATCCTTTTTAAAGATCTCTACGTTTCT 1301
Query 1259 AAATCTTTACAAATTAATCTTCACTGTATTGTTGTTTAGTAGACAATTGTGAGATAAAGG 1318
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 ATATCTTTACAAATTAATCTTCACTGTATTGTTGTTTAGTAGACAATTGTGAGATAAAGG 1361
Query 1319 AGTACCTTTGTAACTAT 1335
| |||||||||||||||
Sbjct 1362 AATACCTTTGTAACTAT 1378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65712513405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5