BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg497524 Length=1366 Score E Sequences producing significant alignments: (Bits) Value AT2G35260.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1834 0.0 > AT2G35260.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17840.1); Has 42 Blast hits to 42 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:14849536-14851969 FORWARD LENGTH=1623 Length=1623 Score = 1834 bits (993), Expect = 0.0 Identities = 1291/1424 (91%), Gaps = 64/1424 (4%) Strand=Plus/Plus Query 1 ACACGCACATAGCAGAGCAAATGAAGAAGACGAAGCACACTGAGAATTCACCGGTCAGAG 60 ||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1 ACAAGCACTTAGCAGAGCAAATGAAGAAGACGAAGCACACTGAGAATTCACCGGCCAGAG 60 Query 61 ATCACGACTGAGTACTT-TAGTTTTCCGATTACCTCGAGCAACCTTAAATGGAGCTTCCG 119 ||||| | | ||| || ||| |||||| |||| |||| |||||| ||||||||||||| Sbjct 61 ATCACCAATAAGT-GTTGTAG-TTTCCGGTTACTTCGAATAACCTTCAATGGAGCTTCCG 118 Query 120 TTACTCTCGTATGCTAGCTCCGCGTCGTTTTCGCGGACAGGC-T-T--T-TAC-TCTTCT 173 |||||||||||||||||||||||||||||||| ||||||||| | | | | | |||||| Sbjct 119 TTACTCTCGTATGCTAGCTCCGCGTCGTTTTCACGGACAGGCTTATGCTCTTCTTCTTCT 178 Query 174 TCTTCCTCAACTAGTATCTGTGAGTTCCCGGAGAGAAGACGGAGCTTCAGAA-TGAGATT 232 || |||||||||||||||| |||||| ||||||||||||||||| || | || ||||||| Sbjct 179 TCCTCCTCAACTAGTATCTATGAGTTTCCGGAGAGAAGACGGAG-TTTAAAATTGAGATT 237 Query 233 CAATGGTGGAGAAAGGTCACGAAGCGTTATAGCTTCCGCTGAACGGAGCAGCGAAGGGAT 292 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 238 CAATGGTGGAGAAAGGTCACGAAGCGTTATAGCTTCCGCTGAACGGAGCAGTGAAGGGAT 297 Query 293 CGAGAAG---ACAG--A----C---GGC---------GGA-G-G-A-G--GATTTGCTGG 325 |||||| |||| | | ||| ||| | | | | |||||||||| Sbjct 298 TGAGAAGACAACAGACACCGTCGGTGGCGGAGGAGGAGGAGGAGCAGGCAGATTTGCTGG 357 Query 326 TACTGCCATGGAGGTGACAACACTTGATCGTGGATTCGCTAACTCCACCACCGTTGATTT 385 ||||||||||||||| || |||||||||||||| || ||||||||||||||||||||||| Sbjct 358 TACTGCCATGGAGGTTACTACACTTGATCGTGGTTTTGCTAACTCCACCACCGTTGATTT 417 Query 386 TCCGATCTGGGACAAAATTGGCGCCGTCGTTAGACTTACTTACGGAATC-G------CGG 438 |||||||||||||||||| ||||||||||||||||||||||| |||||| | || Sbjct 418 TCCGATCTGGGACAAAATCGGCGCCGTCGTTAGACTTACTTATGGAATCGGAATATATGG 477 Query 439 AGTC-A----T-TA-CTGGAAGATTCATATGGTTCGGTGACTGGAATTGATTCATCTGGT 491 || | | | || | |||||||| |||| |||| |||||||||||||||||||||||| Sbjct 478 AG-CAATGGCTGTAGCAGGAAGATTTATAT-GTTCAGTGACTGGAATTGATTCATCTGGT 535 Query 492 GGATTTGATCCTTCTCTTGACGCACTTCTCGCCGGACTTGGCTATGCAACACCACCAATC 551 |||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||| Sbjct 536 GGATTTGATCCTTCTCTTGATGCACTACTTGCTGGACTTGGCTATGCAACACCACCAATC 595 Query 552 ATGGCTCTTCTCTTCATACTCGATGATGAAGTTGTGAAGCTATCACCGCACGCTCGGGCC 611 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 596 ATGGCTCTTCTCTTCATACTCGACGATGAAGTTGTGAAGCTATCACCGCATGCTCGGGCC 655 Query 612 ATTAGAGATGTGGAAGATGAGGAGCTCAGAAGCTTTTTCTTCGGAATGTCCCCATGGCAG 671 |||||||||||||||||||| || || ||||||||||||||||||||||||||||||||| Sbjct 656 ATTAGAGATGTGGAAGATGAAGAACTAAGAAGCTTTTTCTTCGGAATGTCCCCATGGCAG 715 Query 672 TTTATACTCATTGTCGCGGCTAGTTCAATAGGAGAAGAGCTCTTTTACCGTGTTGCTGTA 731 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 716 TTTATACTCATTGTCGCGGCCAGTTCAATAGGAGAAGAGCTCTTTTACCGTGTTGCTGTA 775 Query 732 CAGGGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCTAGAGGC 791 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 776 CAGGGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCTAGAGGC 835 Query 792 ATGGCATCTCTGACCGGAGTGTTTCCTCCATTTGTCCCATTTGCTCAAGCCTTTGCAGCT 851 ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 836 ATGGCATCTCTGACCGGAGTGTTTCCTCCATTTGTCCCATTTGCTGAAGTCTTTGCAGCT 895 Query 852 GTAATCACTGCCACTCTCACAGGCTCTCTCTACTTTCTTGCTGCTTCTCCAAAGGACCCG 911 |||||||| || |||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 896 GTAATCACCGCGACTCTCACAGGCTCTCTCTACTTTCTTGCTGCGTCTCCAAAAGACCCG 955 Query 912 ACATACATTGTTGCCCCGGTTTTAAGGTCACGCCGAGATGATTTTAAGAAGCTTTTGTCA 971 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 956 ACATACATAGTTGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCA 1015 Query 972 GCTTGGTACGAGAAGAGACAGATGAAGAAGATTTACTCTCCCCTACTCGAAGGACTCTTA 1031 |||||||| |||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct 1016 GCTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTCCTTGAAGGACTCTTA 1075 Query 1032 GCCCTCTATCTCGGTATTGAATGGGTTCAGACCGATAATATTTTAGCACCGATGATGACG 1091 |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 1076 GCCCTCTATCTCGGTATTGAATGGGTTCAGACGGATAATATATTAGCACCGATGATGACG 1135 Query 1092 CATGGTATATACTCAGCAGTCATATTAGGACATGGGCTGTGGAAAATTCATGATCACCGG 1151 |||||||||||||| || ||||||||||| |||||||||||||||||||| ||||||||| Sbjct 1136 CATGGTATATACTCGGCGGTCATATTAGGGCATGGGCTGTGGAAAATTCACGATCACCGG 1195 Query 1152 AGAAGATTACGCCGGAGAATCGAACGCATTAGATCGGAGGCTACCGATAAGTTGATTTAA 1211 ||||| ||||||||||||||||||| ||||||||||||||| || ||||||||||||||| Sbjct 1196 AGAAGGTTACGCCGGAGAATCGAACACATTAGATCGGAGGCCACGGATAAGTTGATTTAA 1255 Query 1212 ATCAACTCTAGATG-TTTAATTAGTTGGGAG-TGGATTTGTGTGTAtttttttG-TATGG 1268 ||||| | |||||| ||||||| |||||| | |||||||||||||||||||||| ||||| Sbjct 1256 ATCAAATATAGATGGTTTAATTGGTTGGGGGGTGGATTTGTGTGTATTTTTTTGGTATGG 1315 Query 1269 GGTCGTATAGTGATTAGGGAAATTAGCTAGGACCTCTTCCAATTAATTAGAGAGCTGCAT 1328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1316 GGTCGTATAGTGATTAGGGAAATTAGCTAGGACCTCTTCCAATTAATTAGAGAGCTACAT 1375 Query 1329 -A--CAGTAGAAAATTACAT-A--TATACGTACATATATAATAT 1366 | ||||||| ||||| || | |||||||||||||||||||| Sbjct 1376 GATACAGTAGATAATTA-ATTACATATACGTACATATATAATAT 1418 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67268730300 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5