BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887308
Length=660
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13950.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 989 0.0
> AT3G13950.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G13266.1);
Has 339 Blast hits to 265 proteins in 12 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 339; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:4604149-4605425
FORWARD LENGTH=854
Length=854
Score = 989 bits (535), Expect = 0.0
Identities = 589/616 (96%), Gaps = 0/616 (0%)
Strand=Plus/Plus
Query 1 ATGGAGATCAACGGTCAAGAAGGTCATCGACACGAAGAATCATCATCAGAGTGGTTCGTA 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGAGATCAACGGTCAAGAAGGTCATCGATACGAAGAATCATCATCAGAGTGGTTCGTA 60
Query 61 AAGTATCTAAAACATCAAGGCGATTGGTTAGAGAAAACTAGAGGGAATCTTATGGTTACA 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGTATCTAAAACGTCAAGGCGATTGGTTAGAGAAAACTAGAGGGAATCTTATGGTTACA 120
Query 121 GCTACGGTTATAGCCGCTATGAGCTTTCAAGCTATGGTTAATCCTCCCGGTGGCGTATGG 180
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 GCTACGGTTATAGCCGGTATGAGCTTTCAAGTTATGGTTAATCCTCCCGGTGGCGTATGG 180
Query 181 CAAAGCGACAATTGTTCTTTCGGAAATCAAACCGGAACCGCACCGGTTTGTAAGGGGAAA 240
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 181 CAAAGTGACAATTGTTCTTTCGGAAATCAAACCGGAACCGCACCGTTTTGTAAGGGGAGA 240
Query 241 GCGGGAACTGCGGTATTGGAGTATGAGAGTTCAAAGCGTATAGCCTATCTTGGGATGGTT 300
|||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||| ||
Sbjct 241 GCGGGAACTGCGGTATTGGAATATGAGAGTTCAAAGCGTATAGCGTATATTGGGATGATT 300
Query 301 ATTAGCAGTACAGTGTCGTTTTCTGCCTCAATGAGTCTCATTCTCCTTGTCATCAGCGGT 360
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 301 ATTAGCAGTACAGTGTCATTTTCTACCTCAATGAGTCTCATTCTCCTTGTCATCAGCGGT 360
Query 361 ATACGACTAAGGAACCGAATGATAATGGCGATCCTCGTAACATTTATGGTAGTGGCGGTT 420
||||||||||||||||| ||||||||||| ||||||| |||||||||||| |||||||||
Sbjct 361 ATACGACTAAGGAACCGGATGATAATGGCTATCCTCGGAACATTTATGGTGGTGGCGGTT 420
Query 421 CTTTGTATATCGGCGGCGTTCTTCTTCGCCATCGTGCTGGTTCAGTCCGATGATCAAATA 480
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 421 CTTTGTATATCAGCGGCGTTCTTCTTCGCCATCGTGCTGGTTCAATCCGACGATCAAATA 480
Query 481 ATTCGTGATATACTACTGATATATGTGGGATTTTGGGTCATATTTCCTGTTTTAATACTT 540
|||||| |||||||| |||| ||||||||||||||||| ||||||||||||| ||||||
Sbjct 481 ATTCGTTATATACTATTGATTTATGTGGGATTTTGGGTTGTATTTCCTGTTTTGATACTT 540
Query 541 TTAATCCAACTTGTTCGATTTATAGGTTGGCTTATTTGTTTCATGTGTTGTTGTTGTTGT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTAATCCAACTTGTTCGATTTATAGGTTGGCTTATTTGTTTCATGTGTTGTTGTTGTTGT 600
Query 601 CAACGTCGGCGACGGT 616
| ||||||||||||||
Sbjct 601 CCACGTCGGCGACGGT 616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31898683345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5