BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887393
Length=594
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43470.1 | Symbols: RPP8, HRT, RCY1 | Disease resistance pro... 422 2e-117
AT5G48620.1 | Symbols: | Disease resistance protein (CC-NBS-LR... 416 1e-115
AT5G35450.1 | Symbols: | Disease resistance protein (CC-NBS-LR... 355 2e-97
> AT5G43470.1 | Symbols: RPP8, HRT, RCY1 | Disease resistance protein
(CC-NBS-LRR class) family | chr5:17462611-17467448 REVERSE
LENGTH=3310
Length=3310
Score = 422 bits (228), Expect = 2e-117
Identities = 264/282 (94%), Gaps = 0/282 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGAAGCATTTGTGTCGTTTGGAGTTGAGAAGCTTTGGGATCTCCTGAGTCGAGAA 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 188 ATGGCTGAAGCATTTGTGTCGTTTGGACTTGAGAAGCTTTGGGATCTCCTGAGTCGAGAA 247
Query 61 TCTGAGCGATTGCAGGGAATTGATGAGCAAGTTGAAGGACTAAAGCGTCAGCTGAGAAGT 120
|| |||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||
Sbjct 248 TCAGAGCGATTGCAGGGAATTGATGGGCAACTTGATGGACTAAAGCGTCAGCTGAGAAGT 307
Query 121 TTAGAGTCGTTGTTGAAAGATGCAGATGCCAAGAAACATGGAAGTGAAAGGGTGAGGAAC 180
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 308 TTACAGTCGTTGTTGAAAGATGCAGATGCCAAGAAACATGGAAGTGATAGGGTGAGGAAT 367
Query 181 TTCTTGGAAGATGTCAAAGACCTTGTTTATGATGCTGAGGATATACTTGAATCCTATGTT 240
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 368 TTCTTGGAAGATGTCAAAGACCTTGTTTTTGATGCTGAGGATATAATTGAATCCTATGTT 427
Query 241 CTGAACAAAAGTAGAGCTAAAGAAAAAGGAATCAAGAAGCAT 282
||||||||| ||| | |||| |||||| |||||||||||
Sbjct 428 CTGAACAAACTTAGTGGAAAAGGAAAAGGGGTCAAGAAGCAT 469
Score = 418 bits (226), Expect = 3e-116
Identities = 287/316 (91%), Gaps = 5/316 (2%)
Strand=Plus/Plus
Query 279 GCATAGTTTAGGGATACAACAAATCATTGATGGTGGTCGTTCGCTGTCTCTTCAGGACAG 338
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 565 GCAGAGTTTTGGGATACAACAAATCATTGATGGTGGTCGTTCGCTGTCTCTTCAGGAAAG 624
Query 339 ACAAAGGGAGCAGAGGGAGATCCGACAAACGT-TCGCTAAAAGTCCTGACCA-CGATCTT 396
|||||||| ||||||||||||||||||||||| || || | ||| |||| | |||||||
Sbjct 625 ACAAAGGGTGCAGAGGGAGATCCGACAAACGTATC-CTGACAGTTCTGAA-AGCGATCTT 682
Query 397 GTTGGGGTGGAGCAGAGTGTTGAAGAATTGGTTGGTCATTTGGTGGAGAATGATAAACAT 456
|| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 683 GTCGGGGTGGAGCAGAGTGTTAAAGAATTGGTTGGTCATTTGGTGGAGAATGATGTTCAT 742
Query 457 CAAGTGGTTTCTATATCTGGGATGGGCGGTATTGGTAAAACGACTTTGGCCAGACAAGTT 516
||||||||||||||| ||||||||||||||||||||||||| ||| |||| ||||||||
Sbjct 743 CAAGTGGTTTCTATAGCTGGGATGGGCGGTATTGGTAAAACCACTCTGGCTAGACAAGTC 802
Query 517 TTTCATCACGACATAGTCCGACGTCATTTTGATGGATTCGCATGGGTCTGTGTTTCGCAA 576
|||||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 803 TTTCATCATGACTTAGTCCGGCGTCACTTTGATGGATTCGCATGGGTCTGTGTTTCCCAA 862
Query 577 CAAGTTTACGCAGAAA 592
||| ||||| ||||||
Sbjct 863 CAA-TTTACACAGAAA 877
> AT5G48620.1 | Symbols: | Disease resistance protein (CC-NBS-LRR
class) family | chr5:19716476-19721452 FORWARD LENGTH=3790
Length=3790
Score = 416 bits (225), Expect = 1e-115
Identities = 265/284 (93%), Gaps = 4/284 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGAAGCATTTGTGTCGTTTGGAG-TTGAGAAGCTTTGGGATCTCCTGAGTCGAGA 59
|||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 544 ATGGCTGAAGGATTTGTGTCGTTTGG-GCTTGAGAAGCTTTGGGATCTCCTGAGTCGAGA 602
Query 60 ATCTGAGCGATTGCAGGGAATTGATGAGCAAGTTGAAGGACTAAAGCGTCAGCTGAGAAG 119
||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 603 ATCAGAGCGATTGCAGGGAATTGATGAGCAACTTGATGGACTAAAGCGTCAGCTGAGAAG 662
Query 120 TTTAGAGTCGTTGTTGAAAGATGCAGATGCCAAGAAACATGGAAGTGAAAGGGTGAGGAA 179
|||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 663 TTTACAGTCGCTGTTGAAAGATGCAGATGCCAAGAAACATGGAAGTGATAGGGTGAGGAA 722
Query 180 CTTCTTGGAAGATGTCAAAGACCTTGTTTATGATGCTGAGGATATACTTGAATCCTATGT 239
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 723 CTTCTTGGAAGATGTCAAAGACCTTGTTTTTGATGCTGAGGATATAATTGAATCCTATGT 782
Query 240 TCTGAACAAAAGTAGAGCTA-AAGAAAAAGGAATCAAGAAGCAT 282
|||||||||| ||||| | ||| |||||| |||||||||||
Sbjct 783 TCTGAACAAACTTAGAGG-AGAAGGAAAAGGGGTCAAGAAGCAT 825
Score = 414 bits (224), Expect = 4e-115
Identities = 289/320 (90%), Gaps = 5/320 (2%)
Strand=Plus/Plus
Query 275 AGAAGCATAGTTTAGGGATACAACAAATCATTGATGGTGGTCGTTCGCTGTCTCTTCAGG 334
||| ||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 917 AGATGCAGAGTTTTGGGATACAACAAATCATTGATGGTGTTCGTTCGCTGTCTCTTCAGG 976
Query 335 ACAGACAAAGGGAGCAGAGGGAGATCCGACAAACGT-TCGCTAAAAGTCCTGACCA-CGA 392
| |||||||||| ||||||||||||||||||||||| || || | ||| |||| | |||
Sbjct 977 AAAGACAAAGGGTGCAGAGGGAGATCCGACAAACGTATC-CTGACAGTTCTGA-AAGCGA 1034
Query 393 TCTTGTTGGGGTGGAGCAGAGTGTTGAAGAATTGGTTGGTCATTTGGTGGAGAATGATAA 452
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 TCTTGTCGGGGTGGAGCAGAGTGTTGAAGAATTGGTTGGTCATTTGGTGGAGAATGATAT 1094
Query 453 ACATCAAGTGGTTTCTATATCTGGGATGGGCGGTATTGGTAAAACGACTTTGGCCAGACA 512
||||||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||
Sbjct 1095 TTATCAAGTGGTTTCTATAGCTGGGATGGGCGGTATTGGTAAAACCACTCTGGCTAGACA 1154
Query 513 AGTTTTTCATCACGACATAGTCCGACGTCATTTTGATGGATTCGCATGGGTCTGTGTTTC 572
||| |||||||| || ||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1155 AGTCTTTCATCATGATTTAGTCCGGCGTCACTTTGATGGATTCGCATGGGTCTGTGTTTC 1214
Query 573 GCAACAAGTTTACGCAGAAA 592
||||||| ||||| | ||||
Sbjct 1215 GCAACAA-TTTACACTGAAA 1233
> AT5G35450.1 | Symbols: | Disease resistance protein (CC-NBS-LRR
class) family | chr5:13667686-13671184 FORWARD LENGTH=3231
Length=3231
Score = 355 bits (192), Expect = 2e-97
Identities = 253/283 (89%), Gaps = 2/283 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGAAGCATTTGTGTCGTTTGGAGTTGAGAAGCTTTGGGATCTCCTGAGTCGAGAA 60
|||||||||| | ||||||||||||||||| |||||||||||| || || | |||||||
Sbjct 124 ATGGCTGAAGGAGTTGTGTCGTTTGGAGTTCAGAAGCTTTGGGCGCTTCTTAATCGAGAA 183
Query 61 TCTGAGCGATTGCAGGGAATTGATGAGCAAGTTGAAGGACTAAAGCGTCAGCTGAGAAGT 120
|| ||||||||| | ||||| |||||||||||||| ||||||||||||||||||||| |
Sbjct 184 TCCGAGCGATTGAATGGAATAGATGAGCAAGTTGATGGACTAAAGCGTCAGCTGAGAGGG 243
Query 121 TTAGAGTCGTTGTTGAAAGATGCAGATGCCAAGAAACATGGAAGTGAAAGGGTGAGGAAC 180
||| ||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 244 TTACAGTCGCTGTTGAAAGATGCAGATGCAAAGAAACATGGAAGTGATAGGGTGAGGAAC 303
Query 181 TTCTTGGAAGATGTCAAAGACCTTGTTTATGATGCTGAGGATATACTTGAATCCTATGTT 240
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 304 TTCTTGGAAGATGTCAAAGACCTTGTTTTTGATGCTGAGGATATAATTGAATCCTATGTT 363
Query 241 CTGAACAAAAGTAGAGCTA-AAGAAAAAGGAATCAAGAAGCAT 282
||||||||| ||||| | ||| |||||| ||||||| |||
Sbjct 364 CTGAACAAACTTAGAGG-AGAAGGAAAAGGGGTCAAGAATCAT 405
Score = 350 bits (189), Expect = 1e-95
Identities = 281/321 (88%), Gaps = 23/321 (7%)
Strand=Plus/Plus
Query 279 GCATAGTTTAGGGAT---ACAACAAATCATTGATGGTGGTCGTTCGCTGTCTCTTCAGGA 335
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 501 GCAGAGTTTAGGGATACAACAACAAATCATTGATGGTGGTCGTTCGCTGTCTCTTCA-G- 558
Query 336 CAGACAAAGGGAGCAGAGGGAGATCCGACAAACG-TTCGCTAAAAGTC-CTGACCA-CGA 392
||| | | |||||||||||||| |||||| ||| |||| || | |||| | |||
Sbjct 559 --GAC--A--TA-CAGAGGGAGATCCGGCAAACGTTTC-CTAACAG-CTCTGA-AAGCGA 608
Query 393 TCTTGTTGGGGTGGAGCAGAGTGTTGAAGAATTGGTTGGTCATTTGGTGGAGAA-TGATA 451
|||||| ||||||||||| |||||||||||||||||||||| | ||||||| || ||||
Sbjct 609 TCTTGTCGGGGTGGAGCAAAGTGTTGAAGAATTGGTTGGTCCTATGGTGGA-AATTGAT- 666
Query 452 AACA-TCAAGTGGTTTCTATATCTGGGATGGGCGGTATTGGTAAAACGACTTTGGCCAGA 510
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 667 AACATTCAAGTGGTTTCTATATCTGGGATGGGCGGTATTGGTAAAACCACTTTGGCCAGA 726
Query 511 CAAGTTTTTCATCACGACATAGTCCGACGTCATTTTGATGGATTCGCATGGGTCTGTGTT 570
||| | |||||||| || ||||||| |||||||||||||||||||||||||||||||||
Sbjct 727 CAAATCTTTCATCATGATTTAGTCCGGCGTCATTTTGATGGATTCGCATGGGTCTGTGTT 786
Query 571 TCGCAACAAGTTTACGCAGAA 591
||||||||| ||||| |||||
Sbjct 787 TCGCAACAA-TTTACTCAGAA 806
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28583229643
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5