BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887428
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37040.1 | Symbols: PAL1, ATPAL1 | PHE ammonia lyase 1 | chr... 725 0.0
AT3G53260.1 | Symbols: PAL2, ATPAL2 | phenylalanine ammonia-lya... 222 3e-57
> AT2G37040.1 | Symbols: PAL1, ATPAL1 | PHE ammonia lyase 1 | chr2:15557376-15560363
REVERSE LENGTH=2530
Length=2530
Score = 725 bits (392), Expect = 0.0
Identities = 436/458 (95%), Gaps = 0/458 (0%)
Strand=Plus/Plus
Query 206 ATTTACTCAAAGTCGTTGACCGTGAACAAGTCTACACATATGCGGATGATCCTTGTAGCG 265
||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1847 ATTTACTCAAAGTTGTAGACCGTGAACAAGTCTACACATACGCGGATGATCCTTGTAGCG 1906
Query 266 CAACGTACCCGTTGATTCAGAAGCTAAGACAAGTTATAGTTGATCATGCTTTGATCAATG 325
||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct 1907 CAACGTACCCGTTGATTCAGAAGCTGAGACAAGTTATTGTTGACCATGCTTTGATCAATG 1966
Query 326 GTGAGAGTGAGAAGAATGCAGTGACTTCAATCTTCCATAAGATTGGAGCTTTCGAGGAGG 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1967 GTGAGAGTGAGAAGAATGCAGTGACTTCAATCTTCCATAAGATTGGAGCTTTCGAGGAGG 2026
Query 386 AGCTTAAAGCGGTGCTTCCGAAAGAAGTGGAGGCAGCAAGAGCGGCATACGACAACGGAA 445
||||||| || ||||| |||||||||||||| ||||||||||| || ||||| |||||||
Sbjct 2027 AGCTTAAGGCAGTGCTACCGAAAGAAGTGGAAGCAGCAAGAGCAGCCTACGATAACGGAA 2086
Query 446 CATCAGCTATCCCGAACAGGATCAAGGAATGTAGGTCGTATCCTTTGTATAGATTCGTGA 505
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2087 CATCGGCTATCCCGAACAGGATCAAGGAATGTAGGTCGTATCCATTGTATAGATTCGTGA 2146
Query 506 GGGAGGAGCTTGGAACAGAGCTTTTGACCGGAGAGAAAGTGACGTCGCCCGGAGAAGAGT 565
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2147 GGGAAGAGCTTGGAACAGAGCTTTTGACCGGAGAGAAAGTGACGTCGCCTGGAGAAGAGT 2206
Query 566 TTGATAAGGTGTTCACGGCGATTTGTGAAGGTAAAATCATTGATCCGATGTTGGAATGTC 625
| || ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2207 TCGACAAGGTTTTCACGGCGATTTGTGAAGGTAAAATCATTGATCCGATGATGGAATGTC 2266
Query 626 TCAACGAGTGGAACGGAGCTCCCATTCCTATATGTTAA 663
|||||||||||||||||||||||||||| |||||||||
Sbjct 2267 TCAACGAGTGGAACGGAGCTCCCATTCCAATATGTTAA 2304
Score = 340 bits (184), Expect = 8e-93
Identities = 198/205 (97%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 3 ACATAACCAAGATGTGAACTCTTTGGGACTAATCTCATCTCGCAAAACTTCTGAAGCTGT 62
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1608 ACATAACCAAGATGTCAACTCTTTGGGACTAATCTCGTCTCGCAAAACTTCTGAAGCTGT 1667
Query 63 TGATATTCTCAAGCTTATGTCAACAACGTTCCTCGTTGCGATTTGTCAAGCTGTGGATTT 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 TGATATTCTCAAGCTTATGTCAACAACGTTCCTCGTTGCGATTTGTCAAGCTGTGGATTT 1727
Query 123 GAGACATTTGGAGGAGAATCTGAAACAGACTGTGAAGAACACTGTTTCTCAAGTGGCCAA 182
||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||| ||
Sbjct 1728 GAGACATTTGGAGGAGAATTTGAGACAGACTGTGAAGAACACTGTCTCTCAAGTGGCGAA 1787
Query 183 GAAAGTTCTTACTACTGGTGTCAAT 207
|||||||||||||||||| ||||||
Sbjct 1788 GAAAGTTCTTACTACTGGAGTCAAT 1812
> AT3G53260.1 | Symbols: PAL2, ATPAL2 | phenylalanine ammonia-lyase
2 | chr3:19744051-19746780 REVERSE LENGTH=2520
Length=2520
Score = 222 bits (120), Expect = 3e-57
Identities = 165/187 (88%), Gaps = 2/187 (1%)
Strand=Plus/Plus
Query 3 ACATAACCAAGATGTGAACTCT-TTGGGACTAATCTCATCTCGCAAAACTTCTGAAGCTG 61
|||||| ||||||||||||||| || || | ||||| ||||| ||||| ||||||||||
Sbjct 1619 ACATAATCAAGATGTGAACTCTCTT-GGTTTGATCTCGTCTCGTAAAACATCTGAAGCTG 1677
Query 62 TTGATATTCTCAAGCTTATGTCAACAACGTTCCTCGTTGCGATTTGTCAAGCTGTGGATT 121
| |||||||| ||||| ||||||||||||||||| || | ||| ||||||||||| ||||
Sbjct 1678 TGGATATTCTTAAGCTAATGTCAACAACGTTCCTTGTGGGGATATGTCAAGCTGTTGATT 1737
Query 122 TGAGACATTTGGAGGAGAATCTGAAACAGACTGTGAAGAACACTGTTTCTCAAGTGGCCA 181
|||||||||||||||||||||||| ||| |||||||||||||| ||||||||||| || |
Sbjct 1738 TGAGACATTTGGAGGAGAATCTGAGACAAACTGTGAAGAACACAGTTTCTCAAGTTGCTA 1797
Query 182 AGAAAGT 188
|||||||
Sbjct 1798 AGAAAGT 1804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32049385786
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5