BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887485
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78290.2 | Symbols: | Protein kinase superfamily protein | ... 1607 0.0
> AT1G78290.2 | Symbols: | Protein kinase superfamily protein
| chr1:29457205-29459142 REVERSE LENGTH=1517
Length=1517
Score = 1607 bits (870), Expect = 0.0
Identities = 980/1033 (95%), Gaps = 8/1033 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAGGTATGAGATAGTGAAGGATATTGGGTCTGGTAATTTCGGAGTAGCAAAGCTT 60
||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 234 ATGGAGAGGTACGAAATAGTGAAGGATATTGGGTCTGGTAACTTCGGAGTAGCAAAGCTT 293
Query 61 GTTCGTGAGAAATTTTCCAAAGAGCTTTTCGCTATTAAGTTCATCGAGAGAGGCCAAAAG 120
|||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 294 GTTCGTGACAAATTTTCCAAAGAGCTTTTCGCTGTTAAGTTCATCGAGCGAGGCCAAAAG 353
Query 121 ATTGATGAACATGTACAAAGAGAAATCATGAATCACAGATCACTCATCCATCCCAATATA 180
|||||||||||||||||||||||||||||||| || || || || |||||||||||||||
Sbjct 354 ATTGATGAACATGTACAAAGAGAAATCATGAACCATAGGTCGCTGATCCATCCCAATATA 413
Query 181 ATAAGATTCAAGGAGGTTTTGTTGACGGCAACACATTTGGCGCTAGTAATGGAATACGCC 240
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 414 ATAAGATTCAAGGAGGTTTTATTGACGGCAACACATTTGGCGTTAGTAATGGAATACGCC 473
Query 241 GCCGGAGGAGAACTGTTCGGAAGAATCTGCAGCGCCGGAAGATTCAGTGAAGACGAGGCA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GCCGGAGGAGAACTGTTCGGAAGAATCTGCAGCGCCGGAAGATTCAGTGAAGACGAGGCA 533
Query 301 AGGTTTTTCTTTCAGCAGCTTATATCAGGAGTTAATTACTGTCACAGTCTTCAAATATGC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 AGGTTTTTCTTTCAGCAGCTTATATCAGGAGTTAATTACTGTCACAGTCTTCAAATATGC 593
Query 361 CATAGAGATTTAAAGCTAGAGAACACTTTG-TTGGATGGAAGTGAAGCGCCGCGCGTAAA 419
|||||||||||||||||||||||||| || ||| ||||||| |||||||| || |||||
Sbjct 594 CATAGAGATTTAAAGCTAGAGAACACGTTACTTG-ATGGAAGCGAAGCGCCACGTGTAAA 652
Query 420 GATTTACGACTTCGGATATTCAAAATCAGGAGTTCTTCATTCGCAACCAAAGACCACTGT 479
||||| |||||| ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 653 GATTTGCGACTTTGGATATTCAAAATCAGGAGTTCTTCATTCGCAACCAAAGACAACAGT 712
Query 480 AGGAACACCTGCTTACATTGCGCCTGAAGTGCTCTCCAAGAAAGAGTATGACGGCAAAAT 539
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 713 AGGAACACCTGCTTACATTGCACCTGAAGTGCTCTCCACGAAAGAGTATGACGGCAAAAT 772
Query 540 CGCTGATGTTTGGTCTTGTGGAGTCACTTTGTATGTCATGCTTGTTGGTGCTTATCCTTT 599
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 773 CGCTGATGTTTGGTCTTGTGGAGTCACTTTGTATGTTATGCTTGTTGGTGCTTATCCTTT 832
Query 600 TGAAGATCCTTCTGATCCTAAAGATTTTCGGAAAACCATCGGTCGGATTCTCAAAGCTCA 659
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 833 TGAAGATCCTTCTGATCCTAAAGATTTTCGGAAGACGATCGGTCGGATTCTCAAAGCTCA 892
Query 660 GTATTCTATTCCTGATTATGTTCGAGTTTCGGATGAATGCAGACATCTTCTCTCTCGGAT 719
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 GTATGCTATTCCTGATTATGTTCGAGTTTCGGATGAATGCAGACATCTTCTCTCTCGGAT 952
Query 720 ATTCATTGCCAACCCTGAAAAGAGAGTAAGGATAGAGGAGATAAAGAATCATTCTTGGTT 779
|||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 953 ATTCGTTGCCAACCCTGAAAAGAGAATAACAATAGAGGAGATAAAGAATCATTCTTGGTT 1012
Query 780 TCTCAAGAATTTGCCG--A----TGTCTGAAGGATCATTGATGATGAATGGTCCATCGAC 833
||||||||| |||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct 1013 TCTCAAGAACTTGCCGGTAGAGATGTATGAAGGATCATTGATGATGAATGGTCCATCGAC 1072
Query 834 TCAAACAGTGGAAGAGATAGTGTGGATCATTGAGGAAGCTCGGAAACCGATCACAGTAGC 893
||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 1073 TCAGACAGTAGAAGAGATAGTGTGGATCATTGAAGAAGCTCGGAAACCTATCACCGTAGC 1132
Query 894 TACTGGACTCTCCGGTGCTGGTGTCTCTGGTGGAAGCAGTAATGGTGCCATTGGAAGTAC 953
|||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1133 TACTGGACTCGCAGGTGCTGGTGGCTCTGGTGGAAGCAGTAATGGTGCCATTGGAAGTAG 1192
Query 954 CAGTATGGATCTCGATGACTTGGACACTGATTTCGACGACATCGATACCGCTGATCTCCT 1013
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1193 CAGTATGGATCTCGATGACTTGGACACAGATTTCGACGACATCGATACCGCTGATCTCCT 1252
Query 1014 TTCCCCTATGTGA 1026
||||||| |||||
Sbjct 1253 TTCCCCTTTGTGA 1265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284381147
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5