BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg887529 Length=609 Score E Sequences producing significant alignments: (Bits) Value AT1G63040.1 | Symbols: | a pseudogene member of the DREB subfa... 832 0.0 > AT1G63040.1 | Symbols: | a pseudogene member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The translated product contains one AP2 domain. There are 17 members in this subfamily including TINY. | chr1:23371327-23372073 FORWARD LENGTH=747 Length=747 Score = 832 bits (450), Expect = 0.0 Identities = 525/562 (93%), Gaps = 2/562 (0%) Strand=Plus/Plus Query 49 TCTTCTTCTTCATCTGGTAATGATATTAATACTTTAATGGCCACTGACGCCGACATCTCT 108 |||||| || || |||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 187 TCTTCTACTGCAAGTGGTAATGATATTAATACTTTAATGGCCACTGACACCGACATCTCT 246 Query 109 CGCCGGAAAAAGCGTCCGGTTTACCGGGGAATTCGTTGCCGGAGTGGAAAATGGGTCTCC 168 |||||||||||| ||||||||| |||||||||||||| ||||||||||||||||| || Sbjct 247 CGCCGGAAAAAGAATCCGGTTTATCGGGGAATTCGTTGTCGGAGTGGAAAATGGGTGTCT 306 Query 169 GAGATCCGAGAGCCTAAGAAGACTACACGTGTTTGGCTTGGAACTTATACGACGCCGGAG 228 || |||||||||||||| |||||||||||||| |||||||| |||||| ||||||||||| Sbjct 307 GAAATCCGAGAGCCTAAAAAGACTACACGTGTCTGGCTTGGGACTTATCCGACGCCGGAG 366 Query 229 ATGGCTGCGGCCGCCTATGACGTGGCGGCTTTAGCTCTTAAAGGTGGAGACAC-CGTCTT 287 |||||||| ||||| |||||||||||||| ||||||||||||||||||||||| | |||| Sbjct 367 ATGGCTGCTGCCGCATATGACGTGGCGGCGTTAGCTCTTAAAGGTGGAGACACTC-TCTT 425 Query 288 GAACTTCCCGGATTCCGTGGGATCTTACCCCAGTCCCCTTTCCTCTTCCGCAGCTCATAT 347 |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| Sbjct 426 GAACTTCCCGGATTCCCTGGGATCTTACCCCATTCCCCTTTCCTCTTCCGCAGCTCATAT 485 Query 348 CAGATGCGCTGCAGCCGCAGCTGCTGCGGCTAGGGGTGCGGCTGCAGCGGCCGTGAAGGG 407 ||||||||||||||| || ||||||||| ||||||||||||||| |||||||||||||| Sbjct 486 CAGATGCGCTGCAGCTGCGGCTGCTGCGACTAGGGGTGCGGCTGGAGCGGCCGTGAAGGT 545 Query 408 AGGTGAAAAGAAGGAAGAGGAAGTTTGTGATACGGCGGGATCTTCAACTATGGGGTTTGT 467 |||| ||||||||||||| |||||| ||||||||||| ||||||||||||||||||||| Sbjct 546 AGGTCAAAAGAAGGAAGATAAAGTTTATGATACGGCGGAATCTTCAACTATGGGGTTTGT 605 Query 468 GGATGAAGAAGAGCTATTGAACATGCCTGGTTTGCTAGCGGATATGGCCAAAGGGATGAT 527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 606 GGATGAAGAAGAGCTATTGAACATGCCTGGTTTGCTAGCGGATATGGCCAAAGGGATGAT 665 Query 528 GGTGGCTCCTCCGTGGATGGGATCTCCTCCGTCAGATGATTCGCCGGAAAATTCTGATGG 587 ||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||||||| Sbjct 666 GGTGGCTCCACCGTGGATGGGATCTCCACCGTCAGATGATTCGCCAGAGAATTCTGATGG 725 Query 588 AGAGAGCTTGTGGAGCTATTGA 609 |||||||||||||||||||||| Sbjct 726 AGAGAGCTTGTGGAGCTATTGA 747 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29336741848 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5