BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887546
Length=519
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34720.1 | Symbols: NF-YA4 | nuclear factor Y, subunit A4 | ... 815 0.0
AT1G30500.2 | Symbols: NF-YA7 | nuclear factor Y, subunit A7 | ... 291 6e-78
> AT2G34720.1 | Symbols: NF-YA4 | nuclear factor Y, subunit A4
| chr2:14649767-14651627 REVERSE LENGTH=958
Length=958
Score = 815 bits (441), Expect = 0.0
Identities = 494/519 (95%), Gaps = 6/519 (1%)
Strand=Plus/Plus
Query 1 ATGACTTCTTCAGTACATGAGCTCTCTGATAACAATGAAAGTCATGGGAAGAAAGAACGT 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 111 ATGACTTCTTCAGTACATGAGCTCTCTGATAACAATGAAAGTCATGCGAAGAAAGAACGT 170
Query 61 CCAGATTCCCAAACAAGACCACAGATTCCTTCAGGACGAAGTTCGGAATCTATTGATACA 120
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 171 CCAGATTCCCAAACCCGACCACAGGTTCCTTCAGGACGAAGTTCGGAATCTATTGAT--- 227
Query 121 ACAAACTCTGTCTACTCAGAGCCCATGGCACATGGGCTATACCCGTATCCAGATCCTTAC 180
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 228 ACAAACTCTGTCTACTCAGAGCCCATGGCACATGGATTATACCCGTATCCAGATCCTTAC 287
Query 181 TACAGAAGCATCTTTTCACAGCAAGCATATCTTCCACATCCCTATCCTGGGGTCCAATTG 240
||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 288 TACAGAAGCGTCTTTGCACAGCAAGCGTATCTTCCACATCCCTATCCTGGGGTCCAATTG 347
Query 241 CAGTTAATGGGAATGCAACAGCCAGGAGTTCCATTGCAATGCGATGCAGTCGAGGAACCT 300
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 348 CAGTTAATGGGAATGCAGCAGCCAGGAGTTCCATTGCAATGTGATGCAGTCGAGGAACCT 407
Query 301 GTTTTTGTTAACGCAAAGCAATACCACGGTATACTCAGGCGCAGGCAATCCCGGGCAAAA 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 408 GTTTTTGTTAACGCAAAGCAATACCATGGTATACTCAGGCGCAGGCAATCCCGGGCAAAA 467
Query 361 CTTGAGGCACGAAACAGAGCCATCAAGGCAAAGAAGCCATACATGCATGAATCTCGGCAT 420
|||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 468 CTTGAGGCACGAAATAGAGCCATCAAAGCAAAAAAGCCATACATGCATGAATCTCGGCAT 527
Query 421 TTACATGCGATAAGACGGCCAAGAGGATGTGGCGGACGGTTTCTCAATGCCAAGAAGAAA 480
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||
Sbjct 528 TTACATGCGATAAGACGGCCAAGAGGATGTGGTGGCCGGTTTCTCAATGCCAAGAAGGAA 587
Query 481 AATGGAGACCACAAGGAGGAAGAGGAGGAGACAACCTCT 519
|||||||||||||||||||| ||||||| ||||||||
Sbjct 588 AATGGAGACCACAAGGAGGAGGAGGAGG---CAACCTCT 623
> AT1G30500.2 | Symbols: NF-YA7 | nuclear factor Y, subunit A7
| chr1:10804450-10806319 REVERSE LENGTH=970
Length=970
Score = 291 bits (157), Expect = 6e-78
Identities = 391/498 (79%), Gaps = 39/498 (8%)
Strand=Plus/Plus
Query 1 ATGACTTCTTCAGTACATGAGCTCTCTGATAACAATGAAAGTCATGGGAAGAAAGAAC-G 59
|||||||||||| | |||||||| |||||||||| || |||||||| |||| |||||| |
Sbjct 112 ATGACTTCTTCAATCCATGAGCTTTCTGATAACATTGGAAGTCATGAGAAGCAAGAACAG 171
Query 60 TCCAGATTCCCA-AACAAGACCA-CAGATTCCTTCAGGACGAAGTTCGGAATCTATTGAT 117
|||||| || | | |||| || || ||||| | | ||| || ||||| |||| |
Sbjct 172 -AGAGATTCTCATTTCCA-ACCACCA-ATCCCTTCTGCAAGAAATTATGAATCAATTGTT 228
Query 118 ACAA---CA---AACTCTG--TC---TACT-CAGAGCCCATGGCACATGGGCTATACCCG 165
|||| | |||| | | ||| || | ||||||||| ||| | ||| ||
Sbjct 229 ACAAGTTTAGTCTACTCAGACCCGGGGACTACAAATTCCATGGCACCTGGACAATATCCA 288
Query 166 TATCCAGATCCTTACTACAGAAGCATCTTTTCACAGCAAGCATATCTTCCACATCCCTAT 225
|||||||||||||||||||||||||| ||| ||| | || | |||||| || |||
Sbjct 289 TATCCAGATCCTTACTACAGAAGCATATTTGCAC--C--GC----C-TCCACAACCGTAT 339
Query 226 -CCTGGGGTCCAAT-TGCAGTTAATGGGAATGCAACAGCCAGGAGTTCCATTGCAATGC- 282
|| ||||| | || | ||||| |||||| |||| || | ||| ||||| || | || |
Sbjct 340 ACC-GGGGTAC-ATCTACAGTTGATGGGAGTGCAGCAACAAGGCGTTCCTTTACCAT-CT 396
Query 283 GATGCAGTCGAGGAACCTGTTTTTGTTAACGCAAAGCAATACCACGGTATACTCAGGCGC 342
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 397 GATGCAGTCGAGGAACCTGTTTTTGTTAACGCAAAGCAATACCACGGTATACTAAGGCGC 456
Query 343 AGGCAATCCCGGGCAAAACTTGAGGCAC-GAA-ACAGAGCCATCAAGGCAAAG-AAGCCA 399
|| ||||| | |||| ||||||| | | ||| | | || ||||||| || | |||||
Sbjct 457 AGACAATCAAGAGCAAGACTTGAGTCTCAGAATA-A-AGTCATCAAGTCAC-GTAAGCCG 513
Query 400 TACATGCATGAATCTCGGCATTTACATGCGATAAGACGGCCAAGAGGATGTGGCGGACGG 459
|| ||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 514 TATTTGCATGAATCTCGGCATTTGCATGCGATAAGACGACCAAGAGGATGTGGCGGGCGG 573
Query 460 TTTCTCAATGCCAAGAAG 477
||||| ||||||||||||
Sbjct 574 TTTCTAAATGCCAAGAAG 591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24815668618
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5