BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg887585 Length=705 Score E Sequences producing significant alignments: (Bits) Value AT5G50360.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 987 0.0 > AT5G50360.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:20505180-20506338 REVERSE LENGTH=1159 Length=1159 Score = 987 bits (534), Expect = 0.0 Identities = 667/727 (92%), Gaps = 26/727 (4%) Strand=Plus/Plus Query 1 GGATCGGCGTTAACGAACGTTTCGTCGAAATCACGGAGAGGTAAGAGAAAATATTCAAAG 60 ||||||| | |||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 184 GGATCGGTGATAACTAACGTTTCGTCGAGATCACGGAGAGGTAAGAGAAAATATTCAAAG 243 Query 61 GAGAATAACAGTAGCAGTAGCGGATCCGTTAATAGTAACGGTAACAGCAGACGACAGAGA 120 |||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 244 GAGAATAATAGTAGCAGTACCGGATCCGTTAATAGTAACGGTAACAGCAAACGACAGAGA 303 Query 121 AACGAAGAGACGAAGAACGGATCTGGT-GTCGGTGGAGAGATCGTGACGTTGCCTCTTCT 179 ||||| ||||||||||||||||||||| || ||| ||||||||||||||||||||||||| Sbjct 304 AACGATGAGACGAAGAACGGATCTGGTGGT-GGTAGAGAGATCGTGACGTTGCCTCTTCT 362 Query 180 CCCGGAGACTCCTGAGAAGAAAGAGTCGCCGTTGAAGGCTGTGGCGGTGCCGGAGCTAGG 239 || |||||||||||||||||||| ||||||||||||||| ||||| ||||||| |||| Sbjct 363 TCCAGAGACTCCTGAGAAGAAAGACTCGCCGTTGAAGGCTAAGGCGGCGCCGGAGTTAGG 422 Query 240 TGCGGCGTCGTTGTGGC-------T--T-A---A-C----TCTAACAGACGTTATCAGAC 281 ||||||| ||||||||| | | | | | | |||||||||||||||||| Sbjct 423 TGCGGCGGCGTTGTGGCTGAGTTTTAATGACGGAGCTAGTTATAACAGACGTTATCAGAC 482 Query 282 GGAGTTAATGACGGAAACGGTTGTGTCGTCGGTGTTGACGGTGGAGTGTGTAACGGAGAG 341 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 483 AGAGTTAATGACGGAAACGGTTGTGTCGTCGTTGTTGACGGTGGAGTGTGTAACGGAGAG 542 Query 342 ATTGATGGAGGGAGAGTATGAGTTAGGGTGTACGGACGATGAGATTAAGATGAAT-TTAG 400 ||||||||||||||||||||||||||||||||||||||| |||| ||||||||| || | Sbjct 543 ATTGATGGAGGGAGAGTATGAGTTAGGGTGTACGGACGAGGAGAGGAAGATGAATCTT-G 601 Query 401 AGAGAGACACGTGTCCCGGTTTTATATCGGACGGTTTAGGGAGAGTCATTTGGACGAACC 460 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 602 AGAGAGACACGTGTCCTGGTTTTATATCGGACGGTTTAGGGAGAGTCATTTGGACGAA-C 660 Query 461 GG-TCGTACCGGGAATTGGTGGTTGGGAAAGATCATGAGCAGTGTGGTAAGATGAGTGTG 519 || || ||| | || |||||||||||||||||||||||||||||| |||||||||||||| Sbjct 661 GGTTCTTACAGAGAGTTGGTGGTTGGGAAAGATCATGAGCAGTGTAGTAAGATGAGTGTG 720 Query 520 TGG-TTAGTGATGAAGGAGATGCCTTTGGTAACGTACCGGACTTTTACGTGTAGAATGAG 578 ||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 721 TGGCTT-GTGATGAAGGAGAAGCCTTTGGTAACGTACCGGACTTTTACGTGTAGAATGAG 779 Query 579 ATTGCAGTACACGTGTCGTGATAAGGAGGTGAGTTCGATTACTTCGTTCTGTGATGTTTG 638 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 ATTGCAGTACACGTGTCGTGATAAGGAGGTGAGTTCGATTACTTCGTTCTGTGATGTTTG 839 Query 639 GAGGATGAGTGACGGTGGCTTTGCTTGGCGGCTTGATGTTGATGCTGCTCTTTGTCTCGG 698 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || || Sbjct 840 GAGGATGAGTGACGGTGGCTTTGCGTGGCGGCTTGATGTTGATGCTGCACTTTGCCTTGG 899 Query 699 ACGGTGA 705 ||||||| Sbjct 900 ACGGTGA 906 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34159219960 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5