BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg887641 Length=3669 Score E Sequences producing significant alignments: (Bits) Value AT5G11250.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 896 0.0 AT3G25510.1 | Symbols: | disease resistance protein (TIR-NBS-L... 472 1e-131 AT3G44630.3 | Symbols: | Disease resistance protein (TIR-NBS-L... 377 3e-103 AT3G44480.1 | Symbols: RPP1, cog1 | Disease resistance protein ... 368 2e-100 AT5G44510.1 | Symbols: TAO1 | target of AVRB operation1 | chr5:... 366 7e-100 AT5G38340.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 298 3e-79 AT3G03855.1 | Symbols: | pseudogene of disease resistance prot... 241 5e-62 AT3G44400.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 215 3e-54 > AT5G11250.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR class) | chr5:3587978-3591960 REVERSE LENGTH=3570 Length=3570 Score = 896 bits (485), Expect = 0.0 Identities = 815/971 (84%), Gaps = 35/971 (4%) Strand=Plus/Plus Query 11 CTTCTTC-TTTTATCCTTACCACTGTTGCTGCTGCAATTA-GCTTCTTCACGCTTCTT-A 67 ||||||| |||| |||||||||||||||| ||||||| || |||||||||| ||| || | Sbjct 5 CTTCTTCGTTTT-TCCTTACCACTGTTGCAGCTGCAA-TAGGCTTCTTCACCCTT-TTGA 61 Query 68 GAAAACTCAGATGCCATCAAGAAGATGACAAAGAAAATAA-T--Acttcttct-tctact 123 |||||||||||| ||||| | ||| |||||||||| || | ||||||| | ||| || Sbjct 62 GAAAACTCAGATTCCATC---ATGATAACAAAGAAAAGAAGTCAACTTCTT-TATCTCCT 117 Query 124 tcattatctccatcttctctgtctccttcatc---tcttcaatcgtcttTGGATCGCATC 180 |||| ||||||||||||| ||||||||||||| || || | | |||| | | ||||| Sbjct 118 TCATCATCTCCATCTTCTTTGTCTCCTTCATCAGTTCCTCCACCTTCTTCGTCTTGCATC 177 Query 181 TGGACACACCATGTGTTTCCAAGTTTCCGAGGGGAAGATGTCCGTAGAGACTTTCTTAGT 240 ||||||||||| || ||||| || ||| | |||||||||||||||||||||||||| ||| Sbjct 178 TGGACACACCAAGTCTTTCCCAGCTTCAGCGGGGAAGATGTCCGTAGAGACTTTCTCAGT 237 Query 241 CACATTCAGATGGAGTTTCAAAGAATGGGAATCACACCGTTCATTGATAATGAGATCAAG 300 ||||||||||||||||||||||||||||||||||| || ||| ||||||||||||| || Sbjct 238 CACATTCAGATGGAGTTTCAAAGAATGGGAATCACTCCATTCGTTGATAATGAGATTAAA 297 Query 301 AGAGGACAATCCATCGGTCCTGAACT-CATTCGAGCAATTAGAGAATCCAAGATCGCAAT 359 |||||| |||||||||||||||| || | | || || ||||||| || ||||| ||||| Sbjct 298 AGAGGAGAATCCATCGGTCCTGAGCTTC-TGCGGGCTATTAGAGGGTCTAAGATAGCAAT 356 Query 360 TATCTTGCTGTCAAGAAACTACGCTTCTTCGAGCTGGTGTCTTGACGAATTGGCGGAGAT 419 ||||||||| || || ||||| |||||||| | ||||||||||||||| ||| |||||| Sbjct 357 TATCTTGCTCTCTAGGAACTATGCTTCTTCAAAATGGTGTCTTGACGAACTGGTGGAGAT 416 Query 420 TATGAAGTGCAGGGAAGAAT-TGGGTCAAACAGTTTTGGCTGT-TTTCTATAAAGTGGAT 477 |||||| ||||| ||||| | ||| |||||| || |||| | ||| || ||||||||| Sbjct 417 TATGAAATGCAGAGAAGAGTATGG-TCAAACTGTGATGGCCATATTT-TACAAAGTGGAT 474 Query 478 CCATCTGATGTAAAGAAGCTGACCGGAGATTTTGGAAAAGTCTTCaaaaaaaCATGTGCC 537 || ||||||||||| || |||||||||||||| || |||||||| | |||||| |||||| Sbjct 475 CCTTCTGATGTAAAAAATCTGACCGGAGATTTCGGGAAAGTCTTTAGAAAAACTTGTGCC 534 Query 538 GGTAAAACAAAAGA-GCACGTTGGGAGATGGAGACAAGCTTTGGCAAATGTCGCCACAAT 596 |||||| |||| || | || ||||||||||||||||||||| || ||| || |||||| | Sbjct 535 GGTAAACCAAA-GAAGGACATTGGGAGATGGAGACAAGCTTGGGAAAAAGTGGCCACAGT 593 Query 597 CGCTGGTTACCATTCGACCAACTGGGATAATGAAGCGGCCATGATTaaaaaaaTCGCTAC 656 |||||||||||||| | ||||||||||||||||||||||||||| || |||||||| || Sbjct 594 AGCTGGTTACCATTCAATCAACTGGGATAATGAAGCGGCCATGATCAAGAAAATCGCCAC 653 Query 657 TGATATTTCGAACACGTTGAATAATTCTGCATCAT-CAAGTGATTTCGATAGGCTGGTTG 715 |||||||||||||| |||| |||||| | || | || |||||||||| || | |||| Sbjct 654 TGATATTTCGAACATATTGATTAATTCCAC-TCCTTCACGTGATTTCGACGGGTTAGTTG 712 Query 716 GAATGAGAGAACATTTAGAGAAGATGGAACCGTTATTATGTTTAGACTCAGATGAAGTGA 775 | ||||||| |||||||| |||||| ||||||| ||||| ||||| |||| ||||| | Sbjct 713 GGATGAGAGCTCATTTAGAAAAGATGAAACCGTTGTTATGCCTAGACACAGACGAAGTAA 772 Query 776 GGCTGATTGGGATTTGGGGTCCTTCTGGGATTGGGAAGACGACCATCGCCAGAGTTATAT 835 || | |||||||||||||||||| |||||||||||||||| || || ||||||||| ||| Sbjct 773 GGATAATTGGGATTTGGGGTCCTCCTGGGATTGGGAAGACCACAATTGCCAGAGTTGTAT 832 Query 836 ACAACAAACTCTCCGGCAGTTTTCAACTGAGTGTCTTTATGGA-ATCTATCGAAGCAAAA 894 ||||| |||||||| |||||| |||||||||||||||||||| | |||| ||||||| Sbjct 833 ACAACCAACTCTCCCACAGTTTCCAACTGAGTGTCTTTATGGAGAA-TATCAAAGCAAAC 891 Query 895 TATACAAGACCA--TGT-TCCGATGACTATAGTGCCAAGTTGCAGTTACAACAGCA-GTT 950 ||||| |||||| || ||||||||||| ||||| |||||||| |||||||| | ||| Sbjct 892 TATACCAGACCAACTGGCTCCGATGACTACAGTGCAAAGTTGCAATTACAACAA-ATGTT 950 Query 951 TATG-CTAAAA 960 |||| || ||| Sbjct 951 TATGTCTCAAA 961 Score = 549 bits (297), Expect = 7e-155 Identities = 615/763 (81%), Gaps = 44/763 (6%) Strand=Plus/Plus Query 2585 ATTGCTCAAATCTGGTAAAGC-TCCCCTTTTCTATTGGAAACCTTCAGAAGTTGCA--AA 2641 |||||||||||||||| ||| ||| | ||||||| |||||||||||||||||||| || Sbjct 2624 ATTGCTCAAATCTGGTGGAGCTTCCTC-TTTCTATAGGAAACCTTCAGAAGTTGCAGGAA 2682 Query 2642 CTTTGACCTTACGAGGATGCTCTAAACTAGAAGATCTT-CCAGCCAACATCAAATTGGAA 2700 |||| ||| |||||||||||| ||||| |||||| ||| ||||||||| |||||| Sbjct 2683 --TTGATTTTAAAAGGATGCTCTAAGCTAGAGGATCTTCCCA-TCAACATCAACTTGGAA 2739 Query 2701 TCTCTTTG-CTTACTTGAT-CTCACTGATTGCTTGC-TGTTGAAAAGGTTTCCTGAGATC 2757 ||| || | | |||||| | |||| ||||||| | | ||||||||||||||||||||||| Sbjct 2740 TCT-TTGGACATACTTG-TGCTCAATGATTGC-TCCATGTTGAAAAGGTTTCCTGAGATC 2796 Query 2758 TCCACAAACGTTGA-AACTCTCTATCTCAAAGGAACCACAATAGAAGAAGTCCCT-TCAT 2815 || || |||||| | | ||||||||||| |||||| ||||||||||||| ||| || | Sbjct 2797 TCTACTAACGTT-AGAGCTCTCTATCTCTGTGGAACCGCAATAGAAGAAGTGCCTCTC-T 2854 Query 2816 CAATCAAATCTTGGTCTCGTC-TCACTTACTTGCAT-ATGTCATACAGTGAAAATCTCA- 2872 | |||| || ||| | |||| | | | | |||| | ||||||||| ||| ||||| | Sbjct 2855 CGATCAGGTCATGGCCCCGTCTTGA-TGAATTGC-TGATGTCATACTTTGATAATCT-AG 2911 Query 2873 T-GAACTTTCCTCATGCTT-TTGACATCATCACAAGGCTGTACGTGACCAATACAGAGAT 2930 | ||| || ||||||| || ||||||||||||||| ||| || ||| | || ||| || Sbjct 2912 TGGAA-TTCCCTCATG-TTCTTGACATCATCACAAATCTGGACTTGAGCGGTAAAGAAAT 2969 Query 2931 ACAAGAGCTTCCCCCA-TGGGTCAAGA-AATTCTCTCAT-TTAAGAGAACTCATTCTCAA 2987 ||||||| |||| ||| | | |||||| || | |||| | || ||| |||||| ||||| Sbjct 2970 ACAAGAGGTTCCTCCACT-GATCAAGAGAA-TATCTCGTCTTCAGA-CACTCATACTCAA 3026 Query 2988 GGGATGCAAAAAGCTGGTATCACTCCCACAGATTCCAGATTCCATCACTTACATAGATGC 3047 ||| | || |||| |||||||||||||||||||||||||||| | | | || ||||| Sbjct 3027 GGGGTACAGAAAGGTGGTATCACTCCCACAGATTCCAGATTCTTTAAAATGGATTGATGC 3086 Query 3048 AGAAGATTGTGAGTCCCTGGAGAAACTAGATTGCTCCTTTCACGATCCAAAGATT-CGGG 3106 ||||||||||||||| |||||| ||||||||||||||||||| ||||| ||||| | Sbjct 3087 TGAAGATTGTGAGTCCTTGGAGAGACTAGATTGCTCCTTTCACAATCCAGAGATTACTC- 3145 Query 3107 TCAACTTTGCTAAGTGCTTCAAACTGAATCAAGAAGCCAGAGACCTCATCATCCAGACAC 3166 || ||||| ||||||||| ||||| ||||||||||| |||||||| ||||||||||||| Sbjct 3146 TCTTCTTTGGTAAGTGCTTTAAACTTAATCAAGAAGCAAGAGACCTAATCATCCAGACAC 3205 Query 3167 CAACTAGTAATTATGC-GATCTTACCCGGCAGAGAAGTGCCTGCATACTTCACTCACCAA 3225 | |||| || | || | ||||||| || ||||| |||||||||||||||||||||| | Sbjct 3206 CGACTA--AACAA-GCAG-TCTTACCTGGTAGAGAGGTGCCTGCATACTTCACTCACCGA 3261 Query 3226 TCTGCTACTGGAGGTTCCTTGACAATCAAGCTGAACGAGAAGCCTCTTCCTACATCCATG 3285 | | | ||| ||||| |||||||| ||| |||| |||| ||||||||||||||| ||| Sbjct 3262 GC-G--AGTGGGGGTTCATTGACAATTAAGTTGAATGAGAGGCCTCTTCCTACATCTATG 3318 Query 3286 CGGTTTAAGGCTTGCATTTTGCTGGTTCGTAAAGGTGACGATG 3328 | | |||||||||||| ||||| ||||||| |||||| ||| Sbjct 3319 AGATATAAGGCTTGCATCTTGCTAGTTCGTATTGGTGACTATG 3361 Score = 329 bits (178), Expect = 9e-89 Identities = 258/296 (87%), Gaps = 8/296 (3%) Strand=Plus/Plus Query 958 AAAGACAAGAAAGTTCTTGTTGTTCTTGATGGTGTGGACCAGTCAATGCAACTAGATGCC 1017 ||||||||||||||||| || ||||||||||| ||| |||||||| | ||||||||||| Sbjct 1018 AAAGACAAGAAAGTTCTGGTCGTTCTTGATGGGGTGAACCAGTCAGTACAACTAGATGCG 1077 Query 1018 ATGGCAAAAGAAACTTGGTGGTTTGGTCCTGGGAGTCGGATTATTATCACAACACAAGAT 1077 ||||| |||||| ||||||||||||||||||||||||| || || || |||||||||||| Sbjct 1078 ATGGCGAAAGAAGCTTGGTGGTTTGGTCCTGGGAGTCGAATCATCATTACAACACAAGAT 1137 Query 1078 C-GAAAGCTTTTCAGGGCACATGGGATTAACCATATTTACAAGGTTGATTTTCCATCAAC 1136 | |||| ||||| || ||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 1138 CAGAAA-CTTTTTAGAGCACATGGGATTAACCATATTTACAAGGTGGATTTTCCACCAAC 1196 Query 1137 TGAAGAGGCCCTTCAAATCTTGTGCAAATATGCTTTTGGTCAAAACTCCCCTACACATGG 1196 ||||||||| ||||||||||| |||| ||||||||||||||||| ||||||| | |||| Sbjct 1197 TGAAGAGGCTCTTCAAATCTTCTGCATGTATGCTTTTGGTCAAAATTCCCCTAAAGATGG 1256 Query 1197 TTTTGAAGAAC-TTGCTTGGGAAGTTACACAA-CTTGCTGGTGAACTTCC-TTTGG 1249 |||| | |||| |||||||| |||| | | || ||||| ||| ||| ||| ||||| Sbjct 1257 TTTTCA-GAACCTTGCTTGGAAAGTAATA-AATCTTGCCGGT-AACCTCCCTTTGG 1309 Score = 82.4 bits (44), Expect = 3e-14 Identities = 97/122 (80%), Gaps = 5/122 (4%) Strand=Plus/Plus Query 3387 AGAGCATATGTACGTATTTGAAGTCAAAGCAG-ATGTGACTTCCAGCGAGCTTGTCTTTG 3445 ||||||| ||||| ||| ||| || ||| || | ||||||||||||||||||||||||| Sbjct 3447 AGAGCATCTGTACACATTCGAAATCGAAG-AGAAGGTGACTTCCAGCGAGCTTGTCTTTG 3505 Query 3446 AGTTCAAGATCGACAA---TAAGAATTGGAAGATAAAAGAATGTGGGGTATTCCAACTCT 3502 |||||||| |||| || ||| | |||||||| |||||| ||| || |||||| | Sbjct 3506 AGTTCAAGGTCGAGAACGGTAACCACTGGAAGATTGGAGAATGCGGGTTACGCCAACTAT 3565 Query 3503 CG 3504 || Sbjct 3566 CG 3567 > AT3G25510.1 | Symbols: | disease resistance protein (TIR-NBS-LRR class), putative | chr3:9260838-9268797 REVERSE LENGTH=5946 Length=5946 Score = 472 bits (255), Expect = 1e-131 Identities = 581/733 (79%), Gaps = 43/733 (6%) Strand=Plus/Plus Query 2587 TGCTCAAATCTGGTAAAGCTCCCCTTTTCTATTGGAAACCTTCA-GAAGTTGCAAACTTT 2645 |||||||||||||| ||||| |||| |||||||||||||||||| | ||| ||||| Sbjct 2875 TGCTCAAATCTGGTGAAGCTTCCCTCTTCTATTGGAAACCTTCATCTA-TTGTTCACTTT 2933 Query 2646 GACCTTACG-AGGATGCTCTAAA-CTAGAAGATCTTCC-AGCCAACATCAAATTGGAATC 2702 || || | | ||||| | ||| |||| | |||||| || ||| ||||| ||| |||| Sbjct 2934 GA-GTTTGGCAAGATGC-CAAAAGTTAGAGGCTCTTCCGAG-CAATATCAACTTGAAATC 2990 Query 2703 TCTTTG--CTTACTTGATCTCACTGATTGCTTGCTGTTGAAAAGGTTTCCTGAGATCTCC 2760 || ||| | |||||||||||| ||||||| || ||| ||||| ||||||||||| ||| Sbjct 2991 TC-TTGAAC-GACTTGATCTCACCGATTGCTCGCAGTTTAAAAGTTTTCCTGAGATTTCC 3048 Query 2761 ACAAACGTTGAA-ACTCTCTATCTCAAAGGAACCACAATAGAAGAAGTCCCTTCATCAAT 2819 |||||| ||||| | |||||||| | |||||| || |||||||||| ||||||||||| Sbjct 3049 ACAAACATTGAATGC-CTCTATCTTGATGGAACCGCAGTAGAAGAAGTGCCTTCATCAAT 3107 Query 2820 CAAATCTTGGTCTCGTCTCACT-TACTTGCATATGTCATACAGT-GAAAATCTC-ATGAA 2876 ||| ||||||||| | |||||| | ||||||||||||||| | ||||| ||| | ||| Sbjct 3108 CAAGTCTTGGTCTAGACTCACTGT-GTTGCATATGTCATAC-TTCGAAAAACTCAAGGAA 3165 Query 2877 CTTTC-CTCATGCTT-TTGACATCATCACAAGGCT-GTACGTGACCAATACAGAGATACA 2933 ||| | |||| || | |||||||| || |||| | | | | | | ||| ||||| Sbjct 3166 --TTCTCGCATG-TTCTAGACATCATAACGTGGCTAG-A-AT-TCGGAGA-AGATATACA 3218 Query 2934 AG-AGCTTCCCCCATGGGTC-AAGAAATTCTCTCATTTAAGA-GAACTCATTCTCAAGGG 2990 || || || | |||||| || |||||| |||||| | | | | | ||| | ||| | Sbjct 3219 AGAAG-TTGCTCCATGGATCAAAGAAA-TCTCTCGTCT-ACATGGACTTAGACTCTACAA 3275 Query 2991 ATGCAAAAAGCTGGTATCACTCCCACAGATTCCAGATTCCATCACT-TA-CATAGATGCA 3048 ||||| |||||| |||||||||||||| ||||||| | | || || || |||| |||| Sbjct 3276 ATGCAGAAAGCTTTTATCACTCCCACAGCTTCCAGAAT-C-TCTCTCTATCATAAATGCT 3333 Query 3049 GAAGATTGTGAGTCCCTGGAGAAACTAGATTGCTCCTTTC-ACGATCCAAAGATTCGGGT 3107 |||| |||||||||| |||||| ||||||||||| ||| | || |||| || || | Sbjct 3334 GAAGGTTGTGAGTCCTTGGAGACACTAGATTGCT-CTTACAACAATCCCTTGAGTCTTCT 3392 Query 3108 CAACTTTGCTAAGTGCTTCAAACTGAATCAAGAAGCCAGAGACCTCATCATCCAGACACC 3167 || |||||||||||||||||||||||||||||||| |||||| |||||||||||| ||| Sbjct 3393 TAATTTTGCTAAGTGCTTCAAACTGAATCAAGAAGCGAGAGACTTCATCATCCAGATACC 3452 Query 3168 AACTAGTAATTATGCGATCTTACCCGGCAG-AGAAGTGCCTGCATACTTCACTCACCAAT 3226 || |||||| ||||| |||||||||| | |||||||||||||||||||||||||| | Sbjct 3453 GACCAGTAATGATGCGGTCTTACCCGGT-GCAGAAGTGCCTGCATACTTCACTCACCGAG 3511 Query 3227 CTGCTACTGGAGGTTCCTTGACAATCAAGCTGAACGAGAAGCCTCTTCCTACATCCATGC 3286 || ||||||||| ||||||||| |||||| | || |||| |||| || ||||||||||| Sbjct 3512 CTACTACTGGAGCTTCCTTGACCATCAAGTTAAATGAGAGGCCTATTTCTACATCCATGA 3571 Query 3287 GGTTTAAGGCTTG 3299 | ||||||||||| Sbjct 3572 GATTTAAGGCTTG 3584 > AT3G44630.3 | Symbols: | Disease resistance protein (TIR-NBS-LRR class) family | chr3:16195984-16200595 FORWARD LENGTH=4031 Length=4031 Score = 377 bits (204), Expect = 3e-103 Identities = 577/751 (77%), Gaps = 50/751 (7%) Strand=Plus/Plus Query 2587 TGCTCAAATCTGGTAAAGCTCCCCTT-TTCTATTGGAAACCTTCAGAAGTTGCAAACT-T 2644 |||||||||||||| |||| |||| |||||||||||||||||| || ||| | | | Sbjct 2722 TGCTCAAATCTGGTGGAGCT-TCCTTCTTCTATTGGAAACCTTCAAAAATTGTTTA-TGT 2779 Query 2645 TGA-CCTTACGAGGATGCTCTAAA-CTAGAAGA-TCTTCCAGCCAACATCAAATTGGA-A 2700 ||| | | |||||||||| ||| |||||| | ||||||| | |||||||| || || | Sbjct 2780 TGAGAATGA-GAGGATGCTC-AAAGCTAGAA-ACTCTTCCAACAAACATCAACTT-GATA 2835 Query 2701 TCTCTTTGCT-TACTTGATCTCACTGATTGCTTGCTGTTGAAAAGGTTTCCTGAGATCTC 2759 ||||| | | ||||||||||||| ||||||| || ||||||||| ||||| |||||||| Sbjct 2836 TCTCTCCG-TATACTTGATCTCACAGATTGCTCGCAGTTGAAAAGTTTTCCCGAGATCTC 2894 Query 2760 CACAAAC-GTTGA-AACTCTCTATCTCAAAGGAACCACAATAGAAGAAGTCCCTTCATCA 2817 |||| || || | | ||| | | |||||||| ||||| ||||||| |||| || Sbjct 2895 CACACACATTTCAGAGCTC-AGGT-TAAAAGGAACTGCAATAAAAGAAGTTCCTTTGTCG 2952 Query 2818 ATCAAATCTTGGTCTCGTCTCACT-TACT-TGCATATGTCATACAGTGAAAATC-TCATG 2874 |||| || ||||||||||| || || | || | ||||||||| ||||| | | | | Sbjct 2953 ATCACGTCGTGGTCTCGTCTTGCTGTA-TATG-AAATGTCATACTTTGAAAGCCTTAAGG 3010 Query 2875 AACTTTCCTCATGCTTTTGACATCATCACAAGGCTGTAC--GTGACCAA-T-ACAGAGAT 2930 || || || |||||| ||||||||||||| | | ||| || || | | ||| || Sbjct 3011 AA-TTCCCGCATGCTCTTGACATCATCAC-CGAC-CTACTTTTG-GTAAGTGA-AGATAT 3065 Query 2931 ACAAG-AGCTTCCCCCATGGGTCAAGA-AATTCTCTCATTTAAGAGAACTCATTCTCAAG 2988 ||||| || |||| ||||||||||||| || | |||| |||| | | || | ||||| Sbjct 3066 ACAAGAAG-TTCCTCCATGGGTCAAGAGAA-TGTCTCGTTTACGTGCTCTTAGACTCAA- 3122 Query 2989 GGA-TGCAAAAAG-CTGGTATCACTCCCACAGA-TTCCAGATT-CCATCACTTACATAGA 3044 | ||| || || ||||||||||||||||| | ||||||||| || | | ||||||| | Sbjct 3123 CAACTGC-AATAGTCTGGTATCACTCCCACA-ACTTCCAGATTCCCTTGA-TTACATATA 3179 Query 3045 TGCAGA-AGATTGTGAGTCCCTGGAGAAACTAGATTGCTCCTTTCACGATCCAAAGATTC 3103 |||||| | ||||| ||||||| |||| ||| ||||| | |||| || ||||| |||| | Sbjct 3180 TGCAGATA-ATTGTAAGTCCCTCGAGAGACTGGATTGTTGCTTTAACAATCCAGAGATCC 3238 Query 3104 GGGTCAACTTT-GCTAAGTGCTTCAAACTGAATCAAGAAGCCAGAGACCTCATCATCCAG 3162 | || | ||| | || ||||||||||||||||||||||||||||| |||||||| || Sbjct 3239 GTCTCTA-TTTCCCCAAATGCTTCAAACTGAATCAAGAAGCCAGAGATCTCATCATGCAC 3297 Query 3163 ACACCAACTAGTAATTATGCGATCTTACCCGGCAGAGAAGTGCCTGCATACTTCACTCAC 3222 ||| ||||| |||| |||||||| ||||| | | | |||||||||| | ||||| |||| Sbjct 3298 ACATCAACTCGTAAATATGCGATGTTACCAAGTATACAAGTGCCTGCCTGCTTCAATCAC 3357 Query 3223 CAATCTGCTACTGGAGG-TTCCTTGACAATCAAGCTGAACGAGAAGCCTCTTCCTACATC 3281 | | || || |||| || || ||||| ||||||| |||| ||| | ||||||||||| | Sbjct 3358 CGAGCTACTTCTGG-GGATTACTTGAAAATCAAGTTGAAGGAGTCGTCTCTTCCTACAAC 3416 Query 3282 CATGCGGTTTAAGGCTTGCATTTTGCTGGTT 3312 | || | ||||||||||| || |||| ||| Sbjct 3417 CTTGAGATTTAAGGCTTGTATCATGCTTGTT 3447 > AT3G44480.1 | Symbols: RPP1, cog1 | Disease resistance protein (TIR-NBS-LRR class) family | chr3:16090564-16096359 REVERSE LENGTH=4038 Length=4038 Score = 368 bits (199), Expect = 2e-100 Identities = 574/748 (77%), Gaps = 53/748 (7%) Strand=Plus/Plus Query 2587 TGCTCAAATCTGGTAAAGCTCCCCTT-TTCTATTGGAAACCTTCAGAA-GT-TGCAAACT 2643 ||||||| |||||| | ||| |||| ||||| ||||||||||| || | ||| || Sbjct 2663 TGCTCAAGTCTGGTGACGCT-TCCTTCCTCTATAGGAAACCTTCAAAACTTGTGC-AA-G 2719 Query 2644 TTGACCTTA--CGAGGATGCTCTAAA-CTAGAAGATCTTCCAGCCAACATCAAATTGGAA 2700 || | ||| |||||||||| ||| ||||| | ||||||| ||||||||| ||| || Sbjct 2720 TT-A-ATTATGAGAGGATGCTC-AAAGCTAGAGGCTCTTCCAATCAACATCAACTTGAAA 2776 Query 2701 TCTCTTTGCT-TACTTGATCTCACTGATTGCT-TGCTGTTGAAAAGGTTTCCTGAGATCT 2758 |||| | | | |||| ||||||| ||||||| | | ||||||||| ||||||||||||| Sbjct 2777 TCTC-TCGATACACTTAATCTCACAGATTGCTCT-CAGTTGAAAAGTTTTCCTGAGATCT 2834 Query 2759 CCACAAAC-GTTGA-AACTCTCTATCTCAAAGGAACCACAATAGAAGAAG-TCCCTTCAT 2815 ||||| || || | | ||| | | |||||||| ||||| |||||| |||||| | Sbjct 2835 CCACACACATTTCAGAGCTC-AGGT-TAAAAGGAACTGCAATAAAAGAAGTTCCCTT-GT 2891 Query 2816 CAATCAAATCTTGGTCTCGTCTCACTTACTTGCATATGTCATACAGTGAAAATCTCAT-G 2874 | |||| || ||||||| ||| || |||| || || |||||| ||||| ||||| | Sbjct 2892 CGATCATGTCGTGGTCTCCTCTTGCTGACTTTCAGATTTCATACTTTGAAAGCCTCATGG 2951 Query 2875 AACTTTCCTCATGCTTTTGACATCATCAC-AAGGCTGTACGTGACCAATACAGAGATACA 2933 || || || |||||||||||||||||||| || |||| | ||| | | | ||| ||||| Sbjct 2952 AA-TTCCCGCATGCTTTTGACATCATCACGAA-GCTGCATTTGAGC-A-A-AGATATACA 3006 Query 2934 AG-AGCTTCCCCCATGGGTCAAGA-AATTCTCTCATTTAAGAGAACTCATTCTCAAGGGA 2991 || || |||| ||||||||||||| || | |||| |||| | || || | |||||| | Sbjct 3007 AGAAG-TTCCTCCATGGGTCAAGAGAA-TGTCTCGTTTACGTGATCTTAGTCTCAA-CAA 3063 Query 2992 -TGCAAAAAGCTGGTATCACTCCCACAGA-TTCCAGATT-CCATCACTTACATAGATGCA 3048 ||||| || |||||||||||||| || | || |||||| || | | ||||||| ||||| Sbjct 3064 CTGCAATAATCTGGTATCACTCCCCCA-ACTTTCAGATTCCCTTGA-TTACATATATGCA 3121 Query 3049 GA-AGATTGTGAGTCCCTGGAGAAACTAGATTGCTCCTTTCACGATCCAAAGATTCGGGT 3107 || | ||||| ||||||| |||| ||| ||||| | |||| || ||||| |||| || | Sbjct 3122 GATA-ATTGTAAGTCCCTCGAGAGACTGGATTGTTGCTTTAACAATCCAGAGATCCGTCT 3180 Query 3108 CAACTTT-GCTAAGTGCTTCAAACTGAATCAAGAAGCCAGAGACCTCATCATCCAGACAC 3166 | | ||| | || ||||||||||||||||||||||||||||| |||||||| | ||| Sbjct 3181 CTA-TTTCCCCAAATGCTTCAAACTGAATCAAGAAGCCAGAGATCTCATCAT---G-CAC 3235 Query 3167 CAACTAGTA-ATTATGCGATCTTACCCGGCAGAGAAGTGCCTGCATACTTCACTCACCAA 3225 | || ||| | ||||||| || || || | | |||||||||| | ||||| ||| | | Sbjct 3236 -A-CTTGTATAG-ATGCGATGTTTCCAGGTACACAAGTGCCTGCCTGCTTCATTCATCGA 3292 Query 3226 TCTGCTACTGGAGG-TTCCTTGACAATCAAGCTGAACGAGAAGCCTCTTCCTACATCCAT 3284 || || |||| || |||||||| ||||||| |||| ||| ||||||||||||| || | Sbjct 3293 GCTACTTCTGG-GGATTCCTTGAAAATCAAGTTGAAGGAGTCGCCTCTTCCTACAACCTT 3351 Query 3285 GCGGTTTAAGGCTTGCATTTTGCTGGTT 3312 | | ||||||||||| || |||| ||| Sbjct 3352 GAGATTTAAGGCTTGTATCATGCTTGTT 3379 > AT5G44510.1 | Symbols: TAO1 | target of AVRB operation1 | chr5:17929673-17934188 REVERSE LENGTH=3564 Length=3564 Score = 366 bits (198), Expect = 7e-100 Identities = 630/832 (76%), Gaps = 55/832 (7%) Strand=Plus/Plus Query 136 tcttctctgtctccttcatctcttcaatcgtcttTGGATC-GCATCTGGACACACCATGT 194 |||||||| ||| ||||||||| | || |||||| || || ||| |||| ||| Sbjct 67 TCTTCTCTATCTTCTTCATCTCCCCCTTCTTCTTTGTCTCAAAAT-TGGTTGCACCCTGT 125 Query 195 GTTTC-CAAGTTTCCGAGGGGAAGATGTCCGTAGAGACTTTCTTAGTCACATTCAGATGG 253 |||| || ||||| |||||||||||||| | || ||| || ||||||||||||| || Sbjct 126 -TTTCTTGAGCTTCCGTGGGGAAGATGTCCGCAAAGGCTTGCTCAGTCACATTCAGAAGG 184 Query 254 AGTTTCAAAGAATGGGAATCACACCGTTCATTGATAATGAGATCAAGAGAGGACAATCCA 313 |||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 185 AGTTTCAAAGAAACGGAATCACACCGTTCATTGATAATGAGATGAAGAGAGGAGGATCCA 244 Query 314 TCGGTCCTGAACTCATT-CGAG-CAATTAGAGAATCCAAGATCGCAATTATCTTGCTGTC 371 | |||||||| ||| || | || | ||||||| ||| |||||||| || |||||||| || Sbjct 245 TTGGTCCTGAGCTC-TTAC-AGGCTATTAGAGGATCTAAGATCGCGATCATCTTGCTTTC 302 Query 372 AAGAAACTACGCTTCTTCGA-GCTGGTGTCTTGACGAATTGGCGGAGATTATGAAGTGCA 430 || ||||| | |||||||| | ||||||||||| ||||||| |||||||||||| |||| Sbjct 303 GAGGAACTATGGTTCTTCGAAG-TGGTGTCTTGATGAATTGGTGGAGATTATGAAATGCA 361 Query 431 GGGAAGAATTGGGTCAAACAGTTTTGGCTGTTTTCTATAAAGTGGATCCATCTGATGTAA 490 | ||||| |||||||||||||| || | ||||| ||| | ||||||||||||||||| | Sbjct 362 GAGAAGAGTTGGGTCAAACAGTGATGACCGTTTTTTATGATGTGGATCCATCTGATGTGA 421 Query 491 AGAAGCTGACCGGAGATTTTGGAAAAGTCTTCaaaaaaaCATGTGCCGGTAAAACAAAAG 550 ||||| || ||||||||||| || || || |||||||| |||| || || || | || Sbjct 422 GGAAGCAGAAGGGAGATTTTGGGAAGGTTTTTAAAAAAACTTGTGTTGG-AAGACCAGAG 480 Query 551 -AGCACGTTGG-GAGATGGA-GACAAGCTTTGGCAAATG-TCGCCACA-AT-CGCTGGTT 604 || | | | |||||||| | ||||||||| | | | | || | | || | | || Sbjct 481 GAG-ATGGTACAGAGATGGAAG-CAAGCTTTGACCAGCGCT-GCAA-ATATACTCGGGG- 535 Query 605 ACCATTCGAC-CAACTGGGATAATGAAGCGGCCATGATTaaaaaaaTCGCTACTGATATT 663 | |||| | ||||||||| || ||||||| ||||| | |||||| | | ||| | Sbjct 536 AGGATTCT-CGCAACTGGGAAAACGAAGCGGATATGATCATTAAAATCTCAAAAGATGTC 594 Query 664 TC-GAACACGTTGAATAATT-CTGCATCATCAA-GTGATTTCGAT-AGGCTGGTTGGAAT 719 || || ||||| | || | || |||||| | ||||| ||| || || |||| || Sbjct 595 TCCGATGT-GTTGAGTT-TTAC-GC--CATCAAAG-GATTTTGATGAGTTTG-TTGGCAT 647 Query 720 -GAGAGAACATTTAGA-GAAGATGGAAC--CGTTATTATGT-TTAGACTCAG-ATGAAGT 773 || || ||| || | |||| ||| |||| ||| || || || | | ||||| Sbjct 648 TGA-AGCTCATAC-GACGGAGAT--AACTTCGTTGTTACAACTT-GA-TCTGGAAGAAGT 701 Query 774 GAGGCTGATTGGGATTTGGGGTCCTTCTGGGATTGGGAAGACGACCATCGCCAGAGTTAT 833 ||| |||| ||||||||||||||| |||| ||||| |||||||||||| |||||||| | Sbjct 702 GAGAATGATAGGGATTTGGGGTCCTGCTGGTATTGGCAAGACGACCATCTCCAGAGTTCT 761 Query 834 ATACAACAAACTCTC-CGGCAGTTTTCAACTGAGTGTCTTT-ATGGA-ATCTATCGAAGC 890 ||| |||||||||| | ||||| |||||| | | | | || || | | ||| ||| Sbjct 762 ATATAACAAACTCTTTCATCAGTTC-CAACTGGGCG-CAATCATTGACAAC-ATCAAAGT 818 Query 891 AAAATATACAAGACCATGTTC-CGATGACTATAGTGCCAAGTTGCAGTTACA 941 | ||| ||||||| ||| | |||||| || ||||| ||| |||||||||| Sbjct 819 ACGTTATCCAAGACCTTGT-CACGATGAGTACAGTGCAAAGCTGCAGTTACA 869 > AT5G38340.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR class) family | chr5:15320507-15324061 FORWARD LENGTH=3180 Length=3180 Score = 298 bits (161), Expect = 3e-79 Identities = 593/795 (75%), Gaps = 56/795 (7%) Strand=Plus/Plus Query 191 ATGTGTTTCCAAGTTTCCGA-GGGGAAGATGTCCGTAGAGA-CTTTCTTAGTCACATTC- 247 |||| ||||| ||||||| | || | |||||| || | | | ||||||| |||||| | Sbjct 173 ATGTCTTTCCGAGTTTCC-ACGGAGCAGATGTTCGCA-AAACCTTTCTTTCTCACATGCT 230 Query 248 AGATGGAGTTTCAAA-GAATGGGAATCACACCGTTCATTGATAATGAGATCAAGAGAGGA 306 | | ||| |||||| ||| ||||||| || |||||||||||||| ||| || |||| Sbjct 231 A-AAAGAG-TTCAAACGAAAGGGAATCGTTCCATTCATTGATAATGATATC--GACAGGA 286 Query 307 -CAA-TCCATCGGTCCTGAACTCATTCG-AGCAATTAGAGAATCCAAGATCGCAATTATC 363 ||| || || |||||||| ||| || ||| || |||| ||| ||||||||||| || Sbjct 287 GCAAGTCTATTGGTCCTGAGCTC-GACGAAGCTATCAGAGGATCAAAGATCGCAATCGTC 345 Query 364 TTGCTGTC-AAGAAACTACGCTTCTTCGAGC-TGGTGTCTTGACGAATTGGCGGAGATTA 421 |||| || ||| ||||| |||||||| | | ||||| || |||| |||| |||||| | Sbjct 346 ATGCTCTCAAAG-AACTATGCTTCTTC-ATCATGGTGCCTAAACGAGTTGGTGGAGATCA 403 Query 422 TGAAGTGCAGGGAAGAATTGGGTCAAACAGTTTTGGCTGTTTTCTATAAAGTGGATCCAT 481 ||| || || |||| ||| ||||||||| || | |||||||| || || ||| Sbjct 404 CGAAATGTAGAAAAGATTTGAATCAAACAGTGATGACCATTTTCTATGGCGTTGACCCAA 463 Query 482 CTGATGTAAAGAAGCTGACCGGAGATTTTGGAAAAGTCTTCaaaaaaaCATGTGCCGGTA 541 | ||||||||||||| ||| ||||| ||||| || |||||| ||| ||| |||| ||| Sbjct 464 CAGATGTAAAGAAGCAGACAGGAGAGTTTGGGAAGGTCTTCGAAAGAACTTGTGAAAGTA 523 Query 542 AAACAAAAGAGCACGTTGGGAGATGGAGACAAGCTTTGGCAAAT-GT-C-GCCACAATCG 598 ||||| | ||||| ||| || ||||||| ||| ||||| || || | || ||||||| Sbjct 524 AAACAGAGGAGCAGGTTAAGACATGGAGAGAAGTTTTGG---ATGGTGCGGCAACAATCG 580 Query 599 CTGGTTACCATTCGAC-CAACTGGGATAATGAAGCG-GCCATGATTaaaaaaaTCGCTAC 656 |||| | |||| | | || |||||||||||||||| | ||||||| ||||||| | | Sbjct 581 CTGGAGAGCATT-GGCACATCTGGGATAATGAAGCGAG-CATGATTGAAAAAATTTCCAT 638 Query 657 TGATATTTCGAACACGT-TGAATAATT-CTGCATCATCAAGTGATTTCGATAG-GCTGGT 713 ||| |||| |||| | | ||| || || || | ||||| ||||| || | || | Sbjct 639 TGACGTTTCAAACA-TTCTTAATCGTTCCT-CACCCTCAAGAGATTTTGA-CGATTTGAT 695 Query 714 TGGAAT-GAGAGAACATTTAGAGAAGATGGAACCGTTATT-ATGTTTAGACTC-AGATGA 770 ||| || || || ||| | || || ||| || |||| || | | || |||| | |||| Sbjct 696 TGGGATGGA-AGCTCATATGGAAAAAATGAAATCGTTGTTGA-GCCTACACTCTA-ATGA 752 Query 771 AGTGAGGCTGATTGGGATTTGGGGTCCTTCTGGGATTGGGAAGACGACCATCGCCAGAGT 830 ||||| | ||||||||||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 753 AGTGAAGATGATTGGGATTTGGGGTCCTTCTGGGATTGGGAAGACCACCATTGCAAGAGT 812 Query 831 -TATATACAACAAACTCTCCGGC-AGTTTTCAACTGAGTGTCTTTATGGA-ATCTATCGA 887 | |||| ||| | || ||| | |||| | |||||||||||||||| | ||| | Sbjct 813 CT-TATATAACCGTTTTTCTGGCGA-TTTTGGATTGAGTGTCTTTATGGACAA-TATTAA 869 Query 888 AGCAAA--AT--ATACAAGACCA-TG--TTCCGATGACTATAGTGCCAAGTTGCAGTTAC 940 || | || ||||||||||| || ||| || || || ||||| |||||||| |||| Sbjct 870 AG-AGTTGATGCATACAAGACCAGTGGGTTCTGACGATTACAGTGCAAAGTTGCACTTAC 928 Query 941 A-ACAGCAGTTTATG 954 | | | ||||| ||| Sbjct 929 AGA-ACCAGTTAATG 942 > AT3G03855.1 | Symbols: | pseudogene of disease resistance protein | chr3:986948-990738 FORWARD LENGTH=3791 Length=3791 Score = 241 bits (130), Expect = 5e-62 Identities = 372/486 (77%), Gaps = 28/486 (6%) Strand=Plus/Plus Query 150 ttc-atctcttcaatcgtcttTG-GATCG-CATCTGGACACACCATGTGTTTCCAAGTTT 206 ||| |||||||| ||| || || | ||| || |||| |||| |||| || || || || Sbjct 110 TTCAATCTCTTC-ATCTTCCATGCG-TCGTAAT-TGGATACACGATGTCTTCCCGAGCTT 166 Query 207 CCGA-GGGGAAGATGTCCGTAGAGA-C-TTTCTTAGTCACATTCAGATGGAGTTTCA-AA 262 || | || | ||||||||| | | | | ||||| ||||||| || || |||| ||| || Sbjct 167 CC-ACGGTGCAGATGTCCGCA-A-ATCGTTTCTGAGTCACACTCTGAAGGAG-CTCAGAA 222 Query 263 G-AATGGGAATCACAC-CGTTCATTGATAATGAGATCAAGAGAGGACAATCCATCGGTCC 320 | || || ||| || |||||||||||||| ||| ||||||| ||| ||||| || Sbjct 223 GCAA-AGGTATC-GACTTATTCATTGATAATGATATCTTGAGAGGAGAATTTATCGGCCC 280 Query 321 TGAACTCATTCGAGCAATTAGA-GAATCCAAGATCGCAATTATCTTGCTGTC-AAGAA-A 377 ||| |||| ||| | | | | ||| | | |||| ||| ||||||| || || || | Sbjct 281 TGAGCTCAAAAAAGCGA-TCCATGGATCGAGGCTCGCGATTGTCTTGCTCTCGAA-AAGA 338 Query 378 CTACGCTTCTTCGAGC-TGGTGTCTTGACGAATTGGCGGAGATTATGAAGTGCAGGGAAG 436 |||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||| Sbjct 339 -TACGCTTCTTCG-TCGTGGTGTCTTGACGAATTGGCGGAGATTATGAAGTGCAAGGAAG 396 Query 437 AATTGGGTCAAACAGTTTTGGCTGTTTTCTATAAAGTGGATCCATCTGATGTAAAGAAGC 496 || ||||||||||| |||| ||||||| ||||||||||| |||||||| |||||| Sbjct 397 CTTTTGGTCAAACAGTGATGGCCATTTTCTACGAAGTGGATCCAACTGATGTAGAGAAGC 456 Query 497 TGACCGGAGATTTTGGAAAAGTCTTCaaaaaaaCATGTGCCGGTAAAACAAAAGAGCACG 556 |||||||| |||||| ||||||||| | |||| |||| ||||||||| ||| || Sbjct 457 AGACCGGAGGTTTTGGGGAAGTCTTCACAGAAACTTGTGAGGGTAAAACAGCTGAGGACA 516 Query 557 TTGGGAGATGGAGACAAGCT-TTGGCAAATGTCGCCACAATCGCTGGTTACCATTCGACC 615 ||| || |||||| |||||| ||| |||| || || || || || |||||| ||| | | Sbjct 517 TTGAGAAATGGAGTCAAGCTCTTG-CAAAAGTGGCAACTGTCACTAGTTACCTTTCAAGC 575 Query 616 AACTGG 621 | |||| Sbjct 576 AGCTGG 581 > AT3G44400.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR class) family | chr3:16045954-16049668 REVERSE LENGTH=3314 Length=3314 Score = 215 bits (116), Expect = 3e-54 Identities = 293/377 (78%), Gaps = 18/377 (5%) Strand=Plus/Plus Query 2945 CATGGGTCAAGA-AATTCTCTCATTTAAGAGAACTCATTCTCAAGGGA-TGCAAAAAGCT 3002 |||||||||||| || | |||| |||| | | || | ||||| | ||||| || || Sbjct 2414 CATGGGTCAAGAGAA-TGTCTCGTTTACGTGTTCTGACACTCAA-CAACTGCAATAATCT 2471 Query 3003 GGTATCACTCCCACAGA-TTCCAGA-TTCCATCACTTACATAGATGCAGA-AGATTGTGA 3059 |||||||||||| || | ||||||| | || | | ||||||| ||||||| | ||||| | Sbjct 2472 GGTATCACTCCCCCA-ACTTCCAGACTCCCTTGA-TTACATATATGCAGATA-ATTGTAA 2528 Query 3060 GTCCCTGGAGAAACTAGATTGCTCCTTTCACGATCCAAAGATTCGGGTC-A-ACTTTGCT 3117 |||||| |||| ||| || || | |||| || ||||| ||||| ||| | | ||| | Sbjct 2529 GTCCCTCGAGAGACTGGACTGTTGCTTTAACAATCCAGAGATT--AGTCTATATTTTCCC 2586 Query 3118 AAGTGCTTCAAACTGAATCAAGAAGCCAGAGACCTCATCATCCAGACACCAACTAGTA-A 3176 || ||||||||||||||||||||||||||||| |||||||| || ||| | ||| || | Sbjct 2587 AATTGCTTCAAACTGAATCAAGAAGCCAGAGATCTCATCATGCACACATCGACTTCTAGA 2646 Query 3177 TTATGCGATCTTACCCGGCAGAGAAGTGCCTGCATACTTCACTCACCAATCTGCTACTGG 3236 || |||||| |||||||| | | |||||||||| | ||||| ||||| | || || |||| Sbjct 2647 TT-TGCGATGTTACCCGGTACACAAGTGCCTGCCTGCTTCATTCACCGAGCTACTTCTGG 2705 Query 3237 AGG-TTCCTTGACAATCAAGCTGAACGAGAAGCCTCTTCCTACATCCATGCGGTTTAAGG 3295 || || ||||| ||||||| |||| ||| |||| |||||||| || || | ||||||| Sbjct 2706 -GGATTACTTGAAAATCAAGTTGAAGGAGTCGCCTTTTCCTACAACCTTGAGATTTAAGG 2764 Query 3296 CTTGCATTTTGCTGGTT 3312 |||| || |||| ||| Sbjct 2765 CTTGTATCATGCTTGTT 2781 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 182708006406 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5