BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg887643 Length=2868 Score E Sequences producing significant alignments: (Bits) Value AT5G11250.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 924 0.0 AT1G65850.2 | Symbols: | Disease resistance protein (TIR-NBS-L... 558 9e-158 AT3G25510.1 | Symbols: | disease resistance protein (TIR-NBS-L... 340 3e-92 AT5G38340.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 313 7e-84 AT3G44630.3 | Symbols: | Disease resistance protein (TIR-NBS-L... 281 2e-74 AT3G44480.1 | Symbols: RPP1, cog1 | Disease resistance protein ... 246 8e-64 AT3G03855.1 | Symbols: | pseudogene of disease resistance prot... 239 1e-61 AT3G44400.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 233 6e-60 > AT5G11250.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR class) | chr5:3587978-3591960 REVERSE LENGTH=3570 Length=3570 Score = 924 bits (500), Expect = 0.0 Identities = 849/1013 (84%), Gaps = 41/1013 (4%) Strand=Plus/Plus Query 8 CTTCTT-GTTTCTTCCTTACCATTATTGCTGCTGCAATAGGATTCTTCTTGCTTTTTAGA 66 |||||| |||| |||||||||| | |||| ||||||||||| |||||| ||||| ||| Sbjct 5 CTTCTTCGTTT-TTCCTTACCACTGTTGCAGCTGCAATAGGCTTCTTCACCCTTTTGAGA 63 Query 67 AAACTCAGATTCCATCAAGAAGATAACAAAGAAAAGAA--C-tcttcttct-tcttcttc 122 |||||||||||||||| | ||||||||||||||||| | |||||| | ||| |||| Sbjct 64 AAACTCAGATTCCATC---ATGATAACAAAGAAAAGAAGTCAACTTCTT-TATCTCCTTC 119 Query 123 ATCAACACCATCTTCTTTAG-CTCCTTCATCACCACCACCATCGTCTTTGGATCCCATCT 181 |||| | ||||||||||| | ||||||||||| || ||| | |||| | | ||||| Sbjct 120 ATCATCTCCATCTTCTTT-GTCTCCTTCATCAGTTCCTCCACCTTCTTCGTCTTGCATCT 178 Query 182 GGACACACCATGTGTTTCCAAGTTTTC-GAGGGGAAGATGTCCGTAGAGACTTTCTTAGT 240 |||||||||| || ||||| || ||| | |||||||||||||||||||||||||| ||| Sbjct 179 GGACACACCAAGTCTTTCCCAG-CTTCAGCGGGGAAGATGTCCGTAGAGACTTTCTCAGT 237 Query 241 CACATTCAGATGGAGTTTCAAAGAATGGGAATCACACCATTCATTGATAATGAGATCGAG 300 ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| | Sbjct 238 CACATTCAGATGGAGTTTCAAAGAATGGGAATCACTCCATTCGTTGATAATGAGATTAAA 297 Query 301 AGAGGACAATCCATCGGTCCCGAACT-CATTAGAGCAATTAGAGAATCCAAGATCGCAAT 359 |||||| ||||||||||||| || || | | | || ||||||| || ||||| ||||| Sbjct 298 AGAGGAGAATCCATCGGTCCTGAGCTTC-TGCGGGCTATTAGAGGGTCTAAGATAGCAAT 356 Query 360 TATCTTGCTCTCAAGAAACTACGCTTCTTCGAGTTGGTGTCTTGACGAATTGGCGGAGAT 419 |||||||||||| || ||||| |||||||| | ||||||||||||||| ||| |||||| Sbjct 357 TATCTTGCTCTCTAGGAACTATGCTTCTTCAAAATGGTGTCTTGACGAACTGGTGGAGAT 416 Query 420 TATGAAGTGCAGGGAAGAAT-TGGGTCAAACAGTGTTGGCTGT-TTTCTATAAAGTGGAT 477 |||||| ||||| ||||| | ||| |||||| ||| |||| | ||| || ||||||||| Sbjct 417 TATGAAATGCAGAGAAGAGTATGG-TCAAACTGTGATGGCCATATTT-TACAAAGTGGAT 474 Query 478 CCATCTGATGTAAATAAGCTGACCGGAGATTTTGGAAAAGTCTTCaaaaaaaCATGTGCC 537 || ||||||||||| || |||||||||||||| || |||||||| | |||||| |||||| Sbjct 475 CCTTCTGATGTAAAAAATCTGACCGGAGATTTCGGGAAAGTCTTTAGAAAAACTTGTGCC 534 Query 538 GGTAAAACAAAAGA-GCACGTTGGGAGATGGAGACAAGCTTTGGCAAATGTCGCCACAAT 596 |||||| |||| || | || ||||||||||||||||||||| || ||| || |||||| | Sbjct 535 GGTAAACCAAA-GAAGGACATTGGGAGATGGAGACAAGCTTGGGAAAAAGTGGCCACAGT 593 Query 597 CGCCGGTTACCATTCGACCAACTGGGATAATGAAGCGACCATGATTA-GAAATATCGCTA 655 || ||||||||||| | ||||||||||||||||||| ||||||| | |||| ||||| | Sbjct 594 AGCTGGTTACCATTCAATCAACTGGGATAATGAAGCGGCCATGATCAAGAAA-ATCGCCA 652 Query 656 CTGATATATCCAACA-AGTTGAATAATTCTGCCTCAT-CAAGTGATTTTGATGGGTTGGT 713 ||||||| || |||| | |||| |||||| | || | || ||||||| || ||||| || Sbjct 653 CTGATATTTCGAACATA-TTGATTAATTCCAC-TCCTTCACGTGATTTCGACGGGTTAGT 710 Query 714 TGGGATGACTGCTCATTT-GAAGAAGATGGAACCATTGTTATGCCTAGGCTCAGATGAAG 772 |||||||| |||||||| ||| |||||| |||| ||||||||||||| | |||| |||| Sbjct 711 TGGGATGAGAGCTCATTTAGAA-AAGATGAAACCGTTGTTATGCCTAGACACAGACGAAG 769 Query 773 TGAGGATGATTGGGATTTGGGGTCCTTCTGGGATTGGAAAGACGACCATCGCCAGAGTTG 832 | ||||| |||||||||||||||||| |||||||||| ||||| || || |||||||||| Sbjct 770 TAAGGATAATTGGGATTTGGGGTCCTCCTGGGATTGGGAAGACCACAATTGCCAGAGTTG 829 Query 833 TATACAACAAACTCTCCAACAGTTTCCAACTGAGTGTCTTTATGGA-ATCTATCGAAGCA 891 |||||||| |||||||| |||||||||||||||||||||||||||| | |||| ||||| Sbjct 830 TATACAACCAACTCTCCCACAGTTTCCAACTGAGTGTCTTTATGGAGAA-TATCAAAGCA 888 Query 892 AAATATACAAGACCA--TGT-TCCGATGACTATAGTGCCAAGTTGCAGTTACAACAGCA- 947 || ||||| |||||| || ||||||||||| ||||| |||||||| |||||||| | Sbjct 889 AACTATACCAGACCAACTGGCTCCGATGACTACAGTGCAAAGTTGCAATTACAACAA-AT 947 Query 948 GTTTATGTCTCAAATAACCAACCAGA-GTGATAT-GAAGATTTCTCATTTAGG 998 ||||||||||||||||||||| || | | ||||| || |||| |||||||||| Sbjct 948 GTTTATGTCTCAAATAACCAAGCAAAAG-GATATAGA-GATTCCTCATTTAGG 998 Score = 416 bits (225), Expect = 5e-115 Identities = 547/699 (78%), Gaps = 36/699 (5%) Strand=Plus/Plus Query 2173 ATGTCATACACTGAAAATCTCA--AGAACTTTCCTCATGCTT-TTGACATCATCACAGGC 2229 ||||||||| ||| ||||| | ||| || ||||||| || |||||||||||||| Sbjct 2890 ATGTCATACTTTGATAATCT-AGTGGAA-TTCCCTCATG-TTCTTGACATCATCACAAAT 2946 Query 2230 CTGCACATGACCAATACAGAAATACAAGAGGTTCCCCCA-TGGATCAAGA-AATTCTCTC 2287 ||| || ||| | || |||||||||||||||||| ||| || ||||||| ||| |||| Sbjct 2947 CTGGACTTGAGCGGTAAAGAAATACAAGAGGTTCCTCCACTG-ATCAAGAGAATA-TCTC 3004 Query 2288 GT-TTAACAGTACTCATACTCAAGGGATGCAAAAAGTTGGTATCACTCCCACAGATTCCA 2346 || || | | ||||||||||||||| | || |||| ||||||||||||||||||||||| Sbjct 3005 GTCTTCAGAC-ACTCATACTCAAGGGGTACAGAAAGGTGGTATCACTCCCACAGATTCCA 3063 Query 2347 GATTCCATCTCTTACATAGATGCAAAAGATTGTGAGTCCCTGGAGAGACTAGATTGCTCC 2406 ||||| | | || ||||| |||||||||||||| |||||||||||||||||||| Sbjct 3064 GATTCTTTAAAATGGATTGATGCTGAAGATTGTGAGTCCTTGGAGAGACTAGATTGCTCC 3123 Query 2407 TTTCACAATCCAAAGATTTGGCTCAGATTTGCTAAGTGCTTCAAACTGAATCAAGAAGCC 2466 |||||||||||| ||||| ||| |||| ||||||||| ||||| ||||||||||| Sbjct 3124 TTTCACAATCCAGAGATTACTCTCTTCTTTGGTAAGTGCTTTAAACTTAATCAAGAAGCA 3183 Query 2467 AGAGACCTCATCATCCAGACACCAACTAGTAGATCTGCGGTCTTACCCGGCAGAGAAGTG 2526 |||||||| |||||||||||||| |||| | | || |||||||| || ||||| ||| Sbjct 3184 AGAGACCTAATCATCCAGACACCGACTAA-ACAA--GCAGTCTTACCTGGTAGAGAGGTG 3240 Query 2527 CCTGCATACTTCACTCACCAATCTACTACTGGAGGTTCCTTGACAATCAAGCTGAACGAG 2586 ||||||||||||||||||| | | | | || ||||| |||||||| ||| |||| ||| Sbjct 3241 CCTGCATACTTCACTCACCGAGCGAGTG--GG-GGTTCATTGACAATTAAGTTGAATGAG 3297 Query 2587 AAGCCTCTTCCTACATCCATGCGGTTTAAGGCTTGCATTTTGCTGGTTCATAAAGGTGAC 2646 | ||||||||||||||| ||| | | |||||||||||| ||||| |||| || |||||| Sbjct 3298 AGGCCTCTTCCTACATCTATGAGATATAAGGCTTGCATCTTGCTAGTTCGTATTGGTGAC 3357 Query 2647 AATGAG-GCTCGTGAT-GATAAAAACTGGATGGATGAAAATTGCTA-CATTGTTAGTTGT 2703 ||| | |||| |||| || | ||| ||| | ||| ||||| | |||||| | | Sbjct 3358 TATG-GCGCTCATGATAGAGACAAA-TGGTTACATG----TTGCTTTCGGTGTTAGGTCT 3411 Query 2704 aaaaaaaGTAAG-CATTATT-TATATCCAGTTTTAGCAGAGCATGTGTACGTATTTGAAG 2761 | || | | | || ||| ||||| ||| ||| |||||||| ||||| ||| ||| Sbjct 3412 ACAACAT-TGGGGCAC-ATTATATATTCAGGCTTAACAGAGCATCTGTACACATTCGAAA 3469 Query 2762 TCGAAGCAGATG-TGACTTCCAGCGGGCTTGTCTTTGAGTTCAAGATC-AGGA-G-TAAG 2817 |||||| ||| | |||||||||||| ||||||||||||||||||| || || | | ||| Sbjct 3470 TCGAAG-AGAAGGTGACTTCCAGCGAGCTTGTCTTTGAGTTCAAGGTCGAGAACGGTAAC 3528 Query 2818 AATTGGAAGATAAAAGAATGTGGGGTATTCCAACTCTCG 2856 | |||||||| |||||| ||| || |||||| ||| Sbjct 3529 CACTGGAAGATTGGAGAATGCGGGTTACGCCAACTATCG 3567 > AT1G65850.2 | Symbols: | Disease resistance protein (TIR-NBS-LRR class) family | chr1:24494678-24498542 FORWARD LENGTH=3269 Length=3269 Score = 558 bits (302), Expect = 9e-158 Identities = 661/832 (79%), Gaps = 34/832 (4%) Strand=Plus/Plus Query 181 TGGACACACCATGTGTTTCCAAGTTTTCGAGGGGAAGATGTCCGTAGAGACTTTCTTAGT 240 |||||||| || || |||||||| || || ||||||||||| ||||||| ||||| ||| Sbjct 192 TGGACACATCAAGTCTTTCCAAGCTTCCGTGGGGAAGATGTACGTAGAGGTTTTCTCAGT 251 Query 241 CACATTCAGATGGAGTTTCAAAGAATGGGAATCACACCATTCATTGATAATGAGATCGAG 300 || ||||| | |||||||||||||| |||||| |||||||||||||||||||||||| || Sbjct 252 CATATTCACAAGGAGTTTCAAAGAAAGGGAATTACACCATTCATTGATAATGAGATCAAG 311 Query 301 AGAGGACAATCCATCGGTCCCGAACTCATTAGA-GCAATTAGAGAATCCAAGATCGCAAT 359 |||||| ||||||| |||| ||| ||| || | || ||||||||||| |||||||| || Sbjct 312 AGAGGAGAATCCATTGGTCTTGAAATCA-TACATGCGATTAGAGAATCTAAGATCGCGAT 370 Query 360 TATCTTGCTCTCAAGAAACTACGCTTCTTCGA-GTTGGTGTCTTGACGAATTGGCGGAGA 418 | |||||||||| || ||||| |||||||| | ||||||||||||||| |||| ||||| Sbjct 371 TGTCTTGCTCTCTAGGAACTATGCTTCTTC-ATCTTGGTGTCTTGACGAGTTGGTGGAGA 429 Query 419 TTATGAAGTGCAGGGAAGAATTGGGTCAAACAGTGTTGGCTGTTTTCTATAAAGTGGATC 478 | ||||| |||| |||||||| |||||| |||| | | ||||||||| |||||||| Sbjct 430 TCATGAAATGCAAAGAAGAATTTAGTCAAATAGTGATCCCCATTTTCTATAGAGTGGATC 489 Query 479 CATCTGATGTAAATAAGCTGACCGGAGATTTTGGAAAAGTCTTCaaaaa-aaCATGTGCC 537 |||| ||||| || ||||| || ||| ||||||| || ||||||||||| || |||| Sbjct 490 CATCCGATGTTAAGAAGCTCACAGGAAATTTTGGGAATGTCTTCAAAAATAA-TTGTGTT 548 Query 538 GGTAAAACAAAAGAGCACGTTGGGAGATGGAGACAAGCTTTGGCAAATGTCGCCACAATC 597 |||||||| || ||| | ||| ||||||||||||| ||||||| | | |||| | Sbjct 549 GGTAAAACTAATGAGGTTATAAGGAAATGGAGACAAGCTCTGGCAAAAATGGGAACAACC 608 Query 598 GCCGGTTACCATTCGAC-CAACTGGGATAATGAAGCGACCATGATTAGAAAT-ATCGCTA 655 | |||||| |||| | |||||||||||||||||||||||||||| |||| || || | Sbjct 609 ACTGGTTACGATTC-TCGCAACTGGGATAATGAAGCGACCATGATT-GAAAACATTGCCA 666 Query 656 CTGATATATCCAACAAGTTGAATAATTCTGC-CTCATCAAGTGATTTTGATGGGTTGGTT 714 ||||||| || || | | ||||| ||||| | | ||||| |||||||||| || || || Sbjct 667 CTGATATTTCGAATATGCTGAATTATTCTACGC-CATCACGTGATTTTGACGGTTTAATT 725 Query 715 GGGATGACTGCTCATTTGAA-GAAGATGGAACC-ATTGTTATGCCTAGGCTCAGATGAAG 772 ||||||| |||||| |||| | | |||||||| || |||||||||| ||| ||||||| Sbjct 726 GGGATGAGAGCTCATATGAAAGTA-ATGGAACCGAT-GTTATGCCTACACTCCGATGAAG 783 Query 773 TGAGGATGATTGGGATTTGGGGTCCTTCTGGGATTGG-AAAGACGACCATCGCCAGAGT- 830 ||||||||||||| |||||||||||||||||||| || ||| || ||||| || ||| | Sbjct 784 TGAGGATGATTGGAATTTGGGGTCCTTCTGGGATCGGGAAA-ACTACCATTGCTAGAATC 842 Query 831 TGTATACAACAAACTCTC-CAACAGTTTCCAACTGAGTGTCTTTATGGA-A-TCT-ATCG 886 | ||| | | || | | | ||||||| || |||||||||||||||| | | | | | Sbjct 843 T-TATTTAGCCAATT-TAGCGACAGTTTTGAATTGAGTGTCTTTATGGAGAATGTTAAGG 900 Query 887 AAGCAAAA-TATACAAGACCA-TGT-TCC-GATGACTATAGTGCCAAGTTGCAGTTACA- 941 | | || ||||||||||| ||| | | ||||| || ||||| ||||| || ||||| Sbjct 901 A-GTTAATGTATACAAGACCGGTGTGTTCTGATGAATACAGTGCAAAGTTACACTTACAG 959 Query 942 ACAGCAGTTTATGTCTCAAATAACCAACCAGAGTGATAT-GAAGATTTCTCA 992 | | ||||| ||||| || || | |||||| | ||||| || |||| |||| Sbjct 960 AAA-CAGTTCATGTCCCAGATTATCAACCACAAAGATATCGA-GATTCCTCA 1009 > AT3G25510.1 | Symbols: | disease resistance protein (TIR-NBS-LRR class), putative | chr3:9260838-9268797 REVERSE LENGTH=5946 Length=5946 Score = 340 bits (184), Expect = 3e-92 Identities = 438/554 (79%), Gaps = 43/554 (8%) Strand=Plus/Plus Query 2131 CCTTTATCAATCAAATCATGGTCTCGTCTCAATGAGGTGGATATGTCATACACT-GAAAA 2189 |||| ||||||||| || |||||| | |||| || | || ||||||||||| | ||||| Sbjct 3097 CCTTCATCAATCAAGTCTTGGTCTAGACTCACTGTGTTGCATATGTCATAC-TTCGAAAA 3155 Query 2190 TCTCAA-GAACTTTC-CTCATGCTT-TTGACATCATCACAG-GCCT-GCACATGACCAAT 2244 ||||| ||| ||| | |||| || | |||||||| || | | || | | || | | Sbjct 3156 ACTCAAGGAA--TTCTCGCATG-TTCTAGACATCATAAC-GTGGCTAG-A-AT-TCGGAG 3208 Query 2245 ACAGAAATACAAGAGGTTCCCCCATGGATC-AAGAAATTCTCTCGTTTAACA-GTACTCA 2302 | ||| |||||||| ||| | ||||||||| |||||| |||||||| | ||| | ||| | Sbjct 3209 A-AGATATACAAGAAGTTGCTCCATGGATCAAAGAAA-TCTCTCGTCT-ACATGGACTTA 3265 Query 2303 TACTCAAGGGATGCAAAAAG-TTGGTATCACTCCCACAGATTCCAGATTCCATCTCT-TA 2360 |||| | ||||| |||| || |||||||||||||| ||||||| | | ||||| || Sbjct 3266 GACTCTACAAATGCAGAAAGCTT-TTATCACTCCCACAGCTTCCAGAAT-C-TCTCTCTA 3322 Query 2361 -CATAGATGCAAAAGATTGTGAGTCCCTGGAGAGACTAGATTGCTCCTTTC-ACAATCCA 2418 |||| |||| ||| |||||||||| |||||| ||||||||||| ||| | ||||||| Sbjct 3323 TCATAAATGCTGAAGGTTGTGAGTCCTTGGAGACACTAGATTGCT-CTTACAACAATCCC 3381 Query 2419 AAGA-T-TTGGCTCAGA-TTTGCTAAGTGCTTCAAACTGAATCAAGAAGCCAGAGACCTC 2475 || | || || | | |||||||||||||||||||||||||||||||| |||||| || Sbjct 3382 TTGAGTCTT--CTTA-ATTTTGCTAAGTGCTTCAAACTGAATCAAGAAGCGAGAGACTTC 3438 Query 2476 ATCATCCAGACACCAACTAGTAGATC-TGCGGTCTTACCCGGCAG-AGAAGTGCCTGCAT 2533 |||||||||| ||| || |||| || ||||||||||||||| | |||||||||||||| Sbjct 3439 ATCATCCAGATACCGACCAGTA-ATGATGCGGTCTTACCCGGT-GCAGAAGTGCCTGCAT 3496 Query 2534 ACTTCACTCACCAATCTACTACTGGAGGTTCCTTGACAATCAAGCTGAACGAGAAGCCTC 2593 |||||||||||| | |||||||||||| ||||||||| |||||| | || |||| |||| Sbjct 3497 ACTTCACTCACCGAGCTACTACTGGAGCTTCCTTGACCATCAAGTTAAATGAGAGGCCTA 3556 Query 2594 TTCCTACATCCATGCGGTTTAAGGCTTGCATTTTGCTGGTTCATAAAGGTGACAATGA-G 2652 || ||||||||||| | ||||||||||| || | ||| || | | | ||||||||| | Sbjct 3557 TTTCTACATCCATGAGATTTAAGGCTTGTATCGTACTGATT-A-AGTG-TGACAATGATG 3613 Query 2653 --GCTCGTGATGAT 2664 ||| |||||||| Sbjct 3614 AAGCTGGTGATGAT 3627 > AT5G38340.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR class) family | chr5:15320507-15324061 FORWARD LENGTH=3180 Length=3180 Score = 313 bits (169), Expect = 7e-84 Identities = 630/844 (75%), Gaps = 66/844 (8%) Strand=Plus/Plus Query 191 ATGTGTTTCCAAGTTTTCGA-GGGGAAGATGTCCGTAGAGA-CTTTCTTAGTCACATTC- 247 |||| ||||| || |||| | || | |||||| || | | | ||||||| |||||| | Sbjct 173 ATGTCTTTCCGAG-TTTCCACGGAGCAGATGTTCGCA-AAACCTTTCTTTCTCACATGCT 230 Query 248 AGATGGAGTTTCAAA-GAATGGGAATCACACCATTCATTGATAATGAGATCGAGAGAGGA 306 | | ||| |||||| ||| ||||||| ||||||||||||||||| ||| || |||| Sbjct 231 A-AAAGAG-TTCAAACGAAAGGGAATCGTTCCATTCATTGATAATGATATC--GACAGGA 286 Query 307 -CAA-TCCATCGGTCCCGAACTC-ATTAGAGCAATTAGAGAATCCAAGATCGCAATTATC 363 ||| || || ||||| || ||| | | ||| || |||| ||| ||||||||||| || Sbjct 287 GCAAGTCTATTGGTCCTGAGCTCGACGA-AGCTATCAGAGGATCAAAGATCGCAATCGTC 345 Query 364 TTGCTCTC-AAGAAACTACGCTTCTTCGAGT--TGGTGTCTTGACGAATTGGCGGAGATT 420 ||||||| ||| ||||| |||||||| | | ||||| || |||| |||| |||||| Sbjct 346 ATGCTCTCAAAG-AACTATGCTTCTTC-A-TCATGGTGCCTAAACGAGTTGGTGGAGATC 402 Query 421 ATGAAGTGCAGGGAAGAATTGGGTCAAACAGTGTTGGCTGTTTTCTATAAAGTGGATCCA 480 | ||| || || |||| ||| |||||||||| || | |||||||| || || ||| Sbjct 403 ACGAAATGTAGAAAAGATTTGAATCAAACAGTGATGACCATTTTCTATGGCGTTGACCCA 462 Query 481 TCTGATGTAAATAAGCTGACCGGAGATTTTGGAAAAGTCTTCaaaaaaaCATGTGCCGGT 540 | |||||||| |||| ||| ||||| ||||| || |||||| ||| ||| |||| || Sbjct 463 ACAGATGTAAAGAAGCAGACAGGAGAGTTTGGGAAGGTCTTCGAAAGAACTTGTGAAAGT 522 Query 541 AAAACAAAAGAGCACGTTGGGAGATGGAGACAAGCTTTGGCAAAT-GT-C-GCCACAATC 597 |||||| | ||||| ||| || ||||||| ||| ||||| || || | || |||||| Sbjct 523 AAAACAGAGGAGCAGGTTAAGACATGGAGAGAAGTTTTGG---ATGGTGCGGCAACAATC 579 Query 598 GCCGGTTACCATTCGAC-CAACTGGGATAATGAAGCGACCATGATTAG-AAATATCGCTA 655 || || | |||| | | || ||||||||||||||||| ||||||| | ||| || | | Sbjct 580 GCTGGAGAGCATT-GGCACATCTGGGATAATGAAGCGAGCATGATT-GAAAAAATTTCCA 637 Query 656 CTGATATATCCAACAAGTTGAATAATTC-TGCCTCA---TCAAGTGATTTTGATGGGTTG 711 ||| | || ||| | || ||| || | ||||| ||||| |||||||| | ||| Sbjct 638 TTGACGTTTCAAAC-A-TT-CTTAA-TCGTTCCTCACCCTCAAGAGATTTTGACGATTTG 693 Query 712 GTTGGGAT-GACTGCTCAT-TTGAAGAAGATGGAACCATTGTT-ATGCCTAGGCTC-AGA 767 ||||||| || |||||| | ||| || ||| || | ||||| | ||||| ||| | | Sbjct 694 ATTGGGATGGA-AGCTCATATGGAA-AAAATGAAATCGTTGTTGA-GCCTACACTCTA-A 749 Query 768 TGAAGTGAGGATGATTGGGATTTGGGGTCCTTCTGGGATTGGAAAGACGACCATCGCCAG 827 |||||||| ||||||||||||||||||||||||||||||||| ||||| ||||| || || Sbjct 750 TGAAGTGAAGATGATTGGGATTTGGGGTCCTTCTGGGATTGGGAAGACCACCATTGCAAG 809 Query 828 AGT-TGTATACAACAAACTCTCCAAC-AGTTTCCAACTGAGTGTCTTTATGGA-ATCTAT 884 ||| | |||| ||| | || | | ||| | |||||||||||||||| | ||| Sbjct 810 AGTCT-TATATAACCGTTTTTCTGGCGATTTTGGAT-TGAGTGTCTTTATGGACAA-TAT 866 Query 885 CGAAGCAAA--AT--ATACAAGACCA-TG--TTCCGATGACTATAGTGCCAAGTTGCAGT 937 ||| | || ||||||||||| || ||| || || || ||||| |||||||| | Sbjct 867 TAAAG-AGTTGATGCATACAAGACCAGTGGGTTCTGACGATTACAGTGCAAAGTTGCACT 925 Query 938 TACA-ACAGCAGTTTATGTCTCAA-ATAACCAACCAGA-GTGATATGAAGATTTCTCATT 994 |||| | | ||||| ||||| | | ||||||||||| | | || | |||||| |||||| Sbjct 926 TACAGA-ACCAGTTAATGTC-CGAGATAACCAACCATAAG-GAGACCAAGATTACTCATT 982 Query 995 TAGG 998 |||| Sbjct 983 TAGG 986 > AT3G44630.3 | Symbols: | Disease resistance protein (TIR-NBS-LRR class) family | chr3:16195984-16200595 FORWARD LENGTH=4031 Length=4031 Score = 281 bits (152), Expect = 2e-74 Identities = 402/520 (77%), Gaps = 28/520 (5%) Strand=Plus/Plus Query 2129 TTCCTTTATCAATCAAATCATGGTCTCGTCTCAATG-AGGTGGATATGTCATACACTGAA 2187 ||||||| || |||| || ||||||||||| || | | || ||||||||| |||| Sbjct 2942 TTCCTTTGTCGATCACGTCGTGGTCTCGTCTTGCTGTATAT-GAAATGTCATACTTTGAA 3000 Query 2188 AATCTCAA-GAACTTTCCTCATGCTTTTGACATCATCACAGGCCTGCACATGACCAA-T- 2244 | || || ||| || || |||||| ||||||||||||| | ||| | || || | Sbjct 3001 AGCCTTAAGGAA-TTCCCGCATGCTCTTGACATCATCACCGACCTACTTTTG-GTAAGTG 3058 Query 2245 ACAGAAATACAAGAGGTTCCCCCATGGATCAAGA-AATTCTCTCGTTTAACAGTACTC-- 2301 | ||| |||||||| ||||| |||||| |||||| || | |||||||| || || ||| Sbjct 3059 A-AGATATACAAGAAGTTCCTCCATGGGTCAAGAGAA-TGTCTCGTTT-AC-GTGCTCTT 3114 Query 2302 ATACTCAAGGGA-TGCAAAAAGT-TGGTATCACTCCCACAGA-TTCCAGATTCCATCT-C 2357 | |||||| | ||| || ||| |||||||||||||||| | ||||||||||| | | Sbjct 3115 AGACTCAA-CAACTGC-AATAGTCTGGTATCACTCCCACA-ACTTCCAGATTCCCT-TGA 3170 Query 2358 TTACATAGATGCA-AAAGATTGTGAGTCCCTGGAGAGACTAGATTGCTCCTTTCACAATC 2416 ||||||| ||||| | | ||||| ||||||| |||||||| ||||| | |||| |||||| Sbjct 3171 TTACATATATGCAGATA-ATTGTAAGTCCCTCGAGAGACTGGATTGTTGCTTTAACAATC 3229 Query 2417 CAAAGATTTGGCTCAGATTT-GCTAAGTGCTTCAAACTGAATCAAGAAGCCAGAGACCTC 2475 || |||| | ||| |||| | || ||||||||||||||||||||||||||||| ||| Sbjct 3230 CAGAGATCCGTCTC-TATTTCCCCAAATGCTTCAAACTGAATCAAGAAGCCAGAGATCTC 3288 Query 2476 ATCATCCAGACACCAACTAGTAGATCTGCGGTCTTACCCGGCAGAGAAGTGCCTGCATAC 2535 ||||| || ||| ||||| ||| || |||| | ||||| | | | |||||||||| | | Sbjct 3289 ATCATGCACACATCAACTCGTAAATATGCGATGTTACCAAGTATACAAGTGCCTGCCTGC 3348 Query 2536 TTCACTCACCAATCTACTACTGGAGG-TTCCTTGACAATCAAGCTGAACGAGAAGCCTCT 2594 |||| ||||| | ||||| |||| || || ||||| ||||||| |||| ||| | |||| Sbjct 3349 TTCAATCACCGAGCTACTTCTGG-GGATTACTTGAAAATCAAGTTGAAGGAGTCGTCTCT 3407 Query 2595 TCCTACATCCATGCGGTTTAAGGCTTGCATTTTGCTGGTT 2634 ||||||| || || | ||||||||||| || |||| ||| Sbjct 3408 TCCTACAACCTTGAGATTTAAGGCTTGTATCATGCTTGTT 3447 > AT3G44480.1 | Symbols: RPP1, cog1 | Disease resistance protein (TIR-NBS-LRR class) family | chr3:16090564-16096359 REVERSE LENGTH=4038 Length=4038 Score = 246 bits (133), Expect = 8e-64 Identities = 365/472 (77%), Gaps = 35/472 (7%) Strand=Plus/Plus Query 2176 TCATACACTGAAAATCTCA-AGAACTTTCCTCATGCTTTTGACATCATCAC-AGGCCTGC 2233 |||||| ||||| |||| ||| || || |||||||||||||||||||| | | |||| Sbjct 2930 TCATACTTTGAAAGCCTCATGGAA-TTCCCGCATGCTTTTGACATCATCACGAAG-CTGC 2987 Query 2234 ACATGACCAATACAGAAATACAAGAGGTTCCCCCATGGATCAAGA-AATTCTCTCGTTTA 2292 | ||| | | | ||| |||||||| ||||| |||||| |||||| || | |||||||| Sbjct 2988 ATTTGAGC-A-A-AGATATACAAGAAGTTCCTCCATGGGTCAAGAGAA-TGTCTCGTTT- 3042 Query 2293 ACAGT-ACTCATA--CTCAAGGGA-TGCAAAAAGT-TGGTATCACTCCCACAGA-TTCCA 2346 || || | || || ||||| | ||||| || | ||||||||||||| || | || || Sbjct 3043 AC-GTGA-TCTTAGTCTCAA-CAACTGCAATAA-TCTGGTATCACTCCCCCA-ACTTTCA 3097 Query 2347 GATTCCATCT-CTTACATAGATGCA-AAAGATTGTGAGTCCCTGGAGAGACTAGATTGCT 2404 |||||| | | ||||||| ||||| | | ||||| ||||||| |||||||| ||||| | Sbjct 3098 GATTCCCT-TGATTACATATATGCAGATA-ATTGTAAGTCCCTCGAGAGACTGGATTGTT 3155 Query 2405 CCTTTCACAATCCAAAGATTTGGCTCAGATTT-GCTAAGTGCTTCAAACTGAATCAAGAA 2463 |||| |||||||| |||| | ||| |||| | || ||||||||||||||||||||| Sbjct 3156 GCTTTAACAATCCAGAGATCCGTCTC-TATTTCCCCAAATGCTTCAAACTGAATCAAGAA 3214 Query 2464 GCCAGAGACCTCATCATCCAGACACCAACTAGTAGATCTGCGGTCTTACCCGGCAGAGAA 2523 |||||||| |||||||| || ||| || ||||| ||| | || || || | | || Sbjct 3215 GCCAGAGATCTCATCATGCA--CACTTG-TA-TAGAT--GCGATGTTTCCAGGTACACAA 3268 Query 2524 GTGCCTGCATACTTCACTCACCAATCTACTACTGGAGG-TTCCTTGACAATCAAGCTGAA 2582 |||||||| | ||||| ||| | | ||||| |||| || |||||||| ||||||| |||| Sbjct 3269 GTGCCTGCCTGCTTCATTCATCGAGCTACTTCTGG-GGATTCCTTGAAAATCAAGTTGAA 3327 Query 2583 CGAGAAGCCTCTTCCTACATCCATGCGGTTTAAGGCTTGCATTTTGCTGGTT 2634 ||| ||||||||||||| || || | ||||||||||| || |||| ||| Sbjct 3328 GGAGTCGCCTCTTCCTACAACCTTGAGATTTAAGGCTTGTATCATGCTTGTT 3379 > AT3G03855.1 | Symbols: | pseudogene of disease resistance protein | chr3:986948-990738 FORWARD LENGTH=3791 Length=3791 Score = 239 bits (129), Expect = 1e-61 Identities = 349/453 (77%), Gaps = 24/453 (5%) Strand=Plus/Plus Query 181 TGGACACACCATGTGTTTCCAAGTTTTCGA-GGGGAAGATGTCCGTAGAGA-C-TTTCTT 237 |||| |||| |||| || || || ||| | || | ||||||||| | | | | ||||| Sbjct 141 TGGATACACGATGTCTTCCCGAG-CTTCCACGGTGCAGATGTCCGCA-A-ATCGTTTCTG 197 Query 238 AGTCACATTCAGATGGAGTTTCA-AAG-AATGGGAATCACAC-CATTCATTGATAATGAG 294 ||||||| || || |||| ||| ||| || || ||| || ||||||||||||||| Sbjct 198 AGTCACACTCTGAAGGAG-CTCAGAAGCAA-AGGTATC-GACTTATTCATTGATAATGAT 254 Query 295 ATCGAGAGAGGACAATCCATCGGTCCC-GAACTCATTAGAGCAATTAGA-GAATCCAAGA 352 ||| ||||||| ||| ||||| ||| || |||| | ||| | | | | ||| | | Sbjct 255 ATCTTGAGAGGAGAATTTATCGG-CCCTGAGCTCAAAAAAGCGA-TCCATGGATCGAGGC 312 Query 353 TCGCAATTATCTTGCTCTC-AAGAA-ACTACGCTTCTTCG-AGTTGGTGTCTTGACGAAT 409 |||| ||| |||||||||| || || | |||||||||||| | |||||||||||||||| Sbjct 313 TCGCGATTGTCTTGCTCTCGAA-AAGA-TACGCTTCTTCGTCG-TGGTGTCTTGACGAAT 369 Query 410 TGGCGGAGATTATGAAGTGCAGGGAAGAATTGGGTCAAACAGTGTTGGCTGTTTTCTATA 469 ||||||||||||||||||||| ||||| || |||||||||||| |||| ||||||| Sbjct 370 TGGCGGAGATTATGAAGTGCAAGGAAGCTTTTGGTCAAACAGTGATGGCCATTTTCTACG 429 Query 470 AAGTGGATCCATCTGATGTAAATAAGCTGACCGGAGATTTTGGAAAAGTCTTCaaaaaaa 529 ||||||||||| |||||||| | |||| |||||||| |||||| ||||||||| | ||| Sbjct 430 AAGTGGATCCAACTGATGTAGAGAAGCAGACCGGAGGTTTTGGGGAAGTCTTCACAGAAA 489 Query 530 CATGTGCCGGTAAAACAAAAGAGCACGTTGGGAGATGGAGACAAGCT-TTGGCAAATGTC 588 | |||| ||||||||| ||| || ||| || |||||| |||||| ||| |||| || Sbjct 490 CTTGTGAGGGTAAAACAGCTGAGGACATTGAGAAATGGAGTCAAGCTCTTG-CAAAAGTG 548 Query 589 GCCACAATCGCCGGTTACCATTCGACCAACTGG 621 || || || | |||||| ||| | || |||| Sbjct 549 GCAACTGTCACTAGTTACCTTTCAAGCAGCTGG 581 > AT3G44400.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR class) family | chr3:16045954-16049668 REVERSE LENGTH=3314 Length=3314 Score = 233 bits (126), Expect = 6e-60 Identities = 466/622 (75%), Gaps = 55/622 (9%) Strand=Plus/Plus Query 2267 CATGGATCAAGA-AATTCTCTCGTTTAAC-AGTACTCATACTCAAGGGA-TGCAAAAAGT 2323 ||||| |||||| || | |||||||| || || || | |||||| | ||||| || | Sbjct 2414 CATGGGTCAAGAGAA-TGTCTCGTTT-ACGTGTTCTGACACTCAA-CAACTGCAATAA-T 2469 Query 2324 -TGGTATCACTCCCACAGA-TTCCAGATTCCATCT-CTTACATAGATGCA-AAAGATTGT 2379 ||||||||||||| || | ||||||| ||| | | ||||||| ||||| | | ||||| Sbjct 2470 CTGGTATCACTCCCCCA-ACTTCCAGACTCCCT-TGATTACATATATGCAGATA-ATTGT 2526 Query 2380 GAGTCCCTGGAGAGACTAGATTGCTCCTTTCACAATCCAAAGATTTGGCTCAGA-TTTGC 2438 ||||||| |||||||| || || | |||| |||||||| ||||| | || | | ||| | Sbjct 2527 AAGTCCCTCGAGAGACTGGACTGTTGCTTTAACAATCCAGAGATTAGTCT-ATATTTTCC 2585 Query 2439 TAAGTGCTTCAAACTGAATCAAGAAGCCAGAGACCTCATCATCCAGACACCAACTAGTAG 2498 || ||||||||||||||||||||||||||||| |||||||| || ||| | ||| ||| Sbjct 2586 CAATTGCTTCAAACTGAATCAAGAAGCCAGAGATCTCATCATGCACACATCGACTTCTAG 2645 Query 2499 ATCTGCGGTCTTACCCGGCAGAGAAGTGCCTGCATACTTCACTCACCAATCTACTACTGG 2558 || |||| | |||||||| | | |||||||||| | ||||| ||||| | ||||| |||| Sbjct 2646 ATTTGCGATGTTACCCGGTACACAAGTGCCTGCCTGCTTCATTCACCGAGCTACTTCTGG 2705 Query 2559 AGG-TTCCTTGACAATCAAGCTGAACGAGAAGCCTCTTCCTACATCCATGCGGTTTAAGG 2617 || || ||||| ||||||| |||| ||| |||| |||||||| || || | ||||||| Sbjct 2706 -GGATTACTTGAAAATCAAGTTGAAGGAGTCGCCTTTTCCTACAACCTTGAGATTTAAGG 2764 Query 2618 CTTGCATTTTGCTGGTTCA--TAAAGGT-GACAATGAG----GCTC-GTGAT-GATAAAA 2668 |||| || |||| ||| | | || | || |||||| | || | ||| ||| | Sbjct 2765 CTTGTATCATGCTTGTTAAGGTTAATGAAGA-AATGAGTTATGATCAGAGATCGATGAGC 2823 Query 2669 ACTGG-ATGG--AT--G---A-A--AATTGCTA-CATTGTT-AGTTGTaaaaaaaG-TAA 2714 || || | || | | | || |||| || ||| ||| ||| | ||| || Sbjct 2824 GTTGACATTGTCATCAGTGTACACCAA--GCTATCAAAGTTCAGT-GTACACCAAGCTAT 2880 Query 2715 GCATTATTTATATCCAGTTTTAGCAGAGCATGTGTACGTATTTGAAGTCGAAGCAGATG- 2773 ||| || |||||||||||||| |||||||| | ||| ||||||| | |||| ||| | Sbjct 2881 -CATCATATATATCCAGTTTTAACAGAGCATATATACACATTTGAACTTGAAGTAGAGGA 2939 Query 2774 --TGACTTCCAGCGG-GCTTGTCTTTGAGTTCAAGATCAGG-AGTAAG-AATTGGAAGAT 2828 ||||||||| ||| ||||||||||||||||| |||| || ||| ||||||||||| Sbjct 2940 GGTGACTTCCA-CGGAGCTTGTCTTTGAGTTCAT-ATCATTCAG-AAGCAATTGGAAGAT 2996 Query 2829 AAAAGAATGTGGGGTATTCCAA 2850 | |||||| ||| || ||||| Sbjct 2997 AGGAGAATGCGGGATACTCCAA 3018 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 142524285063 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5