BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg887750 Length=411 Score E Sequences producing significant alignments: (Bits) Value AT4G02740.1 | Symbols: | F-box/RNI-like superfamily protein | ... 141 5e-33 > AT4G02740.1 | Symbols: | F-box/RNI-like superfamily protein | chr4:1217591-1220857 REVERSE LENGTH=1628 Length=1628 Score = 141 bits (76), Expect = 5e-33 Identities = 210/274 (77%), Gaps = 11/274 (4%) Strand=Plus/Plus Query 79 TTTTTGAGGGTTTTGGGACATAGATGCAACGACAGTCCT-CTCGAGACACTAATACTGCG 137 |||||||||| ||||||| ||| ||||| || | | || ||| |||| |||||| |||| Sbjct 1002 TTTTTGAGGGAGTTGGGACTTAGCTGCAAAGAAAAT-CTACTCAAGACTCTAATATTGCG 1060 Query 138 TAATTGTTTTTCTCTCCAAGAGAGCGAAGTATT-GAAGTTTTTG-AATTCACTAATCGCG 195 | || || || |||| |||||||| ||| || || || |||||| || | Sbjct 1061 CAGCTGCCCAAAACTACAGGAGAAAGAAGTATTGGAA--TTCTGTAACTCACTACTCACA 1118 Query 196 GGGAACTTCATATCCATTCAATACATTGATGTATCAAGCAACAAAGGTTTAGCTT-GT-- 252 |||||||||| |||||||| | |||||||| ||||| |||| || ||||||| | Sbjct 1119 GGGAACTTCAAATCCATTCGGCAAATTGATGTTTCAAGTAACAGTGGATTAGCTTCTTCA 1178 Query 253 GA-TGGTGAAAGAAGAACTTCCAAACCAAACTTTCCTTTGGAAAAGCTGAAAGAAGAAAG 311 || || | ||| ||| | |||||||||||||||| |||| | ||||||||||||||| Sbjct 1179 GACAGGGGCAAG-AGATGTAACAAACCAAACTTTCCTCTGGAGAGGCTGAAAGAAGAAAG 1237 Query 312 ATCAGATGTCACATTTGTTGCGGAATTTCCCTCA 345 |||||||||||||||||| ||||| ||||| ||| Sbjct 1238 ATCAGATGTCACATTTGTGGCGGATTTTCCATCA 1271 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19453618863 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5