BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887750

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G02740.1 | Symbols:  | F-box/RNI-like superfamily protein | ...   141    5e-33


> AT4G02740.1 | Symbols:  | F-box/RNI-like superfamily protein 
| chr4:1217591-1220857 REVERSE LENGTH=1628
Length=1628

 Score =  141 bits (76),  Expect = 5e-33
 Identities = 210/274 (77%), Gaps = 11/274 (4%)
 Strand=Plus/Plus

Query  79    TTTTTGAGGGTTTTGGGACATAGATGCAACGACAGTCCT-CTCGAGACACTAATACTGCG  137
             ||||||||||  ||||||| ||| ||||| || | | || ||| |||| |||||| ||||
Sbjct  1002  TTTTTGAGGGAGTTGGGACTTAGCTGCAAAGAAAAT-CTACTCAAGACTCTAATATTGCG  1060

Query  138   TAATTGTTTTTCTCTCCAAGAGAGCGAAGTATT-GAAGTTTTTG-AATTCACTAATCGCG  195
              |  ||       || || ||||  |||||||| |||  || || || |||||| || | 
Sbjct  1061  CAGCTGCCCAAAACTACAGGAGAAAGAAGTATTGGAA--TTCTGTAACTCACTACTCACA  1118

Query  196   GGGAACTTCATATCCATTCAATACATTGATGTATCAAGCAACAAAGGTTTAGCTT-GT--  252
             |||||||||| ||||||||   | |||||||| ||||| ||||  || |||||||  |  
Sbjct  1119  GGGAACTTCAAATCCATTCGGCAAATTGATGTTTCAAGTAACAGTGGATTAGCTTCTTCA  1178

Query  253   GA-TGGTGAAAGAAGAACTTCCAAACCAAACTTTCCTTTGGAAAAGCTGAAAGAAGAAAG  311
             ||  || | ||| |||  |  |||||||||||||||| |||| | |||||||||||||||
Sbjct  1179  GACAGGGGCAAG-AGATGTAACAAACCAAACTTTCCTCTGGAGAGGCTGAAAGAAGAAAG  1237

Query  312   ATCAGATGTCACATTTGTTGCGGAATTTCCCTCA  345
             |||||||||||||||||| ||||| ||||| |||
Sbjct  1238  ATCAGATGTCACATTTGTGGCGGATTTTCCATCA  1271



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19453618863


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5