BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887840
Length=234
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65870.1 | Symbols: ATPSK5, PSK5 | phytosulfokine 5 precurso... 322 9e-88
> AT5G65870.1 | Symbols: ATPSK5, PSK5 | phytosulfokine 5 precursor
| chr5:26351508-26352269 FORWARD LENGTH=533
Length=533
Score = 322 bits (174), Expect = 9e-88
Identities = 215/235 (91%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 1 ATGGCTAATTTCACAACTTTCTTCTTCATCATCGCTCTTCTTCTCTGCTCCACGCTAACA 60
|||| ||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 86 ATGGTTAAGTTCACAACTTTCCTCTGCATCATCGCTCTTCTTCTCTGCTCCACGCTAACA 145
Query 61 TACGCATCAGCCCGGCTCACTCCGACCTCCGTTTATCCTGAAGATATCTCCGTCAAGAAA 120
|||||||||| ||||||| ||| || ||||||||||| ||||| | |||| ||||||||
Sbjct 146 CACGCATCAGCTCGGCTCAATCCAACATCCGTTTATCCAGAAGAAAACTCCTTCAAGAAA 205
Query 121 ATGGAACAAGGG-GAGGGAAACTGTGAAGGTGTTGGAGAAGAAGAATGCTTCTTGATACG 179
| |||| |||| |||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 206 CTAGAAC-AGGGAGAGGTAATCTGTGAAGGTGTTGGAGAAGAAGAATGCTTCTTGATACG 264
Query 180 AAGAACTTTAGTTGCTCACACTGATTACATCTACACTCAAGACCACAATCCCTAA 234
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 265 AAGAACTTTAGTTGCTCACACTGATTACATCTACACTCAAAACCACAATCCCTAA 319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10556227290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5