BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887876
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59220.1 | Symbols: HAI1 | highly ABA-induced PP2C gene 1 | ... 1393 0.0
> AT5G59220.1 | Symbols: HAI1 | highly ABA-induced PP2C gene 1
| chr5:23894404-23896619 REVERSE LENGTH=1632
Length=1632
Score = 1393 bits (754), Expect = 0.0
Identities = 841/883 (95%), Gaps = 6/883 (1%)
Strand=Plus/Plus
Query 1 GACGAGAAATGGAAGACGCCGTCGCTGTACATCCACtttttttCCCGTCAACAGACGGAA 60
|||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 484 GACGTGAAATGGAAGACGCCGTCGCTGTGCATCC-GTTTTTTTCCCGTCATCAGACGGAA 542
Query 61 TATTCCTCCACCGGATTTCACTACTGCGGCGTTTACGATGGCCATGGCTGTTCCCATGTA 120
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 543 TATTCATCCACCGGATTTCACTATTGCGGCGTTTACGATGGCCATGGCTGTTCCCATGTA 602
Query 121 GCGATGAGATGCAGAGAAAGACTACACGAGCTAGTCCGTGAAGAGTTTGAAGCTGATGCT 180
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 GCGATGAAATGTAGAGAAAGACTACACGAGCTAGTCCGTGAAGAGTTTGAAGCTGATGCT 662
Query 181 GACTGGGAAAAGTCAATGGCGCGTAGCTTCACGCGCATGGACATGGAGGTTGTTGCGTTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 GACTGGGAAAAGTCAATGGCGCGTAGCTTCACGCGCATGGACATGGAGGTTGTTGCGTTG 722
Query 241 AACGCCGATGGTGCGGCGAAATGCCGTTGCGAGCTTCAGCGGCCGGACTGTGACGCGGTG 300
||||||||||||||||| |||||||| |||||||||||| |||||||||| |||||||||
Sbjct 723 AACGCCGATGGTGCGGCAAAATGCCGGTGCGAGCTTCAGAGGCCGGACTGCGACGCGGTG 782
Query 301 GGATCCACCGCGGTTGTGTCTGTTCTCACGCCGGAGAAAATCATCGTGGCAAATTGCGGT 360
|||||||| |||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 783 GGATCCACTGCGGTTGTGTCTGTCCTTACGCCGGAGAAAATCATCGTGGCGAATTGCGGT 842
Query 361 GACTCACGCGCCGTTCTGTGCCGTAACGGGAAGGCCATTGCTTTATCCTCCGATCATAAG 420
|||||||| |||||||| || |||||||| || |||||||||||||||||||||||||||
Sbjct 843 GACTCACGTGCCGTTCTCTGTCGTAACGGCAAAGCCATTGCTTTATCCTCCGATCATAAG 902
Query 421 CCCGACCGTCCGGACGAGCTAGACCGGATTCAAGCAGCGGGTGGTCGGGTTATCTACTGG 480
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 903 CCAGACCGTCCGGACGAGCTAGACCGGATTCAAGCAGCGGGTGGTCGTGTTATCTACTGG 962
Query 481 GATGGCCCACGTGTCCTTGGAGTACTTGCAATGTCACGAGCCATTG-A--TAATTACTTG 537
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 963 GATGGCCCACGTGTCCTTGGAGTACTTGCAATGTCACGAGCCATTGGAGATAATTACTTG 1022
Query 538 AAACCGTATGTAATCAGCAAACCGGAGGTAACCGTGACAGACCGGGCCAACGGAGACGAT 597
|| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1023 AAGCCGTATGTAATCAGCAGACCGGAGGTAACCGTGACGGACCGGGCCAACGGAGACGAT 1082
Query 598 TTCCTTATTCTAGCAAGTGACGGTCTTTGGGACGTTGTTTCAAACGAAACTGCATGTAGC 657
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 TTTCTTATTCTCGCAAGTGACGGTCTTTGGGACGTTGTTTCAAACGAAACTGCATGTAGC 1142
Query 658 GTCGTTCGAATGTGTTTGAGAGGAAAAGTCAATGGTCAACTATCATCCTCACCGGAAATG 717
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
Sbjct 1143 GTCGTTCGAATGTGTTTGAGAGGAAAAGTCAATGGTCAAGTATCATCATCACCGGAAAGG 1202
Query 718 GAAATGACAGGTCTCGGCGCCGGGAATGTGGTGGTCGGAGGAGGAGATTTGCCGGATAAA 777
|||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1203 GAAATGACAGGTGTCGGCGCCGGGAATGTGGTGGTTGGAGGAGGAGATTTGCCAGATAAA 1262
Query 778 GCGTGTGAGGAGGCTTCGCTGTTGCTGACGAGGCTTGCATTGGCTAGACAAAGTTCGGAC 837
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1263 GCGTGTGAGGAGGCGTCGCTGTTGCTGACGAGGCTTGCGTTGGCTAGACAAAGTTCGGAC 1322
Query 838 AACGTAAGTGTTGTGGTGGTTGATCTTA-GACGAGACACGTAG 879
|||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1323 AACGTAAGTGTTGTGGTGGTTGATCT-ACGACGAGACACGTAG 1364
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42899961538
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5