BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887889

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G48810.1 | Symbols: ATB5-B, B5 #3, ATCB5-D, CB5-D | cytochro...   302    1e-81


> AT5G48810.1 | Symbols: ATB5-B, B5 #3, ATCB5-D, CB5-D | cytochrome 
B5 isoform D | chr5:19789067-19790334 REVERSE LENGTH=759
Length=759

 Score =  302 bits (163),  Expect = 1e-81
 Identities = 176/182 (97%), Gaps = 2/182 (1%)
 Strand=Plus/Plus

Query  1    ATGGGCGGAGACGGCAAAGTTTTCACCTTGGCCGAAGTTTCTCAGCACAGTAGCTCCCAA  60
            |||||||||||||| ||||||||||||||| |||| ||||||||||||||||||  ||||
Sbjct  155  ATGGGCGGAGACGGAAAAGTTTTCACCTTGTCCGAGGTTTCTCAGCACAGTAGC-GCCAA  213

Query  61   -GATTGTTGGATCGTCATCGACGGCAAGGTTTATGATGTGACAAAGTTCTTGGATGATCA  119
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  214  GGATTGTTGGATCGTCATCGACGGCAAGGTTTATGATGTGACAAAGTTCTTGGATGATCA  273

Query  120  TCCTGGTGGTGATGAGGTTATCTTGACTTCTACAGGGAAAGATGCGACCGATGATTTCGA  179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  274  TCCTGGTGGTGATGAGGTTATCTTGACTTCTACAGGGAAAGATGCGACCGATGATTTCGA  333

Query  180  GG  181
            ||
Sbjct  334  GG  335



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8500928319


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5