BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887959
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11050.1 | Symbols: ATFER2, FER2 | ferritin 2 | chr3:3463598... 1177 0.0
AT3G61010.2 | Symbols: | Ferritin/ribonucleotide reductase-lik... 263 2e-69
> AT3G11050.1 | Symbols: ATFER2, FER2 | ferritin 2 | chr3:3463598-3465506
FORWARD LENGTH=1027
Length=1027
Score = 1177 bits (637), Expect = 0.0
Identities = 720/759 (95%), Gaps = 10/759 (1%)
Strand=Plus/Plus
Query 1 GTTGCTCAAAGCTTCTCCCGctctctctctctctTGAGCTCTGGCTCCGGCTCCGGCAGC 60
||||| ||| |||||||||| ||||||||||||||||||| |||| | || | ||
Sbjct 56 GTTGCACAAGGCTTCTCCCG--CTCTCTCTCTCTTGAGCTCCGGCT---ACACC-G--GC 107
Query 61 GGAGGAAATCTGTTTCCGCCGTCGAGAAATTCGTCGAATCTTCT-ATTTCATCCGAGTGG 119
|| |||||||||||||| |||||||||||||||||||||||||| |||| |||||||||
Sbjct 108 GGTGGAAATCTGTTTCCTCCGTCGAGAAATTCGTCGAATCTTCTGTTTTC-TCCGAGTGG 166
Query 120 ATCTAGGTTTTCTATTCAGGCGGCGAAAGGAACGAACACGAAGTCGTTAACCGGAGTTGT 179
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 ATCCAGGTTTTCTGTTCAGGCGGCGAAAGGAACGAACACGAAGTCGTTAACCGGAGTTGT 226
Query 180 ATTCGAACCATTTGAGGAGGTGAAGAAAGAACTGGAGCTCGTTCCCACTACCCCTTTTGT 239
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 227 ATTCGAACCTTTTGAGGAGGTGAAGAAAGAAATGGAGCTCGTTCCCACTACCCCTTTTGT 286
Query 240 TTCTCTCGCTCGCCACAAGTTCTCTGACGATTCTGAATCTGCCATCAACGATCAGATCAA 299
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 287 TTCTCTCGCTCGCCACAAGTTCTCCGACGATTCTGAATCTGCCATCAACGATCAGATCAA 346
Query 300 CGTGGAGTACAATGTCTCCTATGTCTACCATGCCCTGTATGCTTACTTTGACAGAGACAA 359
|||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 347 CGTGGAGTACAACGTCTCGTATGTCTACCATGCCCTGTATGCCTACTTTGACAGAGACAA 406
Query 360 TGTCGGCTTGAAAGGTTTCGCCAAGTTCTTCAACGATTCGAGTCTTGAAGAAAGAGGTCA 419
||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||
Sbjct 407 TGTCGGCTTGAAAGGTTTCGCCAAGTTTTTTAACGATTCGAGTCTTGAAGAACGAGGTCA 466
Query 420 TGCTGAGAAGTTTATGGAGTATCAGAACATGCGCGGTGGGAGAGTGAAGCTGCAGTCTAT 479
|||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 467 TGCTGAGATGTTTATGGAGTATCAGAACAAGCGTGGTGGGAGAGTGAAGCTGCAGTCTAT 526
Query 480 TTTGATGCCCGTCTCTGAGTTTGATCACGAGGAGAAGGGAGATGCATTGCATGCGATGGA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 TTTGATGCCCGTCTCTGAGTTTGATCACGAGGAGAAGGGAGATGCATTGCATGCGATGGA 586
Query 540 GCTTGCACTGTCTTTGGAGAAACTTACTAATGAAAAGCTTCTGAAGTTGCAAAGTGTTGG 599
||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 587 GCTTGCATTGTCTTTGGAGAAACTTACAAATGAAAAGCTTCTGAAGTTACAAAGTGTTGG 646
Query 600 TGTGAAGAACAATGATGTTCAGCTGGTTGATTTTGTAGAATCCGAGTTTCTCGGCGAGCA 659
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 647 TGTGAAGAACAATGATGTTCAGCTGGTTGATTTTGTAGAATCTGAGTTTCTAGGCGAGCA 706
Query 660 GGTTGAAGCCATCAAGAAAATCTCAGAGTACGTTGCACAGCTAAGAAGAATAGGAAAGGG 719
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 GGTCGAAGCTATCAAGAAAATCTCAGAGTACGTTGCACAGCTAAGAAGAATAGGAAAGGG 766
Query 720 TCATGGAGTGTGGCATTTTGATCAAATGCTTCTCAATGA 758
|||||||||||||||||||||||||||||||||||||||
Sbjct 767 TCATGGAGTGTGGCATTTTGATCAAATGCTTCTCAATGA 805
> AT3G61010.2 | Symbols: | Ferritin/ribonucleotide reductase-like
family protein | chr3:22571327-22575180 REVERSE LENGTH=1925
Length=1925
Score = 263 bits (142), Expect = 2e-69
Identities = 162/172 (94%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 519 AGATGCATTGCATGCGATGGAGCTTGCACTGTCTTTGGAGAAACTTACTAATGAAAAGCT 578
|||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1693 AGATGCATTGTTTGCGATGGAGCTTGCACTGACTTTGGAGAAACTTATTAATGAAAAGCT 1752
Query 579 TCTGAAGTTGCAAAGTGTTGGTGTGAAGAACAATGATGTTCAGCTGGTTGATTTTGTAGA 638
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1753 TCTGAAGTTACAAAGTGTTGGTGTGAAGAACAATGATGTTAAGCTGGTTGATTTTGTAGA 1812
Query 639 ATCCGAGTTTCTCGGCGAGCAGGTTGAAGCCATCAAGAAAATCTCAGAGTAC 690
||| |||||||| ||||||| ||| |||||||||||||||||||||||||||
Sbjct 1813 ATCTGAGTTTCTAGGCGAGCTGGTCGAAGCCATCAAGAAAATCTCAGAGTAC 1864
Score = 108 bits (58), Expect = 1e-22
Identities = 76/84 (90%), Gaps = 3/84 (4%)
Strand=Plus/Plus
Query 295 ATCAACGTGGAGTACAATGTCTCCTATGTCTACCATGCCCT-GTATGCTTACTTTGACAG 353
||| ||||||||||||||||||||||||||||||||||||| | |||| ||| | || ||
Sbjct 1601 ATCGACGTGGAGTACAATGTCTCCTATGTCTACCATGCCCTAG-ATGCCTACATCGAGAG 1659
Query 354 AGACAATGTCGGCTTGAAAGGTTT 377
|||||||||||||||||||| |||
Sbjct 1660 AGACAATGTCGGCTTGAAAG-TTT 1682
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37173268780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5